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{{DOID
{{DOID
|id=DOID:4045
|alt_id=DOID:4046
|name=muscle cancer
|namespace=
|def="A musculoskeletal system cancer that is located_in muscle." [url:http\://en.wikipedia.org/wiki/Muscle]
|xref=
|is_a=DOID:0060100
|synonym="malignant neoplasm of muscle, NOS" EXACT [SNOMEDCT_2005_07_31:93913006];;"malignant tumor of muscle (disorder)" EXACT [SNOMEDCT_2005_07_31:363495004];;"malignant tumor of the Muscle" EXACT [NCI2004_11_17:C4883];;"myosarcoma" EXACT [];;"Myosarcoma (morphologic abnormality)" EXACT [SNOMEDCT_2005_07_31:20667008]
|comment=
|comment=
|alt_id=DOID:4046
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="A musculoskeletal system cancer that is located_in muscle." [url:http://en.wikipedia.org/wiki/Muscle]
|subset=
|adjacent_to=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=DOID:4045
|is_a=DOID:0060100
|is_obsolete=
|located_in=
|located_in=
|name=muscle cancer
|namespace=FANTOM
|obo_creation_date=
|part_of=
|part_of=
|preceded_by=
|property_value=IAO:0000412 file:/Users/cjm/Dropbox/fantom5/HumanDO.obo
|subset=
|synonym="malignant neoplasm of muscle, NOS" EXACT [SNOMEDCT_2005_07_31:93913006];;"malignant tumor of muscle (disorder)" EXACT [SNOMEDCT_2005_07_31:363495004];;"malignant tumor of the Muscle" EXACT [NCI2004_11_17:C4883];;"myosarcoma" EXACT [];;"Myosarcoma (morphologic abnormality)" EXACT [SNOMEDCT_2005_07_31:20667008]
|union_of=
|xref=MSH:D009217;;SNOMEDCT_2010_1_31:20667008;;SNOMEDCT_2010_1_31:363495004;;SNOMEDCT_2010_1_31:93913006;;UMLS_CUI:C0027095;;UMLS_CUI:C0684743
}}
}}

Latest revision as of 16:51, 12 September 2014

Name:muscle cancer
Namespace:FANTOM
Definition:"A musculoskeletal system cancer that is located_in muscle." [url:http://en.wikipedia.org/wiki/Muscle]
Xrefs:
links:

MSH:D009217
SNOMEDCT_2010_1_31:20667008
SNOMEDCT_2010_1_31:363495004
SNOMEDCT_2010_1_31:93913006
UMLS_CUI:C0027095

UMLS_CUI:C0684743
Synonyms: "malignant neoplasm of muscle, NOS" EXACT [SNOMEDCT_2005_07_31:93913006]
"malignant tumor of muscle (disorder)" EXACT [SNOMEDCT_2005_07_31:363495004]
"malignant tumor of the Muscle" EXACT [NCI2004_11_17:C4883]
"myosarcoma" EXACT []
"Myosarcoma (morphologic abnormality)" EXACT [SNOMEDCT_2005_07_31:20667008]
Alt_id: DOID:4046

Ontology association<br>Each term has an is_a parent in the Disease Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to DISEASE ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:DOID:0060100(musculoskeletal system cancer)



Children


is a:DOID:4043 (skeletal muscle cancer),DOID:4230 (smooth muscle cancer)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples

Human (Homo sapiens)

Mouse (Mus musculus)

Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with DOID:4045 (muscle cancer), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
1.58e-86FFCP PHASE1:Mm9::chr1:180919481..180919491,-#_459176c8efd2047e12c418657f953118p4@Smyd3
1.58e-86FFCP PHASE2:Mm9::chr1:180919481..180919491,-#_459176c8efd2047e12c418657f953118p4@Smyd3
6.04e-65FFCP PHASE2:Mm9::chr10:94309614..94309618,+#_efb65920e263b9192dc203ecf4893bb7p@chr10:94309614..94309618, +
6.04e-65FFCP PHASE1:Mm9::chr12:32681792..32681797,-#_efb65920e263b9192dc203ecf4893bb7p@chr12:32681792..32681797, -
6.04e-65FFCP PHASE1:Mm9::chr10:94309614..94309618,+#_efb65920e263b9192dc203ecf4893bb7p@chr10:94309614..94309618, +
6.04e-65FFCP PHASE2:Mm9::chr12:32681792..32681797,-#_efb65920e263b9192dc203ecf4893bb7p@chr12:32681792..32681797, -
1.1e-52FFCP PHASE2:Mm9::chr18:42389517..42389526,-#_f7e78237005fa4cf5ed63a15b6c6953bp@chr18:42389517..42389526, -
1.1e-52FFCP PHASE1:Mm9::chr18:42389517..42389526,-#_f7e78237005fa4cf5ed63a15b6c6953bp@chr18:42389517..42389526, -
1.65e-52FFCP PHASE2:Mm9::chr4:95407927..95407931,-#_4d0fdd9b9ebf0a7479b27eaf6bc7799fp@chr4:95407927..95407931, -
1.65e-52FFCP PHASE1:Mm9::chr4:95407927..95407931,-#_4d0fdd9b9ebf0a7479b27eaf6bc7799fp@chr4:95407927..95407931, -
1.65e-52FFCP PHASE2:Mm9::chr17:18027312..18027316,+#_4d0fdd9b9ebf0a7479b27eaf6bc7799fp@chr17:18027312..18027316, +
1.65e-52FFCP PHASE2:Mm9::chr17:73986396..73986402,-#_4d0fdd9b9ebf0a7479b27eaf6bc7799fp@chr17:73986396..73986402, -
1.65e-52FFCP PHASE2:Mm9::chr12:109999540..109999552,-#_4d0fdd9b9ebf0a7479b27eaf6bc7799fp@chr12:109999540..109999552, -
1.65e-52FFCP PHASE1:Mm9::chr17:18027312..18027316,+#_4d0fdd9b9ebf0a7479b27eaf6bc7799fp@chr17:18027312..18027316, +
1.65e-52FFCP PHASE2:Mm9::chr1:93945098..93945105,-#_4d0fdd9b9ebf0a7479b27eaf6bc7799fp@chr1:93945098..93945105, -
1.65e-52FFCP PHASE1:Mm9::chr17:73986396..73986402,-#_4d0fdd9b9ebf0a7479b27eaf6bc7799fp@chr17:73986396..73986402, -
1.65e-52FFCP PHASE1:Mm9::chr1:93945098..93945105,-#_4d0fdd9b9ebf0a7479b27eaf6bc7799fp@chr1:93945098..93945105, -
1.65e-52FFCP PHASE1:Mm9::chr2:65027620..65027631,+#_4d0fdd9b9ebf0a7479b27eaf6bc7799fp@chr2:65027620..65027631, +
1.65e-52FFCP PHASE2:Mm9::chr2:65027620..65027631,+#_4d0fdd9b9ebf0a7479b27eaf6bc7799fp@chr2:65027620..65027631, +
1.65e-52FFCP PHASE1:Mm9::chr12:109999540..109999552,-#_4d0fdd9b9ebf0a7479b27eaf6bc7799fp@chr12:109999540..109999552, -
2.47e-52FFCP PHASE1:Mm9::chr14:34007222..34007226,+#_a893e456e70e6918b071489d3e0b3a22p@chr14:34007222..34007226, +
2.47e-52FFCP PHASE2:Mm9::chr17:48322531..48322538,+#_a893e456e70e6918b071489d3e0b3a22p@chr17:48322531..48322538, +
2.47e-52FFCP PHASE1:Mm9::chr9:96519592..96519622,+#_a893e456e70e6918b071489d3e0b3a22p@chr9:96519592..96519622, +
2.47e-52FFCP PHASE1:Mm9::chr17:48322531..48322538,+#_a893e456e70e6918b071489d3e0b3a22p@chr17:48322531..48322538, +
2.47e-52FFCP PHASE2:Mm9::chr19:21545650..21545664,-#_a893e456e70e6918b071489d3e0b3a22p@chr19:21545650..21545664, -
2.47e-52FFCP PHASE2:Mm9::chr5:91125117..91125120,-#_a893e456e70e6918b071489d3e0b3a22p@chr5:91125117..91125120, -
2.47e-52FFCP PHASE1:Mm9::chr19:21545650..21545664,-#_a893e456e70e6918b071489d3e0b3a22p@chr19:21545650..21545664, -
2.47e-52FFCP PHASE1:Mm9::chr10:84019204..84019209,+#_a893e456e70e6918b071489d3e0b3a22p@chr10:84019204..84019209, +
2.47e-52FFCP PHASE2:Mm9::chr14:34007222..34007226,+#_a893e456e70e6918b071489d3e0b3a22p@chr14:34007222..34007226, +
2.47e-52FFCP PHASE1:Mm9::chr3:51015481..51015493,-#_a893e456e70e6918b071489d3e0b3a22p@chr3:51015481..51015493, -
2.47e-52FFCP PHASE2:Mm9::chr3:51015481..51015493,-#_a893e456e70e6918b071489d3e0b3a22p@chr3:51015481..51015493, -
2.47e-52FFCP PHASE2:Mm9::chr9:96519592..96519622,+#_a893e456e70e6918b071489d3e0b3a22p@chr9:96519592..96519622, +
2.47e-52FFCP PHASE1:Mm9::chr5:91125117..91125120,-#_a893e456e70e6918b071489d3e0b3a22p@chr5:91125117..91125120, -
2.47e-52FFCP PHASE2:Mm9::chr10:84019204..84019209,+#_a893e456e70e6918b071489d3e0b3a22p@chr10:84019204..84019209, +
3.69e-52FFCP PHASE1:Mm9::chr10:4797822..4797824,-#_1fce3154e58214f0381a155022812c33p@chr10:4797822..4797824, -
3.69e-52FFCP PHASE1:Mm9::chr13:83089547..83089553,-#_1fce3154e58214f0381a155022812c33p@chr13:83089547..83089553, -
3.69e-52FFCP PHASE2:Mm9::chr13:83089547..83089553,-#_1fce3154e58214f0381a155022812c33p@chr13:83089547..83089553, -
3.69e-52FFCP PHASE2:Mm9::chr17:70883915..70883925,+#_1fce3154e58214f0381a155022812c33p@chr17:70883915..70883925, +
3.69e-52FFCP PHASE2:Mm9::chr10:4797822..4797824,-#_1fce3154e58214f0381a155022812c33p@chr10:4797822..4797824, -
3.69e-52FFCP PHASE1:Mm9::chr17:70883915..70883925,+#_1fce3154e58214f0381a155022812c33p@chr17:70883915..70883925, +
5.51e-52FFCP PHASE2:Mm9::chr13:55997174..55997188,+#_d4e227f8fc8067e163b091c1fc668584p@chr13:55997174..55997188, +
5.51e-52FFCP PHASE1:Mm9::chr7:108511327..108511332,-#_d4e227f8fc8067e163b091c1fc668584p@chr7:108511327..108511332, -
5.51e-52FFCP PHASE1:Mm9::chr6:88787436..88787445,-#_d4e227f8fc8067e163b091c1fc668584p@chr6:88787436..88787445, -
5.51e-52FFCP PHASE2:Mm9::chr18:56664094..56664101,-#_d4e227f8fc8067e163b091c1fc668584p@chr18:56664094..56664101, -
5.51e-52FFCP PHASE2:Mm9::chr6:88787436..88787445,-#_d4e227f8fc8067e163b091c1fc668584p@chr6:88787436..88787445, -
5.51e-52FFCP PHASE2:Mm9::chr19:24603529..24603552,-#_d4e227f8fc8067e163b091c1fc668584p@chr19:24603529..24603552, -
5.51e-52FFCP PHASE2:Mm9::chr8:109293163..109293169,-#_d4e227f8fc8067e163b091c1fc668584p@chr8:109293163..109293169, -
5.51e-52FFCP PHASE2:Mm9::chr8:124094361..124094366,-#_d4e227f8fc8067e163b091c1fc668584p@chr8:124094361..124094366, -
5.51e-52FFCP PHASE2:Mm9::chr7:108511327..108511332,-#_d4e227f8fc8067e163b091c1fc668584p@chr7:108511327..108511332, -
5.51e-52FFCP PHASE1:Mm9::chr8:109293163..109293169,-#_d4e227f8fc8067e163b091c1fc668584p@chr8:109293163..109293169, -
5.51e-52FFCP PHASE1:Mm9::chr3:51015411..51015416,-#_d4e227f8fc8067e163b091c1fc668584p@chr3:51015411..51015416, -
5.51e-52FFCP PHASE1:Mm9::chr8:124094361..124094366,-#_d4e227f8fc8067e163b091c1fc668584p@chr8:124094361..124094366, -
5.51e-52FFCP PHASE2:Mm9::chr2:134314492..134314494,-#_d4e227f8fc8067e163b091c1fc668584p@chr2:134314492..134314494, -
5.51e-52FFCP PHASE1:Mm9::chr2:134314492..134314494,-#_d4e227f8fc8067e163b091c1fc668584p@chr2:134314492..134314494, -
5.51e-52FFCP PHASE1:Mm9::chr18:56664094..56664101,-#_d4e227f8fc8067e163b091c1fc668584p@chr18:56664094..56664101, -
5.51e-52FFCP PHASE2:Mm9::chr3:51015411..51015416,-#_d4e227f8fc8067e163b091c1fc668584p@chr3:51015411..51015416, -
5.51e-52FFCP PHASE1:Mm9::chr13:55997174..55997188,+#_d4e227f8fc8067e163b091c1fc668584p@chr13:55997174..55997188, +
5.51e-52FFCP PHASE2:Mm9::chr7:75278691..75278698,+#_d4e227f8fc8067e163b091c1fc668584p@chr7:75278691..75278698, +
5.51e-52FFCP PHASE1:Mm9::chr7:75278691..75278698,+#_d4e227f8fc8067e163b091c1fc668584p@chr7:75278691..75278698, +
5.51e-52FFCP PHASE2:Mm9::chr5:54445170..54445183,+#_d4e227f8fc8067e163b091c1fc668584p@chr5:54445170..54445183, +
5.51e-52FFCP PHASE2:Mm9::chr1:93945286..93945297,+#_d4e227f8fc8067e163b091c1fc668584p@chr1:93945286..93945297, +
5.51e-52FFCP PHASE1:Mm9::chr19:24603529..24603552,-#_d4e227f8fc8067e163b091c1fc668584p@chr19:24603529..24603552, -
5.51e-52FFCP PHASE1:Mm9::chr5:54445170..54445183,+#_d4e227f8fc8067e163b091c1fc668584p@chr5:54445170..54445183, +
5.51e-52FFCP PHASE1:Mm9::chr1:93945286..93945297,+#_d4e227f8fc8067e163b091c1fc668584p@chr1:93945286..93945297, +
5.51e-52FFCP PHASE1:Mm9::chr1:182778780..182778789,-#_d4e227f8fc8067e163b091c1fc668584p@chr1:182778780..182778789, -
5.51e-52FFCP PHASE2:Mm9::chr1:182778780..182778789,-#_d4e227f8fc8067e163b091c1fc668584p@chr1:182778780..182778789, -
1.18e-44FFCP PHASE1:Mm9::chr13:55629806..55629810,-#_16d066301367081bf330b13ab858cf71p3@Dok3
1.18e-44FFCP PHASE2:Mm9::chrX:45628107..45628118,+#_16d066301367081bf330b13ab858cf71p@chrX:45628107..45628118, +
1.18e-44FFCP PHASE2:Mm9::chr10:12649672..12649677,-#_16d066301367081bf330b13ab858cf71p@chr10:12649672..12649677, -
1.18e-44FFCP PHASE2:Mm9::chr11:70250817..70250828,+#_16d066301367081bf330b13ab858cf71p8@Arrb2
1.18e-44FFCP PHASE2:Mm9::chr13:55629806..55629810,-#_16d066301367081bf330b13ab858cf71p3@Dok3
1.18e-44FFCP PHASE2:Mm9::chr5:150046846..150046863,+#_16d066301367081bf330b13ab858cf71p@chr5:150046846..150046863, +
1.18e-44FFCP PHASE1:Mm9::chr5:150046846..150046863,+#_16d066301367081bf330b13ab858cf71p@chr5:150046846..150046863, +
1.18e-44FFCP PHASE1:Mm9::chrX:45628107..45628118,+#_16d066301367081bf330b13ab858cf71p@chrX:45628107..45628118, +
1.18e-44FFCP PHASE1:Mm9::chr2:122388084..122388093,-#_16d066301367081bf330b13ab858cf71p@chr2:122388084..122388093, -
1.18e-44FFCP PHASE2:Mm9::chr2:122388084..122388093,-#_16d066301367081bf330b13ab858cf71p@chr2:122388084..122388093, -
1.18e-44FFCP PHASE1:Mm9::chr8:59915282..59915287,+#_16d066301367081bf330b13ab858cf71p@chr8:59915282..59915287, +
1.18e-44FFCP PHASE1:Mm9::chr11:70250817..70250828,+#_16d066301367081bf330b13ab858cf71p8@Arrb2
1.18e-44FFCP PHASE2:Mm9::chr2:152521243..152521254,+#_16d066301367081bf330b13ab858cf71p@chr2:152521243..152521254, +
1.18e-44FFCP PHASE2:Mm9::chr5:150056307..150056318,-#_16d066301367081bf330b13ab858cf71p@chr5:150056307..150056318, -
1.18e-44FFCP PHASE1:Mm9::chr2:152521243..152521254,+#_16d066301367081bf330b13ab858cf71p@chr2:152521243..152521254, +
1.18e-44FFCP PHASE1:Mm9::chr5:150056307..150056318,-#_16d066301367081bf330b13ab858cf71p@chr5:150056307..150056318, -
1.18e-44FFCP PHASE2:Mm9::chr8:59915282..59915287,+#_16d066301367081bf330b13ab858cf71p@chr8:59915282..59915287, +
1.18e-44FFCP PHASE1:Mm9::chr10:12649672..12649677,-#_16d066301367081bf330b13ab858cf71p@chr10:12649672..12649677, -
1.66e-44FFCP PHASE2:Mm9::chr13:41703140..41703184,-#_16f981e57b7634267802a884ad75acdbp@chr13:41703140..41703184, -
1.66e-44FFCP PHASE2:Mm9::chr7:148203451..148203468,-#_16f981e57b7634267802a884ad75acdbp@chr7:148203451..148203468, -
1.66e-44FFCP PHASE1:Mm9::chr7:148203451..148203468,-#_16f981e57b7634267802a884ad75acdbp@chr7:148203451..148203468, -
1.66e-44FFCP PHASE1:Mm9::chr13:41703140..41703184,-#_16f981e57b7634267802a884ad75acdbp@chr13:41703140..41703184, -
1.66e-44FFCP PHASE1:Mm9::chr2:157619996..157620003,-#_16f981e57b7634267802a884ad75acdbp@chr2:157619996..157620003, -
1.66e-44FFCP PHASE1:Mm9::chr14:79050736..79050745,+#_16f981e57b7634267802a884ad75acdbp@chr14:79050736..79050745, +
1.66e-44FFCP PHASE2:Mm9::chr2:157619996..157620003,-#_16f981e57b7634267802a884ad75acdbp@chr2:157619996..157620003, -
1.66e-44FFCP PHASE2:Mm9::chr14:79050736..79050745,+#_16f981e57b7634267802a884ad75acdbp@chr14:79050736..79050745, +
2.33e-44FFCP PHASE2:Mm9::chr2:167402678..167402682,-#_13720967272dc3ba1dcf3ed82d0f5789p@chr2:167402678..167402682, -
2.33e-44FFCP PHASE1:Mm9::chr10:7382593..7382598,+#_13720967272dc3ba1dcf3ed82d0f5789p@chr10:7382593..7382598, +
2.33e-44FFCP PHASE2:Mm9::chr7:50912014..50912019,-#_13720967272dc3ba1dcf3ed82d0f5789p@chr7:50912014..50912019, -
2.33e-44FFCP PHASE1:Mm9::chr7:50912014..50912019,-#_13720967272dc3ba1dcf3ed82d0f5789p@chr7:50912014..50912019, -
2.33e-44FFCP PHASE2:Mm9::chr14:61928697..61928708,+#_13720967272dc3ba1dcf3ed82d0f5789p3@Arl11
2.33e-44FFCP PHASE2:Mm9::chr17:29773950..29773992,+#_13720967272dc3ba1dcf3ed82d0f5789p@chr17:29773950..29773992, +
2.33e-44FFCP PHASE2:Mm9::chr10:7382593..7382598,+#_13720967272dc3ba1dcf3ed82d0f5789p@chr10:7382593..7382598, +
2.33e-44FFCP PHASE1:Mm9::chr14:61928697..61928708,+#_13720967272dc3ba1dcf3ed82d0f5789p3@Arl11

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