FFCP PHASE1:Mm9::chr3:125641440..125641454,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=22239 | |EntrezGene=22239 | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=20 | |||
|TSSclassifier=NA | |||
|UniProt=Q64676 | |UniProt=Q64676 | ||
|association_with_transcript=13bp_to_ENSMUST00000057944,NM_011674,uc008rfz.1,uc008rgb.1_5end | |association_with_transcript=13bp_to_ENSMUST00000057944,NM_011674,uc008rfz.1,uc008rgb.1_5end | ||
|cluster_id=chr3:125641440..125641454,- | |||
|description=CAGE_peak_5_at_Ugt8a_5end | |description=CAGE_peak_5_at_Ugt8a_5end | ||
|id=chr3:125641440..125641454,- | |id=chr3:125641440..125641454,- | ||
|ontology_enrichment_celltype=CL:0000117!9.36e-07!23;CL:0000337!9.36e-07!23 | |||
|ontology_enrichment_celltype_v019_2=CL:0002610,1.20e-16,3;CL:0002614,8.08e-16,3;CL:0000117,1.20e-13,23;CL:0000337,1.20e-13,23;CL:0002611,1.67e-11,2;CL:0000221,1.92e-10,44;CL:0000133,1.92e-10,44;CL:0000540,3.09e-09,33;CL:0000047,3.09e-09,33;CL:0000031,3.09e-09,33;CL:0000404,3.09e-09,33;CL:0002319,1.12e-08,43;CL:0000393,1.14e-07,39;CL:0000211,1.14e-07,39 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004121!7.22e-19!102;UBERON:0000924!7.22e-19!102;UBERON:0006601!7.22e-19!102;UBERON:0001049!2.78e-17!52;UBERON:0005068!2.78e-17!52;UBERON:0006241!2.78e-17!52;UBERON:0007135!2.78e-17!52;UBERON:0000033!8.70e-17!63;UBERON:0000073!2.28e-16!75;UBERON:0001016!2.28e-16!75;UBERON:0002616!4.12e-16!49;UBERON:0000955!1.36e-15!50;UBERON:0006238!1.36e-15!50;UBERON:0002346!2.44e-15!71;UBERON:0003075!2.44e-15!71;UBERON:0007284!2.44e-15!71;UBERON:0001017!1.00e-14!73;UBERON:0005743!1.00e-14!73;UBERON:0007811!1.17e-10!86;UBERON:0003080!1.52e-10!40;UBERON:0002020!3.86e-10!34;UBERON:0003056!5.50e-10!49;UBERON:0002780!9.58e-10!39;UBERON:0001890!9.58e-10!39;UBERON:0006240!9.58e-10!39;UBERON:0000153!7.95e-09!94;UBERON:0002298!9.24e-09!6;UBERON:0003076!3.00e-08!12;UBERON:0003057!3.00e-08!12;UBERON:0002021!9.35e-08!10;UBERON:0000411!9.35e-08!10;UBERON:0001950!9.35e-08!10;UBERON:0002791!2.31e-07!29;UBERON:0003528!2.31e-07!29;UBERON:0001893!2.31e-07!29;UBERON:0000956!4.27e-07!21;UBERON:0001869!4.27e-07!21;UBERON:0000203!4.27e-07!21 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004684,1.20e-16,3;UBERON:0002275,1.20e-16,3;UBERON:0002038,8.08e-16,3;UBERON:0009663,8.08e-16,3;UBERON:0009661,8.08e-16,3;UBERON:0000125,8.08e-16,3;UBERON:0002308,8.08e-16,3;UBERON:0000073,9.40e-15,54;UBERON:0001016,7.25e-14,75;UBERON:0001017,2.55e-12,73;UBERON:0001896,3.84e-12,2;UBERON:0002298,3.84e-12,2;UBERON:0005290,3.84e-12,2;UBERON:0010096,3.84e-12,2;UBERON:0004121,3.90e-12,95;UBERON:0000924,3.90e-12,95;UBERON:0006601,3.90e-12,95;UBERON:0002950,5.16e-12,4;UBERON:0001891,5.16e-12,4;UBERON:0009616,5.16e-12,4;UBERON:0010286,5.16e-12,4;UBERON:0002256,1.67e-11,2;UBERON:0003076,3.11e-11,12;UBERON:0003057,3.11e-11,12;UBERON:0001049,8.73e-11,52;UBERON:0005068,8.73e-11,52;UBERON:0006241,8.73e-11,52;UBERON:0007135,8.73e-11,52;UBERON:0010371,1.10e-08,73;UBERON:0002240,1.45e-08,6;UBERON:0005174,1.45e-08,6;UBERON:0001137,1.45e-08,6;UBERON:0002346,1.82e-08,64;UBERON:0003075,1.82e-08,64;UBERON:0007284,1.82e-08,64;UBERON:0002020,8.09e-07,34 | |||
|phase1_expression=0.480446541314382,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.202475267389826,0,0,0,0,0.0850432901510698,0,0,0,0,0,0,0,0.190023419456374,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.210324961351382,1.71390590642282,1.98781686856452,0.122490799214954,0.191690942036473,0,5.50579404996943,1.78762273319263,1.22885226604995,0,0,0,2.51264699101243,1.12552522006336,1.06958773443767,0.294628585473668,0.711858403995515,0,1.13589289999776,0.453429360640713,0,0,0,0,0,0,0.140444420131752,0,0,0,1.12674735821344,0,0,0,0,0,0,0.11418387971906,0,0,0,0,0.230615497256059,0.150722640552623,0,0.125666591329675,0.247194967734374,0,0,0.161766849947409,0,0,0,0.585561594023094,0.83778682725382,0,0,0,0,0.748953197024114,0,0,0.521472960576829,0.255715457330331,0.41557608911912,1.78465389374533,0,0,0,0,0,0,0,0,0,0.384341160854549,0.0937017245597288,0.258703370739016,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.210289948564127,0,0,0,0,0,0,0,0,0.190225626112559,0,0,0,0,0,0,0,0,0,0,1.1270773567308,0,0.193952487167626,0.140271639780637,0.0632365371242573,0,0,0.123397163921801,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.159454768657487,0,0,0.144649058581512,0,0,0,0,2.88991061978026,4.21962071731931,0,0.252470927204373,0,0,0,0,0,0,0,0,0.395287777946524,0,0,0,0,0,0,0.242780636154981,0,0,0,0,0,0,0,0,0,0,0,0.18006109403131,0.388076051348264,0,0,0.356737635204141,0.164549020602121,0,0,0,0,0,0,0.0603129249281559,0.238744688006273,0.164140899745061,0,2.22510362412612,0,0,0,0,0,0,0,0,0,0,0,0.406638934253697,0.540026704109006,0.209088296014469,0,0.134864346384821,0.0826534557253359,0,0.388844919875379,0,0,0,0,0,0.129159823477731,0,0.117357238645754,0,0,0,0,0,0,0.102710957164827,0,0,0,0,0,0,0,0.100826185136841,0,0,0,0.226730383615211,0,0,0,0,0,0,0,0,0.564751842617067,1.84130094602871,1.71868654031819,0.859265911718438,0.685082519770642,0.755393897389701,0.675022500231806,0,0.453142408984205,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0936415074698824,0,0,0,0,0,0,0,0,0,0,0.145346416632329,0,0,0,0.263069711437843,0,0,0,0,0,0,0,0.249810577937946,0.233931608445408,0,0.382576664137687,0,0 | |phase1_expression=0.480446541314382,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.202475267389826,0,0,0,0,0.0850432901510698,0,0,0,0,0,0,0,0.190023419456374,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.210324961351382,1.71390590642282,1.98781686856452,0.122490799214954,0.191690942036473,0,5.50579404996943,1.78762273319263,1.22885226604995,0,0,0,2.51264699101243,1.12552522006336,1.06958773443767,0.294628585473668,0.711858403995515,0,1.13589289999776,0.453429360640713,0,0,0,0,0,0,0.140444420131752,0,0,0,1.12674735821344,0,0,0,0,0,0,0.11418387971906,0,0,0,0,0.230615497256059,0.150722640552623,0,0.125666591329675,0.247194967734374,0,0,0.161766849947409,0,0,0,0.585561594023094,0.83778682725382,0,0,0,0,0.748953197024114,0,0,0.521472960576829,0.255715457330331,0.41557608911912,1.78465389374533,0,0,0,0,0,0,0,0,0,0.384341160854549,0.0937017245597288,0.258703370739016,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.210289948564127,0,0,0,0,0,0,0,0,0.190225626112559,0,0,0,0,0,0,0,0,0,0,1.1270773567308,0,0.193952487167626,0.140271639780637,0.0632365371242573,0,0,0.123397163921801,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.159454768657487,0,0,0.144649058581512,0,0,0,0,2.88991061978026,4.21962071731931,0,0.252470927204373,0,0,0,0,0,0,0,0,0.395287777946524,0,0,0,0,0,0,0.242780636154981,0,0,0,0,0,0,0,0,0,0,0,0.18006109403131,0.388076051348264,0,0,0.356737635204141,0.164549020602121,0,0,0,0,0,0,0.0603129249281559,0.238744688006273,0.164140899745061,0,2.22510362412612,0,0,0,0,0,0,0,0,0,0,0,0.406638934253697,0.540026704109006,0.209088296014469,0,0.134864346384821,0.0826534557253359,0,0.388844919875379,0,0,0,0,0,0.129159823477731,0,0.117357238645754,0,0,0,0,0,0,0.102710957164827,0,0,0,0,0,0,0,0.100826185136841,0,0,0,0.226730383615211,0,0,0,0,0,0,0,0,0.564751842617067,1.84130094602871,1.71868654031819,0.859265911718438,0.685082519770642,0.755393897389701,0.675022500231806,0,0.453142408984205,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0936415074698824,0,0,0,0,0,0,0,0,0,0,0.145346416632329,0,0,0,0.263069711437843,0,0,0,0,0,0,0,0.249810577937946,0.233931608445408,0,0.382576664137687,0,0 | ||
|short_description=p5@Ugt8a | |short_description=p5@Ugt8a | ||
}} | }} |
Latest revision as of 13:43, 1 October 2015
Short description: | p5@Ugt8a |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_5_at_Ugt8a_5end |
Coexpression cluster: | MCL_coexpression_mm9:20 |
Association with transcript: | 13bp_to_ENSMUST00000057944, NM_011674, uc008rfz.1, uc008rgb.1_5end |
EntrezGene: | Ugt8a |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
raphe nuclei neuron | 1.20e-16 | 3 |
neuron of the substantia nigra | 8.08e-16 | 3 |
CNS neuron (sensu Vertebrata) | 1.20e-13 | 23 |
neuroblast (sensu Vertebrata) | 1.20e-13 | 23 |
neuron of the dorsal spinal cord | 1.67e-11 | 2 |
ectodermal cell | 1.92e-10 | 44 |
neurectodermal cell | 1.92e-10 | 44 |
neuron | 3.09e-09 | 33 |
neuronal stem cell | 3.09e-09 | 33 |
neuroblast | 3.09e-09 | 33 |
electrically signaling cell | 3.09e-09 | 33 |
neural cell | 1.12e-08 | 43 |
electrically responsive cell | 1.14e-07 | 39 |
electrically active cell | 1.14e-07 | 39 |
Ontology term | p-value | n |
---|---|---|
raphe nuclei | 1.20e-16 | 3 |
reticular formation | 1.20e-16 | 3 |
substantia nigra | 8.08e-16 | 3 |
telencephalic nucleus | 8.08e-16 | 3 |
midbrain nucleus | 8.08e-16 | 3 |
neural nucleus | 8.08e-16 | 3 |
nucleus of brain | 8.08e-16 | 3 |
regional part of nervous system | 9.40e-15 | 54 |
nervous system | 7.25e-14 | 75 |
central nervous system | 2.55e-12 | 73 |
medulla oblongata | 3.84e-12 | 2 |
brainstem | 3.84e-12 | 2 |
myelencephalon | 3.84e-12 | 2 |
future myelencephalon | 3.84e-12 | 2 |
ectoderm-derived structure | 3.90e-12 | 95 |
ectoderm | 3.90e-12 | 95 |
presumptive ectoderm | 3.90e-12 | 95 |
regional part of midbrain | 5.16e-12 | 4 |
midbrain | 5.16e-12 | 4 |
presumptive midbrain | 5.16e-12 | 4 |
midbrain neural tube | 5.16e-12 | 4 |
dorsal horn of spinal cord | 1.67e-11 | 2 |
posterior neural tube | 3.11e-11 | 12 |
chordal neural plate | 3.11e-11 | 12 |
neural tube | 8.73e-11 | 52 |
neural rod | 8.73e-11 | 52 |
future spinal cord | 8.73e-11 | 52 |
neural keel | 8.73e-11 | 52 |
ecto-epithelium | 1.10e-08 | 73 |
spinal cord | 1.45e-08 | 6 |
dorsal region element | 1.45e-08 | 6 |
dorsum | 1.45e-08 | 6 |
neurectoderm | 1.82e-08 | 64 |
neural plate | 1.82e-08 | 64 |
presumptive neural plate | 1.82e-08 | 64 |
gray matter | 8.09e-07 | 34 |