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{{f5samples
{{f5samples
|DRA_sample_Accession=rat_CAGE@SAMD00053790
|DRA_sample_Accession_Zoo=rat_sRNA@SAMD00053790
|accession_numbers=rat_CAGE;DRX057312;DRR063071;DRZ007611;DRZ007624
|accession_numbers_Zoo=rat_sRNA;DRX163596;DRR172985;DRZ014432!rat_sRNA;DRX163597;DRR172986;DRZ014433!rat_sRNA;DRX163598;DRR172987;DRZ014434
|ancestors_in_anatomy_facet=UBERON:0000479,UBERON:0000061,UBERON:0000465,UBERON:0001062
|ancestors_in_cell_lineage_facet=
|ancestors_in_disease_facet=
|ancestors_in_ff_facet=FF:0000102,FF:0000101,FF:0000001,FF:0000147,FF:0000004
|comment=
|created_by=
|creation_date=
|def=
|fonse_cell_line=
|fonse_cell_line_closure=
|fonse_cellprecursor=
|fonse_cellprecursor_closure=
|fonse_developsfrom=
|fonse_developsfrom_closure=
|fonse_disease=
|fonse_disease_closure=
|fonse_isa=
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|fonse_location=
|fonse_location_closure=
|fonse_organ=
|fonse_organ_closure=
|fonse_organismsubdivision=
|fonse_organismsubdivision_closure=
|fonse_sampletype=
|fonse_sampletype_closure=
|fonse_stage=
|fonse_stage_closure=
|fonse_system=
|fonse_system_closure=
|fonse_taxon=
|fonse_taxon_closure=
|fonse_treatment=
|fonse_treatment_closure=
|has_quality=PATO:0000461
|id=FF:10009-101B8
|id=FF:10009-101B8
|is_a=FF:0000004;;FF:0000147
|is_obsolete=
|library_id=CNhs10614
|name=Universal RNA - Rat Normal Tissues Biochain, pool1
|name=Universal RNA - Rat Normal Tissues Biochain, pool1
|sample_id=10009
|namespace=
|rna_tube_id=101B9
|part_of=
|profile_cagescan=,,,
|profile_hcage=CNhs10614,LSID656,release008,COMPLETED
|profile_rnaseq=,,,
|profile_srnaseq=SRhi10008,,,
|rna_box=101
|rna_box=101
|rna_position=B9
|rna_catalog_number=Cat:R4434567-1
|rna_concentration=1
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0
|rna_lot_number=B203033
|rna_od260/230=
|rna_od260/280=
|rna_position=B8
|rna_rin=7.5
|rna_sample_type=total RNA
|rna_tube_id=101B8
|rna_weight_ug=100
|sample_age=
|sample_category=tissues
|sample_cell_catalog=NA
|sample_cell_line=
|sample_cell_lot=NA
|sample_cell_lot=NA
|sample_cell_catalog=NA
|sample_cell_type=CELL MIXTURE - tissue sample
|sample_collaboration=FANTOM5 OSC CORE (contact: Al Forrest)
|sample_company=Biochain
|sample_company=Biochain
|rna_lot_number=B203033
|sample_description=
|rna_catalog_number=Cat:R4434567-1
|sample_species=Rat (Rattus rattus)
|sample_strain=
|sample_dev_stage=6-7 weeks old adult
|sample_dev_stage=6-7 weeks old adult
|sample_tissue=whole body
|sample_disease=normal
|sample_donor(cell lot)=4 pool
|sample_donor(cell lot)=4 pool
|sample_sex=mixed
|sample_age=
|sample_ethnicity=
|sample_ethnicity=
|rna_rin=7.50000
|rna_od260/230=
|rna_od260/280=
|sample_cell_type=CELL MIXTURE - tissue sample
|sample_cell_line=
|sample_collaboration=FANTOM5 OSC CORE (contact: Al Forrest)
|sample_experimental_condition=
|sample_experimental_condition=
|sample_disease=normal
|sample_id=10009
|rna_sample_type=total RNA
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0
|rna_weight_ug=100.00000
|rna_concentration=
|sample_note=
|sample_note=
|profile_hcage=CNhs10614,LSID656,release008,COMPLETED
|sample_sex=mixed
|profile_cagescan=,,,
|sample_species=Rattus norvegicus
|profile_srnaseq=SRhi10008,,,
|sample_strain=
|profile_rnaseq=,,,
|sample_tissue=whole body
|ancestors_in_cell_lineage_facet=
|top_motifs=
|ancestors_in_anatomy_facet=
|xref=
|ancestors_in_disease_facet=
|zenbu_config=http://fantom.gsc.riken.jp/zenbu/gLyphs/#config=gi3TrQ9wOhwsh6MVmlDg7D;loc=rn6::chr4:113862631..113887928+
|sample_description=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_rat;search_select_hide=table111:FF:10009-101B8;search_select_hide=table117:FF:10009-101B8
 
|zoo_library_id=SRhi10008.GGCTAC!SRhi10009.GGTAGC!SRhi10012.GTCCGC
}}
}}

Latest revision as of 09:37, 5 June 2020


Name:Universal RNA - Rat Normal Tissues Biochain, pool1
Species:Rattus norvegicus
Library ID:CNhs10614
Sample type:tissues
ZENBU report :link
Additional information
Sample information
strainNA
tissuewhole body
dev stage6-7 weeks old adult
sexmixed
ageNA
cell typeCELL MIXTURE - tissue sample
cell lineNA
companyBiochain
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberB203033
catalog numberCat:R4434567-1
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0

CAGE Accession numbers
MethodSample accession id
rat_CAGE  SAMD00053790
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs10614 rat_CAGE DRX057312 DRR063071
Accession ID

Library idBAMCTSS
CNhs10614 DRZ007611 DRZ007624

sRNA Accession numbers
MethodSample accession id
rat_sRNA  SAMD00053790
Library accession numbers

Library idMethodExp. accession idRun accession id
SRhi10008.GGCTAC rat_sRNA DRX163596 DRR172985
SRhi10009.GGTAGC rat_sRNA DRX163597 DRR172986
SRhi10012.GTCCGC rat_sRNA DRX163598 DRR172987
Accession ID

Library idBAMCTSS
SRhi10008.GGCTAC DRZ014432
SRhi10009.GGTAGC DRZ014433
SRhi10012.GTCCGC DRZ014434



FANTOM5 (FF) ontology

Direct parent terms

has_quality relathionship
PATO:0000461

Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

UBERON: Anatomy
0000479 (tissue)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0001062 (anatomical entity)

FF: FANTOM5
0000102 (sample by type)
0000101 (sample by species)
0000001 (sample)
0000147 (rat sample)
0000004 (tissue sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
NA

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