CL:0002518: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{CL
|id=CL:0002518
|name=kidney epithelial cell
|namespace=cell
|def="An epithelial cell of the kidney." [GOC:tfm, KUPO:SJ]
|xref=KUPO:0001019
|is_a=CL:0000066;;CL:1000...") |
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{{CL | {{CL | ||
| | |alt_id= | ||
|comment= | |comment= | ||
|created_by=tmeehan | |created_by=tmeehan | ||
| | |def="An epithelial cell of the kidney." [GOC:tfm, KUPO:SJ] | ||
|derives_from= | |derives_from= | ||
|develops_from= | |develops_from= | ||
|disjoint_from= | |||
|has_quality= | |has_quality= | ||
|id=CL:0002518 | |||
|is_a=CL:0000066 ;;CL:1000497 | |||
|is_obsolete= | |||
|located_in= | |located_in= | ||
|name=kidney epithelial cell | |||
|namespace=FANTOM | |||
|obo_creation_date=2011-02-08T10:46:34Z | |||
|part_of=UBERON:0002113 | |part_of=UBERON:0002113 | ||
|preceded_by= | |||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/cl.owl | |||
|subset= | |||
|synonym= | |||
|union_of= | |||
|xref=KUPO:0001019 | |||
}} | }} | ||
Latest revision as of 16:43, 12 September 2014
| Name: | kidney epithelial cell | ||
|---|---|---|---|
| Namespace: | FANTOM | ||
| Definition: | "An epithelial cell of the kidney." [GOC:tfm, KUPO:SJ] | ||
| Xrefs: |
| ||
| Created by: | tmeehan | ||
| Creation date: | 2011-02-08T10:46:34Z |
Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | CL:0000066(epithelial cell),CL:1000497(kidney cell) |
|---|---|
| part_of: | UBERON:0002113(kidney) |
Children
| is a: | CL:0002584 (renal cortical epithelial cell),CL:1000449 (epithelial cell of nephron) |
|---|---|
| derives from: | FF:0000115 (mouse kidney epithelial cell sample),FF:0100383 (renal cell carcinoma cell line sample) |
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.
Human (Homo sapiens)
- 10411-106B6 (renal cell carcinoma cell line:OS-RC-2)
- 10466-106H7
- 10471-106I3 (renal cell carcinoma cell line:TUHR10TKB)
- 10517-107E4
- 10518-107E5
- 10519-107E6
- 10540-107G9
- 11514-119H2 (Renal Glomerular Endothelial Cells, donor1)
- 11515-119H3 (Renal Proximal Tubular Epithelial Cell, donor1)
- 11516-119H4 (Renal Cortical Epithelial Cells, donor1)
... further results Mouse (Mus musculus)
- 10411-106B6 (renal cell carcinoma cell line:OS-RC-2)
- 10466-106H7
- 10471-106I3 (renal cell carcinoma cell line:TUHR10TKB)
- 10517-107E4
- 10518-107E5
- 10519-107E6
- 10540-107G9
- 11514-119H2 (Renal Glomerular Endothelial Cells, donor1)
- 11515-119H3 (Renal Proximal Tubular Epithelial Cell, donor1)
- 11516-119H4 (Renal Cortical Epithelial Cells, donor1)
Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0002518 (kidney epithelial cell), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 1.22e-81 | FFCP PHASE2:Hg19::chr10:102495147..102495159,+#_fd6303671d79d8e28d27fb833a402169 | p4@PAX2 |
| 1.22e-81 | FFCP PHASE1:Hg19::chr10:102495147..102495159,+#_fd6303671d79d8e28d27fb833a402169 | p4@PAX2 |
| 3.01e-77 | FFCP PHASE1:Hg19::chr2:693380..693398,+#_aaab409a0434b23cdc835860755d5cf4 | p@chr2:693380..693398, + |
| 3.01e-77 | FFCP PHASE2:Hg19::chr2:693380..693398,+#_aaab409a0434b23cdc835860755d5cf4 | p@chr2:693380..693398, + |
| 8.45e-77 | FFCP PHASE2:Hg19::chr7:27219833..27219845,-#_f6eb67eeab32ca406f078c86da235b78 | p7@HOXA10 |
| 8.45e-77 | FFCP PHASE1:Hg19::chr7:27219833..27219845,-#_f6eb67eeab32ca406f078c86da235b78 | p7@HOXA10 |
| 1.12e-73 | FFCP PHASE2:Hg19::chr15:66420804..66420837,-#_6d4af3144c41fde6f8b2dab661dc444d | p4@MEGF11 |
| 1.12e-73 | FFCP PHASE1:Hg19::chr15:66420804..66420837,-#_6d4af3144c41fde6f8b2dab661dc444d | p4@MEGF11 |
| 1.5e-71 | FFCP PHASE1:Hg19::chr1:1100457..1100470,+#_72f6d0196bfa64ec6b03defa5114958c | p@chr1:1100457..1100470, + |
| 1.5e-71 | FFCP PHASE2:Hg19::chr1:1100457..1100470,+#_72f6d0196bfa64ec6b03defa5114958c | p@chr1:1100457..1100470, + |
| 7.66e-69 | FFCP PHASE2:Hg19::chr1:81001398..81001426,+#_aad4bab42b1f24132143c841b4f3c064 | p1@ENST00000418041, p1@ENST00000443104 |
| 7.66e-69 | FFCP PHASE1:Hg19::chr1:81001398..81001426,+#_aad4bab42b1f24132143c841b4f3c064 | p1@ENST00000418041, p1@ENST00000443104 |
| 1.69e-67 | FFCP PHASE2:Hg19::chr9:133986782..133986794,+#_6e442b703c5f23abe90b12fcfafb5c79 | p4@AIF1L |
| 1.69e-67 | FFCP PHASE1:Hg19::chr9:133986782..133986794,+#_6e442b703c5f23abe90b12fcfafb5c79 | p4@AIF1L |
| 4.89e-63 | FFCP PHASE2:Hg19::chr18:3456189..3456200,+#_c9e66840ae9be86867506e03743384b2 | p@chr18:3456189..3456200, + |
| 4.89e-63 | FFCP PHASE1:Hg19::chr18:3456189..3456200,+#_c9e66840ae9be86867506e03743384b2 | p@chr18:3456189..3456200, + |
| 5.16e-63 | FFCP PHASE1:Hg19::chr21:41029235..41029269,+#_acddd957d8d400ab3db6d5c5dbb860a9 | p2@B3GALT5 |
| 5.16e-63 | FFCP PHASE2:Hg19::chr21:41029235..41029269,+#_acddd957d8d400ab3db6d5c5dbb860a9 | p2@B3GALT5 |
| 1.46e-62 | FFCP PHASE1:Hg19::chr10:102505954..102505973,+#_2847f74ba3fd15b75918fb2961e27d66 | p3@PAX2 |
| 1.46e-62 | FFCP PHASE2:Hg19::chr10:102505954..102505973,+#_2847f74ba3fd15b75918fb2961e27d66 | p3@PAX2 |
| 7.39e-61 | FFCP PHASE2:Hg19::chr17:36104873..36104903,-#_c47dc884870d57af0bb4454fad8f93b5 | p3@HNF1B |
| 7.39e-61 | FFCP PHASE1:Hg19::chr17:36104873..36104903,-#_c47dc884870d57af0bb4454fad8f93b5 | p3@HNF1B |
| 1.5e-58 | FFCP PHASE1:Hg19::chr20:6033532..6033548,-#_c96a1ab1273c6671912d19afec2d4e6d | p2@AB527789 |
| 1.5e-58 | FFCP PHASE2:Hg19::chr20:6033532..6033548,-#_c96a1ab1273c6671912d19afec2d4e6d | p2@AB527789 |
| 7.19e-55 | FFCP PHASE1:Hg19::chr16:86768403..86768437,+#_d2404cc7130c1bd95ab0ef60c73d1cf4 | p@chr16:86768403..86768437, + |
| 7.19e-55 | FFCP PHASE2:Hg19::chr16:86768403..86768437,+#_d2404cc7130c1bd95ab0ef60c73d1cf4 | p@chr16:86768403..86768437, + |
| 1.07e-54 | FFCP PHASE1:Hg19::chr7:7606139..7606151,-#_1b30eaa9bd4a1ae95073e04db46fba2d | p@chr7:7606139..7606151, - |
| 1.07e-54 | FFCP PHASE2:Hg19::chr7:7606139..7606151,-#_1b30eaa9bd4a1ae95073e04db46fba2d | p@chr7:7606139..7606151, - |
| 8.92e-54 | FFCP PHASE2:Hg19::chr21:46826248..46826282,-#_f59ebc10439bb03c918e3eb650267199 | p@chr21:46826248..46826282, - |
| 8.92e-54 | FFCP PHASE1:Hg19::chr21:46826248..46826282,-#_f59ebc10439bb03c918e3eb650267199 | p@chr21:46826248..46826282, - |
| 5.64e-52 | FFCP PHASE2:Hg19::chr20:6034607..6034616,-#_8625bf16a60167ae84462921d8131832 | p6@LRRN4 |
| 5.64e-52 | FFCP PHASE1:Hg19::chr20:6034607..6034616,-#_8625bf16a60167ae84462921d8131832 | p6@LRRN4 |
| 1.2e-51 | FFCP PHASE2:Hg19::chr10:102505493..102505546,+#_f65dc10814fd407d7e32e396a4cf9f9b | p2@PAX2 |
| 1.2e-51 | FFCP PHASE1:Hg19::chr10:102505493..102505546,+#_f65dc10814fd407d7e32e396a4cf9f9b | p2@PAX2 |
| 3.69e-51 | FFCP PHASE1:Hg19::chr9:119741711..119741743,-#_11226923ee5a99fbe77b078330a67d6b | p@chr9:119741711..119741743, - |
| 3.69e-51 | FFCP PHASE2:Hg19::chr9:119741711..119741743,-#_11226923ee5a99fbe77b078330a67d6b | p@chr9:119741711..119741743, - |
| 4.43e-51 | FFCP PHASE1:Hg19::chr5:74244100..74244117,+#_ed31e47c98410e9551f5c3075d6ab5a1 | p@chr5:74244100..74244117, + |
| 4.43e-51 | FFCP PHASE2:Hg19::chr5:74244100..74244117,+#_ed31e47c98410e9551f5c3075d6ab5a1 | p@chr5:74244100..74244117, + |
| 1.34e-48 | FFCP PHASE1:Hg19::chr16:86604624..86604648,+#_b6ff3cbdb93851c23210cd6cdee31b1c | p@chr16:86604624..86604648, + |
| 1.34e-48 | FFCP PHASE2:Hg19::chr16:86604624..86604648,+#_b6ff3cbdb93851c23210cd6cdee31b1c | p@chr16:86604624..86604648, + |
| 1.53e-46 | FFCP PHASE1:Hg19::chr16:3068288..3068312,-#_15a178f0e1f1219edff1295374839adf | p2@CLDN6 |
| 1.53e-46 | FFCP PHASE2:Hg19::chr16:3068288..3068312,-#_15a178f0e1f1219edff1295374839adf | p2@CLDN6 |
| 2.27e-46 | FFCP PHASE1:Hg19::chr20:6034576..6034592,-#_81e93a824c378269080c598b41bdf6b5 | p3@LRRN4 |
| 2.27e-46 | FFCP PHASE2:Hg19::chr20:6034576..6034592,-#_81e93a824c378269080c598b41bdf6b5 | p3@LRRN4 |
| 8.5e-46 | FFCP PHASE2:Hg19::chr17:36065029..36065045,-#_5837203a329c5753b8f41cb6993fd5fd | p@chr17:36065029..36065045, - |
| 8.5e-46 | FFCP PHASE1:Hg19::chr17:36065029..36065045,-#_5837203a329c5753b8f41cb6993fd5fd | p@chr17:36065029..36065045, - |
| 1.97e-44 | FFCP PHASE1:Hg19::chr9:133986807..133986821,+#_e4a290fd331ba9cf3b68e344c45d3e9e | p3@AIF1L |
| 1.97e-44 | FFCP PHASE2:Hg19::chr9:133986807..133986821,+#_e4a290fd331ba9cf3b68e344c45d3e9e | p3@AIF1L |
| 1.2e-43 | FFCP PHASE1:Hg19::chr7:140227349..140227360,-#_83c5ddb283600d797b28f55a1cc3fb22 | p@chr7:140227349..140227360, - |
| 1.2e-43 | FFCP PHASE2:Hg19::chr7:140227349..140227360,-#_83c5ddb283600d797b28f55a1cc3fb22 | p@chr7:140227349..140227360, - |
| 1.96e-43 | FFCP PHASE2:Hg19::chr7:27219754..27219759,-#_03dc507f633fc3cf9f0f659c8daa446d | p16@HOXA10 |
| 1.96e-43 | FFCP PHASE1:Hg19::chr7:27219754..27219759,-#_03dc507f633fc3cf9f0f659c8daa446d | p16@HOXA10 |
| 2.02e-43 | FFCP PHASE1:Hg19::chr20:6034672..6034714,-#_2978186d33d847cd43239f8ea25b7572 | p2@LRRN4 |
| 2.02e-43 | FFCP PHASE2:Hg19::chr20:6034672..6034714,-#_2978186d33d847cd43239f8ea25b7572 | p2@LRRN4 |
| 3.63e-43 | FFCP PHASE2:Hg19::chr10:91043420..91043437,+#_3c60c31af2a90ab0a3c3e87ce7ebc846 | p1@ENST00000444849 |
| 3.63e-43 | FFCP PHASE1:Hg19::chr10:91043420..91043437,+#_3c60c31af2a90ab0a3c3e87ce7ebc846 | p1@ENST00000444849 |
| 1.11e-42 | FFCP PHASE2:Hg19::chr11:117695415..117695426,-#_410c9adc934e9990cfaec5da4da5a9dd | p3@FXYD2 |
| 1.11e-42 | FFCP PHASE1:Hg19::chr11:117695415..117695426,-#_410c9adc934e9990cfaec5da4da5a9dd | p3@FXYD2 |
| 7.78e-42 | FFCP PHASE1:Hg19::chr7:140227303..140227330,-#_f16a38cd301dbc2fbdaf956001bf3e33 | p@chr7:140227303..140227330, - |
| 7.78e-42 | FFCP PHASE2:Hg19::chr7:140227303..140227330,-#_f16a38cd301dbc2fbdaf956001bf3e33 | p@chr7:140227303..140227330, - |
| 1.15e-41 | FFCP PHASE1:Hg19::chr2:165603346..165603357,-#_187c2b3162345d87b83a27e3197bfde7 | p@chr2:165603346..165603357, - |
| 1.15e-41 | FFCP PHASE2:Hg19::chr2:165603346..165603357,-#_187c2b3162345d87b83a27e3197bfde7 | p@chr2:165603346..165603357, - |
| 3.58e-41 | FFCP PHASE2:Hg19::chr20:6033140..6033181,-#_0fdd57809509881e7d8abc9a46f6dd83 | p1@AB527789 |
| 3.58e-41 | FFCP PHASE1:Hg19::chr20:6033140..6033181,-#_0fdd57809509881e7d8abc9a46f6dd83 | p1@AB527789 |
| 3.25e-40 | FFCP PHASE2:Hg19::chr20:6819236..6819281,+#_b9f8a8a5c15d895d511ed139f35168b2 | p@chr20:6819236..6819281, + |
| 3.25e-40 | FFCP PHASE1:Hg19::chr20:6819236..6819281,+#_b9f8a8a5c15d895d511ed139f35168b2 | p@chr20:6819236..6819281, + |
| 2.67e-38 | FFCP PHASE2:Hg19::chr14:57960456..57960478,-#_e7d020782b59e8e85802a5f4cfb0e07b | p2@C14orf105 |
| 2.67e-38 | FFCP PHASE1:Hg19::chr14:57960456..57960478,-#_e7d020782b59e8e85802a5f4cfb0e07b | p2@C14orf105 |
| 6.71e-38 | FFCP PHASE2:Hg19::chr9:133986740..133986750,+#_c9d6679da85948a9a103b583aa61e2a1 | p7@AIF1L |
| 6.71e-38 | FFCP PHASE1:Hg19::chr9:133986740..133986750,+#_c9d6679da85948a9a103b583aa61e2a1 | p7@AIF1L |
| 6.87e-38 | FFCP PHASE2:Hg19::chr1:47655966..47655990,-#_e6ef47ce923f09f4c6707626fca7b6f8 | p2@PDZK1IP1 |
| 6.87e-38 | FFCP PHASE1:Hg19::chr1:47655966..47655990,-#_e6ef47ce923f09f4c6707626fca7b6f8 | p2@PDZK1IP1 |
| 1.38e-37 | FFCP PHASE2:Hg19::chr15:85403302..85403304,+#_4e10edbe374a47e69b6584624e637446 | p@chr15:85403302..85403304, + |
| 1.38e-37 | FFCP PHASE1:Hg19::chr15:85403302..85403304,+#_4e10edbe374a47e69b6584624e637446 | p@chr15:85403302..85403304, + |
| 2.5e-37 | FFCP PHASE2:Hg19::chr7:98453821..98453843,-#_f0e8c2435655ba7d323c74af1da77edb | p@chr7:98453821..98453843, - |
| 2.5e-37 | FFCP PHASE1:Hg19::chr7:98453821..98453843,-#_f0e8c2435655ba7d323c74af1da77edb | p@chr7:98453821..98453843, - |
| 2.78e-37 | FFCP PHASE2:Hg19::chr8:21911054..21911086,+#_defff0943301fc453f322180c5c24b3a | p9@EPB49 |
| 2.78e-37 | FFCP PHASE1:Hg19::chr8:21911054..21911086,+#_defff0943301fc453f322180c5c24b3a | p9@EPB49 |
| 2.84e-37 | FFCP PHASE1:Hg19::chr20:6034598..6034603,-#_3c89692eabf79bbb9970908bf62f66d3 | p7@LRRN4 |
| 2.84e-37 | FFCP PHASE2:Hg19::chr20:6034598..6034603,-#_3c89692eabf79bbb9970908bf62f66d3 | p7@LRRN4 |
| 1.18e-36 | FFCP PHASE2:Hg19::chr7:47579188..47579231,-#_d3ff4ae9cf64eebd89c8aad9f162e342 | p13@TNS3 |
| 1.18e-36 | FFCP PHASE1:Hg19::chr7:47579188..47579231,-#_d3ff4ae9cf64eebd89c8aad9f162e342 | p13@TNS3 |
| 1.37e-36 | FFCP PHASE1:Hg19::chr10:102495136..102495146,+#_faaffb4472bca2a7584ef9dab81f371f | p8@PAX2 |
| 1.37e-36 | FFCP PHASE2:Hg19::chr10:102495136..102495146,+#_faaffb4472bca2a7584ef9dab81f371f | p8@PAX2 |
| 1.53e-36 | FFCP PHASE1:Hg19::chr2:108994466..108994485,+#_bb9fe090de402eb7871ae0eaa615468c | p3@SULT1C4 |
| 1.53e-36 | FFCP PHASE2:Hg19::chr2:108994466..108994485,+#_bb9fe090de402eb7871ae0eaa615468c | p3@SULT1C4 |
| 4.44e-36 | FFCP PHASE1:Hg19::chr9:71735910..71735923,+#_e914027b3048c525ea2bbbb3d6b03414 | p16@TJP2 |
| 4.44e-36 | FFCP PHASE2:Hg19::chr9:71735910..71735923,+#_e914027b3048c525ea2bbbb3d6b03414 | p16@TJP2 |
| 8.2e-36 | FFCP PHASE1:Hg19::chr1:94713418..94713436,+#_d8d5d5288531a9f102a86774bcb29c44 | p1@ENST00000413103 |
| 8.2e-36 | FFCP PHASE2:Hg19::chr1:94713418..94713436,+#_d8d5d5288531a9f102a86774bcb29c44 | p1@ENST00000413103 |
| 1.09e-35 | FFCP PHASE2:Hg19::chr1:20465872..20465881,+#_e2cf222a0b95d50c0f531303b517e283 | p2@PLA2G2F |
| 1.09e-35 | FFCP PHASE1:Hg19::chr1:20465872..20465881,+#_e2cf222a0b95d50c0f531303b517e283 | p2@PLA2G2F |
| 1.53e-35 | FFCP PHASE1:Hg19::chr20:6034828..6034857,-#_aa183a0ee96c12e8c20d5df1f3239363 | p5@LRRN4 |
| 1.53e-35 | FFCP PHASE2:Hg19::chr20:6034828..6034857,-#_aa183a0ee96c12e8c20d5df1f3239363 | p5@LRRN4 |
| 1.98e-35 | FFCP PHASE1:Hg19::chr11:117695449..117695466,-#_c0cfcaed34505dca3a145746267de19c | p1@FXYD2 |
| 1.98e-35 | FFCP PHASE2:Hg19::chr11:117695449..117695466,-#_c0cfcaed34505dca3a145746267de19c | p1@FXYD2 |
| 3.12e-35 | FFCP PHASE2:Hg19::chr2:31361543..31361564,-#_d4cb262410742000f32f0bc324cd3d21 | p5@GALNT14 |
| 3.12e-35 | FFCP PHASE1:Hg19::chr2:31361543..31361564,-#_d4cb262410742000f32f0bc324cd3d21 | p5@GALNT14 |
| 3.29e-35 | FFCP PHASE2:Hg19::chr2:31361503..31361541,-#_4df94c09d4ad1317671c858d4c7e5b21 | p4@GALNT14 |
| 3.29e-35 | FFCP PHASE1:Hg19::chr2:31361503..31361541,-#_4df94c09d4ad1317671c858d4c7e5b21 | p4@GALNT14 |
