UBERON:0001873: Difference between revisions
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|def="Nucleus of brain which is an elongated crescent-shaped mass lying parallel and adjacent to the lateral ventricle throughout its extent." [Wikipedia:Caudate_nucleus] | |def="Nucleus of brain which is an elongated crescent-shaped mass lying parallel and adjacent to the lateral ventricle throughout its extent." [Wikipedia:Caudate_nucleus] | ||
|xref=BM:Tel-CA;;BTO:0000211;;EFO:0000907;;EMAPA:18207;;EV:0100185;;FMA:61833;;GAID:670;;http://upload.wikimedia.org/wikipedia/commons/thumb/9/91/Telencephalon-Horiconatal.jpg/200px-Telencephalon-Horiconatal.jpg;;MA:0000894;;MAT:0000513;;MESH:A.08.186.211.730.885.105.487.550.184;;ncithesaurus:Caudate_Nucleus;;NIF_GrossAnatomy:birnlex_1373;;OpenCyc:Mx4rvvyAjJwpEbGdrcN5Y29ycA;;SCTID:279297002 | |xref=BM:Tel-CA;;BTO:0000211;;EFO:0000907;;EMAPA:18207;;EV:0100185;;FMA:61833;;GAID:670;;http://upload.wikimedia.org/wikipedia/commons/9/91/Telencephalon-Horiconatal.jpg;;http://upload.wikimedia.org/wikipedia/commons/thumb/9/91/Telencephalon-Horiconatal.jpg/200px-Telencephalon-Horiconatal.jpg;;MA:0000894;;MAT:0000513;;MESH:A.08.186.211.730.885.105.487.550.184;;ncithesaurus:Caudate_Nucleus;;NIF_GrossAnatomy:birnlex_1373;;OpenCyc:Mx4rvvyAjJwpEbGdrcN5Y29ycA;;SCTID:279297002 | ||
|is_a= | |is_a=UBERON:0009663 | ||
|synonym="caudatus" EXACT [];;"nucleus caudatus" RELATED [BTO:0000211] | |synonym="caudatus" EXACT [];;"nucleus caudatus" RELATED [BTO:0000211];;"nucleus caudatus" RELATED LATIN [Wikipedia:Caudate_nucleus] | ||
|comment=CHECK - rodents. The caudate nucleus and putamen are separated by a clear white matter bundle in most species but not in rodents (MM) | |comment=CHECK - rodents. The caudate nucleus and putamen are separated by a clear white matter bundle in most species but not in rodents (MM) | ||
|alt_id=UBERON:FMA_61833-MA_0000894 | |alt_id=UBERON:FMA_61833-MA_0000894 | ||
| Line 14: | Line 14: | ||
|obo_creation_date= | |obo_creation_date= | ||
|subset=uberon_slim | |subset=uberon_slim | ||
|derives_from= | |derives_from= | ||
|develops_from= | |develops_from= | ||
|has_quality= | |has_quality= | ||
|located_in= | |located_in= | ||
|part_of= | |part_of= | ||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | |property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | ||
|is_obsolete= | |is_obsolete= | ||
|preceded_by= | |preceded_by= | ||
}} | }} | ||
Revision as of 17:00, 26 June 2012
| Name: | caudate nucleus | ||
|---|---|---|---|
| Definition: | "Nucleus of brain which is an elongated crescent-shaped mass lying parallel and adjacent to the lateral ventricle throughout its extent." [Wikipedia:Caudate_nucleus] | ||
| Xrefs: |
| ||
| Synonyms: |
"caudatus" EXACT [] "nucleus caudatus" RELATED [BTO:0000211] "nucleus caudatus" RELATED LATIN [Wikipedia:Caudate_nucleus] | ||
| Comments: | CHECK - rodents. The caudate nucleus and putamen are separated by a clear white matter bundle in most species but not in rodents (MM) | ||
| Alt_id: | UBERON:FMA_61833-MA_0000894 | ||
| Subset: | uberon_slim |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0009663(telencephalic nucleus) |
|---|
Children
| is a: | FF:10354-105E3 (caudate nucleus, newborn, donor10223) |
|---|---|
| derives from: | FF:0010164 (human caudate nucleus - adult donor sample) |
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 10164-103B2 (caudate nucleus, adult, donor10252)
- 10177-103C6 (caudate nucleus - adult, donor10196)
- 10354-105E3 (caudate nucleus, newborn, donor10223)
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0001873 (caudate nucleus), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 4.61e-131 | FFCP PHASE2:Hg19::chr5:119669209..119669216,-#_e61d0aff9b289bd01b2859c4dfdddb83 | p5@ENST00000514240 |
| 4.61e-131 | FFCP PHASE1:Hg19::chr17:77721568..77721571,+#_e61d0aff9b289bd01b2859c4dfdddb83 | p@chr17:77721568..77721571, + |
| 4.61e-131 | FFCP PHASE1:Hg19::chr17:7271778..7271784,+#_e61d0aff9b289bd01b2859c4dfdddb83 | p@chr17:7271778..7271784, + |
| 4.61e-131 | FFCP PHASE2:Hg19::chr18:54898506..54898515,+#_e61d0aff9b289bd01b2859c4dfdddb83 | p@chr18:54898506..54898515, + |
| 4.61e-131 | FFCP PHASE1:Hg19::chr7:67237110..67237117,+#_e61d0aff9b289bd01b2859c4dfdddb83 | p@chr7:67237110..67237117, + |
| 4.61e-131 | FFCP PHASE2:Hg19::chr7:67237110..67237117,+#_e61d0aff9b289bd01b2859c4dfdddb83 | p@chr7:67237110..67237117, + |
| 4.61e-131 | FFCP PHASE2:Hg19::chr17:7271778..7271784,+#_e61d0aff9b289bd01b2859c4dfdddb83 | p@chr17:7271778..7271784, + |
| 4.61e-131 | FFCP PHASE1:Hg19::chr5:119669209..119669216,-#_e61d0aff9b289bd01b2859c4dfdddb83 | p5@ENST00000514240 |
| 4.61e-131 | FFCP PHASE2:Hg19::chr17:77721568..77721571,+#_e61d0aff9b289bd01b2859c4dfdddb83 | p@chr17:77721568..77721571, + |
| 4.61e-131 | FFCP PHASE1:Hg19::chr18:54898506..54898515,+#_e61d0aff9b289bd01b2859c4dfdddb83 | p@chr18:54898506..54898515, + |
| 8.99e-131 | FFCP PHASE1:Hg19::chr18:47967443..47967452,-#_4f3a80df92eb5ddf2b6b849d3b364484 | p@chr18:47967443..47967452, - |
| 8.99e-131 | FFCP PHASE2:Hg19::chr18:47967443..47967452,-#_4f3a80df92eb5ddf2b6b849d3b364484 | p@chr18:47967443..47967452, - |
| 1.75e-130 | FFCP PHASE2:Hg19::chr1:182640923..182640935,-#_80737030f333a4de05f0a3246b73b3f2 | p6@RGS8 |
| 1.75e-130 | FFCP PHASE1:Hg19::chr1:182640923..182640935,-#_80737030f333a4de05f0a3246b73b3f2 | p6@RGS8 |
| 5.68e-99 | FFCP PHASE1:Hg19::chr16:645297..645302,+#_a823f485b745cc83d51d2ed12bc8f922 | p@chr16:645297..645302, + |
| 5.68e-99 | FFCP PHASE2:Hg19::chrX:45984754..45984763,+#_a823f485b745cc83d51d2ed12bc8f922 | p@chrX:45984754..45984763, + |
| 5.68e-99 | FFCP PHASE1:Hg19::chrX:45984754..45984763,+#_a823f485b745cc83d51d2ed12bc8f922 | p@chrX:45984754..45984763, + |
| 5.68e-99 | FFCP PHASE1:Hg19::chr13:112726433..112726446,+#_a823f485b745cc83d51d2ed12bc8f922 | p@chr13:112726433..112726446, + |
| 5.68e-99 | FFCP PHASE2:Hg19::chr22:28195426..28195433,-#_a823f485b745cc83d51d2ed12bc8f922 | p@chr22:28195426..28195433, - |
| 5.68e-99 | FFCP PHASE1:Hg19::chr22:28195426..28195433,-#_a823f485b745cc83d51d2ed12bc8f922 | p@chr22:28195426..28195433, - |
| 5.68e-99 | FFCP PHASE2:Hg19::chr16:645297..645302,+#_a823f485b745cc83d51d2ed12bc8f922 | p@chr16:645297..645302, + |
| 5.68e-99 | FFCP PHASE2:Hg19::chr13:112726433..112726446,+#_a823f485b745cc83d51d2ed12bc8f922 | p@chr13:112726433..112726446, + |
| 9.38e-99 | FFCP PHASE2:Hg19::chr7:131761558..131761590,-#_cc2e41e77c3552c206815225498ffd48 | p@chr7:131761558..131761590, - |
| 9.38e-99 | FFCP PHASE1:Hg19::chr18:47967428..47967437,-#_cc2e41e77c3552c206815225498ffd48 | p@chr18:47967428..47967437, - |
| 9.38e-99 | FFCP PHASE1:Hg19::chr12:6031299..6031315,-#_cc2e41e77c3552c206815225498ffd48 | p@chr12:6031299..6031315, - |
| 9.38e-99 | FFCP PHASE2:Hg19::chr2:152828264..152828299,-#_cc2e41e77c3552c206815225498ffd48 | p@chr2:152828264..152828299, - |
| 9.38e-99 | FFCP PHASE2:Hg19::chr12:6031299..6031315,-#_cc2e41e77c3552c206815225498ffd48 | p@chr12:6031299..6031315, - |
| 9.38e-99 | FFCP PHASE1:Hg19::chr2:152828264..152828299,-#_cc2e41e77c3552c206815225498ffd48 | p@chr2:152828264..152828299, - |
| 9.38e-99 | FFCP PHASE2:Hg19::chr18:47967428..47967437,-#_cc2e41e77c3552c206815225498ffd48 | p@chr18:47967428..47967437, - |
| 9.38e-99 | FFCP PHASE1:Hg19::chr7:131761558..131761590,-#_cc2e41e77c3552c206815225498ffd48 | p@chr7:131761558..131761590, - |
| 1.55e-98 | FFCP PHASE2:Hg19::chr6:36743426..36743433,-#_02faf90d3e6fb2fa125a4223be876b44 | p@chr6:36743426..36743433, - |
| 1.55e-98 | FFCP PHASE1:Hg19::chr2:86769939..86769942,-#_02faf90d3e6fb2fa125a4223be876b44 | p17@RNF103-CHMP3, p19@CHMP3 |
| 1.55e-98 | FFCP PHASE1:Hg19::chr6:36743426..36743433,-#_02faf90d3e6fb2fa125a4223be876b44 | p@chr6:36743426..36743433, - |
| 1.55e-98 | FFCP PHASE2:Hg19::chr7:24530137..24530142,+#_02faf90d3e6fb2fa125a4223be876b44 | p@chr7:24530137..24530142, + |
| 1.55e-98 | FFCP PHASE2:Hg19::chr18:24521807..24521809,+#_02faf90d3e6fb2fa125a4223be876b44 | p@chr18:24521807..24521809, + |
| 1.55e-98 | FFCP PHASE1:Hg19::chr7:24530137..24530142,+#_02faf90d3e6fb2fa125a4223be876b44 | p@chr7:24530137..24530142, + |
| 1.55e-98 | FFCP PHASE2:Hg19::chr1:234149057..234149066,+#_02faf90d3e6fb2fa125a4223be876b44 | p@chr1:234149057..234149066, + |
| 1.55e-98 | FFCP PHASE2:Hg19::chr3:35730760..35730766,+#_02faf90d3e6fb2fa125a4223be876b44 | p78@ARPP21 |
| 1.55e-98 | FFCP PHASE1:Hg19::chr3:35730760..35730766,+#_02faf90d3e6fb2fa125a4223be876b44 | p78@ARPP21 |
| 1.55e-98 | FFCP PHASE2:Hg19::chr3:154148047..154148051,-#_02faf90d3e6fb2fa125a4223be876b44 | p@chr3:154148047..154148051, - |
| 1.55e-98 | FFCP PHASE1:Hg19::chr1:234149057..234149066,+#_02faf90d3e6fb2fa125a4223be876b44 | p@chr1:234149057..234149066, + |
| 1.55e-98 | FFCP PHASE2:Hg19::chr10:560764..560769,-#_02faf90d3e6fb2fa125a4223be876b44 | p@chr10:560764..560769, - |
| 1.55e-98 | FFCP PHASE2:Hg19::chr2:10978182..10978189,-#_02faf90d3e6fb2fa125a4223be876b44 | p17@PDIA6 |
| 1.55e-98 | FFCP PHASE2:Hg19::chr14:74892961..74892962,-#_02faf90d3e6fb2fa125a4223be876b44 | p9@SYNDIG1L |
| 1.55e-98 | FFCP PHASE1:Hg19::chr3:154148047..154148051,-#_02faf90d3e6fb2fa125a4223be876b44 | p@chr3:154148047..154148051, - |
| 1.55e-98 | FFCP PHASE1:Hg19::chr2:10978182..10978189,-#_02faf90d3e6fb2fa125a4223be876b44 | p17@PDIA6 |
| 1.55e-98 | FFCP PHASE2:Hg19::chr1:31352916..31352926,-#_02faf90d3e6fb2fa125a4223be876b44 | p@chr1:31352916..31352926, - |
| 1.55e-98 | FFCP PHASE2:Hg19::chr8:19799565..19799589,-#_02faf90d3e6fb2fa125a4223be876b44 | p@chr8:19799565..19799589, - |
| 1.55e-98 | FFCP PHASE1:Hg19::chr1:31352916..31352926,-#_02faf90d3e6fb2fa125a4223be876b44 | p@chr1:31352916..31352926, - |
| 1.55e-98 | FFCP PHASE1:Hg19::chr8:19799565..19799589,-#_02faf90d3e6fb2fa125a4223be876b44 | p@chr8:19799565..19799589, - |
| 1.55e-98 | FFCP PHASE1:Hg19::chr10:560764..560769,-#_02faf90d3e6fb2fa125a4223be876b44 | p@chr10:560764..560769, - |
| 1.55e-98 | FFCP PHASE2:Hg19::chr10:560806..560813,-#_02faf90d3e6fb2fa125a4223be876b44 | p@chr10:560806..560813, - |
| 1.55e-98 | FFCP PHASE2:Hg19::chr1:31352969..31352970,-#_02faf90d3e6fb2fa125a4223be876b44 | p@chr1:31352969..31352970, - |
| 1.55e-98 | FFCP PHASE1:Hg19::chr18:24521807..24521809,+#_02faf90d3e6fb2fa125a4223be876b44 | p@chr18:24521807..24521809, + |
| 1.55e-98 | FFCP PHASE1:Hg19::chr1:31352969..31352970,-#_02faf90d3e6fb2fa125a4223be876b44 | p@chr1:31352969..31352970, - |
| 1.55e-98 | FFCP PHASE1:Hg19::chr10:560806..560813,-#_02faf90d3e6fb2fa125a4223be876b44 | p@chr10:560806..560813, - |
| 1.55e-98 | FFCP PHASE2:Hg19::chr1:234040273..234040278,+#_02faf90d3e6fb2fa125a4223be876b44 | p14@SLC35F3 |
| 1.55e-98 | FFCP PHASE1:Hg19::chr1:234040273..234040278,+#_02faf90d3e6fb2fa125a4223be876b44 | p14@SLC35F3 |
| 1.55e-98 | FFCP PHASE1:Hg19::chr14:74892961..74892962,-#_02faf90d3e6fb2fa125a4223be876b44 | p9@SYNDIG1L |
| 1.55e-98 | FFCP PHASE2:Hg19::chr2:86769939..86769942,-#_02faf90d3e6fb2fa125a4223be876b44 | p17@RNF103-CHMP3, p19@CHMP3 |
| 2.56e-98 | FFCP PHASE2:Hg19::chr14:78638610..78638621,+#_7cdd5a205690c9b4af2916a99e96acf3 | p@chr14:78638610..78638621, + |
| 2.56e-98 | FFCP PHASE1:Hg19::chr14:78638610..78638621,+#_7cdd5a205690c9b4af2916a99e96acf3 | p@chr14:78638610..78638621, + |
| 1.05e-79 | FFCP PHASE2:Hg19::chr6:19877308..19877326,-#_2890ca93226d7691862801194b3a309d | p@chr6:19877308..19877326, - |
| 1.05e-79 | FFCP PHASE1:Hg19::chr6:19877308..19877326,-#_2890ca93226d7691862801194b3a309d | p@chr6:19877308..19877326, - |
| 1.56e-79 | FFCP PHASE1:Hg19::chr17:19390211..19390223,+#_c15768462842d6c7591ae8de8a91bdbc | p@chr17:19390211..19390223, + |
| 1.56e-79 | FFCP PHASE1:Hg19::chr15:35546024..35546035,-#_c15768462842d6c7591ae8de8a91bdbc | p@chr15:35546024..35546035, - |
| 1.56e-79 | FFCP PHASE1:Hg19::chr4:72101966..72101969,+#_c15768462842d6c7591ae8de8a91bdbc | p21@SLC4A4 |
| 1.56e-79 | FFCP PHASE2:Hg19::chr4:72101966..72101969,+#_c15768462842d6c7591ae8de8a91bdbc | p21@SLC4A4 |
| 1.56e-79 | FFCP PHASE2:Hg19::chr15:35546024..35546035,-#_c15768462842d6c7591ae8de8a91bdbc | p@chr15:35546024..35546035, - |
| 1.56e-79 | FFCP PHASE2:Hg19::chr17:19390211..19390223,+#_c15768462842d6c7591ae8de8a91bdbc | p@chr17:19390211..19390223, + |
| 2.34e-79 | FFCP PHASE1:Hg19::chr2:3853961..3853984,+#_b09938184e66f19964900633fa8c2523 | p@chr2:3853961..3853984, + |
| 2.34e-79 | FFCP PHASE2:Hg19::chr20:9496091..9496106,+#_b09938184e66f19964900633fa8c2523 | p@chr20:9496091..9496106, + |
| 2.34e-79 | FFCP PHASE1:Hg19::chr20:9496091..9496106,+#_b09938184e66f19964900633fa8c2523 | p@chr20:9496091..9496106, + |
| 2.34e-79 | FFCP PHASE1:Hg19::chr12:117513131..117513155,-#_b09938184e66f19964900633fa8c2523 | p@chr12:117513131..117513155, - |
| 2.34e-79 | FFCP PHASE1:Hg19::chr2:127783377..127783391,+#_b09938184e66f19964900633fa8c2523 | p2@BC051739 |
| 2.34e-79 | FFCP PHASE2:Hg19::chr2:127783377..127783391,+#_b09938184e66f19964900633fa8c2523 | p2@BC051739 |
| 2.34e-79 | FFCP PHASE2:Hg19::chr12:117513131..117513155,-#_b09938184e66f19964900633fa8c2523 | p@chr12:117513131..117513155, - |
| 2.34e-79 | FFCP PHASE2:Hg19::chr2:3853961..3853984,+#_b09938184e66f19964900633fa8c2523 | p@chr2:3853961..3853984, + |
| 3.49e-79 | FFCP PHASE1:Hg19::chr1:177134234..177134239,-#_739326bfa73f8a55bd3c1d845ca4f9a2 | p14@ASTN1 |
| 3.49e-79 | FFCP PHASE2:Hg19::chr3:156008856..156008863,+#_739326bfa73f8a55bd3c1d845ca4f9a2 | p23@KCNAB1 |
| 3.49e-79 | FFCP PHASE1:Hg19::chr3:156008856..156008863,+#_739326bfa73f8a55bd3c1d845ca4f9a2 | p23@KCNAB1 |
| 3.49e-79 | FFCP PHASE2:Hg19::chr3:57807798..57807809,+#_739326bfa73f8a55bd3c1d845ca4f9a2 | p@chr3:57807798..57807809, + |
| 3.49e-79 | FFCP PHASE1:Hg19::chr10:97261874..97261887,-#_739326bfa73f8a55bd3c1d845ca4f9a2 | p@chr10:97261874..97261887, - |
| 3.49e-79 | FFCP PHASE1:Hg19::chr3:57807798..57807809,+#_739326bfa73f8a55bd3c1d845ca4f9a2 | p@chr3:57807798..57807809, + |
| 3.49e-79 | FFCP PHASE2:Hg19::chr8:57353666..57353675,-#_739326bfa73f8a55bd3c1d845ca4f9a2 | p@chr8:57353666..57353675, - |
| 3.49e-79 | FFCP PHASE1:Hg19::chr8:57353666..57353675,-#_739326bfa73f8a55bd3c1d845ca4f9a2 | p@chr8:57353666..57353675, - |
| 3.49e-79 | FFCP PHASE2:Hg19::chr10:97261874..97261887,-#_739326bfa73f8a55bd3c1d845ca4f9a2 | p@chr10:97261874..97261887, - |
| 3.49e-79 | FFCP PHASE2:Hg19::chr1:177134234..177134239,-#_739326bfa73f8a55bd3c1d845ca4f9a2 | p14@ASTN1 |
| 5.22e-79 | FFCP PHASE2:Hg19::chr14:74893023..74893028,-#_fa3c1c9659e861d59858c45221486eaa | p6@SYNDIG1L |
| 5.22e-79 | FFCP PHASE1:Hg19::chr14:74893023..74893028,-#_fa3c1c9659e861d59858c45221486eaa | p6@SYNDIG1L |
| 1.16e-78 | FFCP PHASE2:Hg19::chr4:16728994..16729009,+#_0f0e284cfaeb6d45f4604fc11f3d688a | p@chr4:16728994..16729009, + |
| 1.16e-78 | FFCP PHASE1:Hg19::chr4:16728994..16729009,+#_0f0e284cfaeb6d45f4604fc11f3d688a | p@chr4:16728994..16729009, + |
| 7.41e-67 | FFCP PHASE1:Hg19::chr14:101123580..101123593,+#_e30f76b3f8c67a3ab5725ecdac8f4f8b | p1@LINC00523 |
| 7.41e-67 | FFCP PHASE2:Hg19::chr8:57353676..57353688,-#_e30f76b3f8c67a3ab5725ecdac8f4f8b | p@chr8:57353676..57353688, - |
| 7.41e-67 | FFCP PHASE1:Hg19::chr8:57353676..57353688,-#_e30f76b3f8c67a3ab5725ecdac8f4f8b | p@chr8:57353676..57353688, - |
| 7.41e-67 | FFCP PHASE2:Hg19::chr7:111424575..111424587,-#_e30f76b3f8c67a3ab5725ecdac8f4f8b | p9@DOCK4 |
| 7.41e-67 | FFCP PHASE2:Hg19::chr14:101123580..101123593,+#_e30f76b3f8c67a3ab5725ecdac8f4f8b | p1@LINC00523 |
| 7.41e-67 | FFCP PHASE1:Hg19::chr7:111424575..111424587,-#_e30f76b3f8c67a3ab5725ecdac8f4f8b | p9@DOCK4 |
| 7.41e-67 | FFCP PHASE2:Hg19::chr3:85007662..85007678,+#_e30f76b3f8c67a3ab5725ecdac8f4f8b | p8@CADM2 |
| 7.41e-67 | FFCP PHASE1:Hg19::chr3:85007662..85007678,+#_e30f76b3f8c67a3ab5725ecdac8f4f8b | p8@CADM2 |
