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|name=otic capsule
|name=otic capsule
|namespace=
|namespace=
|def="The cartilage capsule surrounding the inner ear mechanism; in elasmobranchs, it remains cartilaginous in the adult; in the embryos of higher vertebrates, it is cartilaginous at first but later becomes bony (at approximately 23 weeks in humans)[Biology-Online]. Bilaterally paired cartilage encasing the semicircular canals of the inner ear[ZFA]." [http://medical-dictionary.thefreedictionary.com/otic+capsule, http://www.biology-online.org/dictionary/Otic_capsule, ZFA:0001500]
|def="The capsule surrounding the inner ear mechanism; in elasmobranchs, it remains cartilaginous in the adult; in the embryos of higher vertebrates, it is cartilaginous at first but later becomes bony (at approximately 23 weeks in humans)[Biology-Online]. Bilaterally paired cartilage encasing the semicircular canals of the inner ear[ZFA]." [http://medical-dictionary.thefreedictionary.com/otic+capsule, http://www.biology-online.org/dictionary/Otic_capsule, ZFA:0001500]
|xref=AAO:0010143;;EHDAA:4704;;EHDAA2:0001333;;EMAPA:17596;;SCTID:361515007;;VHOG:0000854
|xref=AAO:0010143;;SCTID:361515007;;VHOG:0000854
|is_a=UBERON:0000032;;UBERON:0004121;;UBERON:0004765
|is_a=UBERON:0000020;;UBERON:0004120;;UBERON:0004121;;UBERON:0004765;;UBERON:0010314
|synonym="otic capsule" EXACT [ZFA:0001500];;"otic capsule cartilage condensation" EXACT [EHDAA2:0001333];;"periotic capsule" RELATED [MA:0000252]
|synonym="auditory capsule" RELATED [VHOG:0000854];;"otic capsule" EXACT [ZFA:0001500];;"periotic" RELATED [];;"periotic capsule" RELATED [VHOG:0000854]
|comment=otic capsule goes to CS20 in EHDAA2, and until adult in ZFA
|comment=Taxon notes: developmental relationships need to be checked
|alt_id=
|alt_id=
|disjoint_from=
|disjoint_from=
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|obo_creation_date=
|obo_creation_date=
|subset=
|subset=
|adjacent_to=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|has_quality=
|has_quality=
|located_in=
|located_in=
|part_of=UBERON:0001694;;UBERON:0001703;;UBERON:0001846
|part_of=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl;;UBPROP:0000001 "Skeletal elements surrounding the membranous labyrinth of the inner ear. Sensory capsules anterolateral to and confluent with occipital arch.[AAO]" xsd:string;;UBPROP:0000002 "relationship loss: part_of occipito-petrosal (AAO:0010831)[AAO]" xsd:string;;UBPROP:0000002 "relationship loss: part_of otic and occipital (AAO:0000993)[AAO]" xsd:string
|is_obsolete=
|is_obsolete=
|preceded_by=
|preceded_by=
}}
}}

Revision as of 17:05, 26 June 2012

Name:otic capsule
Definition:"The capsule surrounding the inner ear mechanism; in elasmobranchs, it remains cartilaginous in the adult; in the embryos of higher vertebrates, it is cartilaginous at first but later becomes bony (at approximately 23 weeks in humans)[Biology-Online]. Bilaterally paired cartilage encasing the semicircular canals of the inner ear[ZFA]." http://www.biology-online.org/dictionary/Otic_capsule, ZFA:0001500
Xrefs:
links:

AAO:0010143
SCTID:361515007

VHOG:0000854
Synonyms: "auditory capsule" RELATED [VHOG:0000854]
"otic capsule" EXACT [ZFA:0001500]
"periotic" RELATED []
"periotic capsule" RELATED [VHOG:0000854]
Comments:Taxon notes: developmental relationships need to be checked

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0000020(sense organ),UBERON:0004120(mesoderm-derived structure),UBERON:0004121(ectoderm-derived structure),UBERON:0004765(skeletal element),UBERON:0010314(structure with developmental contribution from neural crest)



Children

part of:UBERON:0010113 (future membranous labyrinth)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology



Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0004637 (otic capsule), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
1.87e-86FFCP PHASE1:Mm9::chr17:31335953..31335957,-#_ef0848008da7a18a37873e78b0320066p3@Tmprss3
1.87e-86FFCP PHASE2:Mm9::chr1:172843813..172843834,-#_ef0848008da7a18a37873e78b0320066p@chr1:172843813..172843834, -
1.87e-86FFCP PHASE1:Mm9::chr1:182528371..182528385,+#_ef0848008da7a18a37873e78b0320066p@chr1:182528371..182528385, +
1.87e-86FFCP PHASE1:Mm9::chr10:107156949..107156956,-#_ef0848008da7a18a37873e78b0320066p3@Ptprq
1.87e-86FFCP PHASE2:Mm9::chr4:130461150..130461185,+#_ef0848008da7a18a37873e78b0320066p@chr4:130461150..130461185, +
1.87e-86FFCP PHASE1:Mm9::chr6:113251614..113251623,+#_ef0848008da7a18a37873e78b0320066p@chr6:113251614..113251623, +
1.87e-86FFCP PHASE1:Mm9::chr19:10536767..10536777,-#_ef0848008da7a18a37873e78b0320066p@chr19:10536767..10536777, -
1.87e-86FFCP PHASE1:Mm9::chr14:102297747..102297765,+#_ef0848008da7a18a37873e78b0320066p@chr14:102297747..102297765, +
1.87e-86FFCP PHASE2:Mm9::chr3:100724698..100724706,+#_ef0848008da7a18a37873e78b0320066p@chr3:100724698..100724706, +
1.87e-86FFCP PHASE2:Mm9::chr6:30619378..30619412,-#_ef0848008da7a18a37873e78b0320066p11@Tsga14
1.87e-86FFCP PHASE2:Mm9::chr19:10536797..10536802,-#_ef0848008da7a18a37873e78b0320066p@chr19:10536797..10536802, -
1.87e-86FFCP PHASE2:Mm9::chr9:56208792..56208814,-#_ef0848008da7a18a37873e78b0320066p@chr9:56208792..56208814, -
1.87e-86FFCP PHASE2:Mm9::chr9:42207887..42207960,-#_ef0848008da7a18a37873e78b0320066p1@Tecta
1.87e-86FFCP PHASE1:Mm9::chr19:55256373..55256384,+#_ef0848008da7a18a37873e78b0320066p@chr19:55256373..55256384, +
1.87e-86FFCP PHASE2:Mm9::chr11:102123535..102123544,+#_ef0848008da7a18a37873e78b0320066p5@BC030867
1.87e-86FFCP PHASE2:Mm9::chr3:35012425..35012439,+#_ef0848008da7a18a37873e78b0320066p@chr3:35012425..35012439, +
1.87e-86FFCP PHASE2:Mm9::chr4:115556989..115556997,+#_ef0848008da7a18a37873e78b0320066p1@Kncn
1.87e-86FFCP PHASE2:Mm9::chr17:13983160..13983167,+#_ef0848008da7a18a37873e78b0320066p@chr17:13983160..13983167, +
1.87e-86FFCP PHASE1:Mm9::chr9:42207887..42207960,-#_ef0848008da7a18a37873e78b0320066p1@Tecta
1.87e-86FFCP PHASE1:Mm9::chr1:93235253..93235264,+#_ef0848008da7a18a37873e78b0320066p@chr1:93235253..93235264, +
1.87e-86FFCP PHASE2:Mm9::chr9:42206745..42206774,-#_ef0848008da7a18a37873e78b0320066p@chr9:42206745..42206774, -
1.87e-86FFCP PHASE2:Mm9::chr19:55255206..55255223,+#_ef0848008da7a18a37873e78b0320066p1@Tectb
1.87e-86FFCP PHASE2:Mm9::chr3:106986057..106986062,+#_ef0848008da7a18a37873e78b0320066p1@Kcna10
1.87e-86FFCP PHASE1:Mm9::chr3:35012397..35012405,+#_ef0848008da7a18a37873e78b0320066p@chr3:35012397..35012405, +
1.87e-86FFCP PHASE1:Mm9::chr7:109052297..109052300,-#_ef0848008da7a18a37873e78b0320066p2@Tomt
1.87e-86FFCP PHASE1:Mm9::chr13:43699188..43699216,+#_ef0848008da7a18a37873e78b0320066p@chr13:43699188..43699216, +
1.87e-86FFCP PHASE2:Mm9::chr2:128881546..128881553,-#_ef0848008da7a18a37873e78b0320066p@chr2:128881546..128881553, -
1.87e-86FFCP PHASE1:Mm9::chr5:30710403..30710406,-#_ef0848008da7a18a37873e78b0320066p10@Otof
1.87e-86FFCP PHASE1:Mm9::chr13:78257491..78257498,+#_ef0848008da7a18a37873e78b0320066p@chr13:78257491..78257498, +
1.87e-86FFCP PHASE2:Mm9::chr4:151505798..151505818,-#_ef0848008da7a18a37873e78b0320066p21@Espn
1.87e-86FFCP PHASE1:Mm9::chr9:42206745..42206774,-#_ef0848008da7a18a37873e78b0320066p@chr9:42206745..42206774, -
1.87e-86FFCP PHASE1:Mm9::chr2:67011921..67011934,+#_ef0848008da7a18a37873e78b0320066p2@Gm1322
1.87e-86FFCP PHASE2:Mm9::chr1:93218694..93218705,+#_ef0848008da7a18a37873e78b0320066p1@Espnl
1.87e-86FFCP PHASE2:Mm9::chr18:42158627..42158630,-#_ef0848008da7a18a37873e78b0320066p@chr18:42158627..42158630, -
1.87e-86FFCP PHASE1:Mm9::chr9:66860888..66860899,+#_ef0848008da7a18a37873e78b0320066p@chr9:66860888..66860899, +
1.87e-86FFCP PHASE2:Mm9::chr13:78257491..78257498,+#_ef0848008da7a18a37873e78b0320066p@chr13:78257491..78257498, +
1.87e-86FFCP PHASE1:Mm9::chrX:154140800..154140810,+#_ef0848008da7a18a37873e78b0320066p@chrX:154140800..154140810, +
1.87e-86FFCP PHASE1:Mm9::chr3:81012915..81012923,+#_ef0848008da7a18a37873e78b0320066p@chr3:81012915..81012923, +
1.87e-86FFCP PHASE2:Mm9::chr2:152453066..152453075,-#_ef0848008da7a18a37873e78b0320066p@chr2:152453066..152453075, -
1.87e-86FFCP PHASE1:Mm9::chr10:107349392..107349413,-#_ef0848008da7a18a37873e78b0320066p2@Otogl
1.87e-86FFCP PHASE2:Mm9::chr12:13508046..13508055,+#_ef0848008da7a18a37873e78b0320066p@chr12:13508046..13508055, +
1.87e-86FFCP PHASE2:Mm9::chr5:150945209..150945220,+#_ef0848008da7a18a37873e78b0320066p@chr5:150945209..150945220, +
1.87e-86FFCP PHASE1:Mm9::chr10:80806020..80806031,-#_ef0848008da7a18a37873e78b0320066p3@Gipc3
1.87e-86FFCP PHASE2:Mm9::chr3:154693281..154693317,-#_ef0848008da7a18a37873e78b0320066p@chr3:154693281..154693317, -
1.87e-86FFCP PHASE2:Mm9::chr9:42208142..42208157,-#_ef0848008da7a18a37873e78b0320066p10@Tecta
1.87e-86FFCP PHASE1:Mm9::chr2:128881546..128881553,-#_ef0848008da7a18a37873e78b0320066p@chr2:128881546..128881553, -
1.87e-86FFCP PHASE1:Mm9::chr11:102123554..102123566,+#_ef0848008da7a18a37873e78b0320066p4@BC030867
1.87e-86FFCP PHASE1:Mm9::chr7:133957514..133957529,+#_ef0848008da7a18a37873e78b0320066p@chr7:133957514..133957529, +
1.87e-86FFCP PHASE1:Mm9::chr15:65641779..65641790,+#_ef0848008da7a18a37873e78b0320066p@chr15:65641779..65641790, +
1.87e-86FFCP PHASE2:Mm9::chr4:63079735..63079745,-#_ef0848008da7a18a37873e78b0320066p@chr4:63079735..63079745, -
1.87e-86FFCP PHASE2:Mm9::chr5:147854240..147854249,-#_ef0848008da7a18a37873e78b0320066p@chr5:147854240..147854249, -
1.87e-86FFCP PHASE2:Mm9::chr10:107349430..107349440,-#_ef0848008da7a18a37873e78b0320066p3@Otogl
1.87e-86FFCP PHASE1:Mm9::chr18:81314626..81314636,+#_ef0848008da7a18a37873e78b0320066p@chr18:81314626..81314636, +
1.87e-86FFCP PHASE1:Mm9::chr11:75421384..75421397,+#_ef0848008da7a18a37873e78b0320066p@chr11:75421384..75421397, +
1.87e-86FFCP PHASE2:Mm9::chr17:31335903..31335921,-#_ef0848008da7a18a37873e78b0320066p2@Tmprss3
1.87e-86FFCP PHASE2:Mm9::chr14:47293496..47293510,-#_ef0848008da7a18a37873e78b0320066p@chr14:47293496..47293510, -
1.87e-86FFCP PHASE1:Mm9::chr9:42208142..42208157,-#_ef0848008da7a18a37873e78b0320066p10@Tecta
1.87e-86FFCP PHASE2:Mm9::chr6:86746562..86746579,-#_ef0848008da7a18a37873e78b0320066p@chr6:86746562..86746579, -
1.87e-86FFCP PHASE2:Mm9::chr15:58480061..58480066,+#_ef0848008da7a18a37873e78b0320066p5@Fer1l6
1.87e-86FFCP PHASE2:Mm9::chr9:42207777..42207789,-#_ef0848008da7a18a37873e78b0320066p7@Tecta
1.87e-86FFCP PHASE1:Mm9::chr3:58626291..58626298,-#_ef0848008da7a18a37873e78b0320066p@chr3:58626291..58626298, -
1.87e-86FFCP PHASE2:Mm9::chr11:114603036..114603048,+#_ef0848008da7a18a37873e78b0320066p@chr11:114603036..114603048, +
1.87e-86FFCP PHASE2:Mm9::chr16:93971325..93971337,-#_ef0848008da7a18a37873e78b0320066p@chr16:93971325..93971337, -
1.87e-86FFCP PHASE1:Mm9::chr15:12848147..12848162,+#_ef0848008da7a18a37873e78b0320066p@chr15:12848147..12848162, +
1.87e-86FFCP PHASE1:Mm9::chr13:48087761..48087775,-#_ef0848008da7a18a37873e78b0320066p@chr13:48087761..48087775, -
1.87e-86FFCP PHASE2:Mm9::chr1:154246932..154246939,+#_ef0848008da7a18a37873e78b0320066p7@Glt25d2
1.87e-86FFCP PHASE1:Mm9::chr5:3909310..3909321,+#_ef0848008da7a18a37873e78b0320066p@chr5:3909310..3909321, +
1.87e-86FFCP PHASE1:Mm9::chr4:115556972..115556979,+#_ef0848008da7a18a37873e78b0320066p3@Kncn
1.87e-86FFCP PHASE1:Mm9::chr11:4689776..4689785,-#_ef0848008da7a18a37873e78b0320066p@chr11:4689776..4689785, -
1.87e-86FFCP PHASE2:Mm9::chr8:13414266..13414279,+#_ef0848008da7a18a37873e78b0320066p@chr8:13414266..13414279, +
1.87e-86FFCP PHASE2:Mm9::chr2:53464168..53464175,+#_ef0848008da7a18a37873e78b0320066p@chr2:53464168..53464175, +
1.87e-86FFCP PHASE2:Mm9::chr5:72652660..72652667,+#_ef0848008da7a18a37873e78b0320066p@chr5:72652660..72652667, +
1.87e-86FFCP PHASE2:Mm9::chr11:89702580..89702593,-#_ef0848008da7a18a37873e78b0320066p@chr11:89702580..89702593, -
1.87e-86FFCP PHASE1:Mm9::chr9:42207777..42207789,-#_ef0848008da7a18a37873e78b0320066p7@Tecta
1.87e-86FFCP PHASE2:Mm9::chr2:136942131..136942142,-#_ef0848008da7a18a37873e78b0320066p6@Jag1
1.87e-86FFCP PHASE1:Mm9::chr19:4140290..4140321,+#_ef0848008da7a18a37873e78b0320066p2@Gpr152
1.87e-86FFCP PHASE1:Mm9::chr17:13983198..13983203,+#_ef0848008da7a18a37873e78b0320066p@chr17:13983198..13983203, +
1.87e-86FFCP PHASE2:Mm9::chr11:75421384..75421397,+#_ef0848008da7a18a37873e78b0320066p@chr11:75421384..75421397, +
1.87e-86FFCP PHASE1:Mm9::chr1:43454162..43454170,-#_ef0848008da7a18a37873e78b0320066p@chr1:43454162..43454170, -
1.87e-86FFCP PHASE1:Mm9::chr10:108316802..108316807,-#_ef0848008da7a18a37873e78b0320066p@chr10:108316802..108316807, -
1.87e-86FFCP PHASE2:Mm9::chr8:13435173..13435186,+#_ef0848008da7a18a37873e78b0320066p6@Fam70b
1.87e-86FFCP PHASE2:Mm9::chr2:121206667..121206674,-#_ef0848008da7a18a37873e78b0320066p2@Strc
1.87e-86FFCP PHASE2:Mm9::chr10:81091447..81091464,+#_ef0848008da7a18a37873e78b0320066p9@Ankrd24
1.87e-86FFCP PHASE1:Mm9::chr16:96494788..96494801,+#_ef0848008da7a18a37873e78b0320066p12@B3galt5
1.87e-86FFCP PHASE2:Mm9::chr1:78523144..78523177,+#_ef0848008da7a18a37873e78b0320066p@chr1:78523144..78523177, +
1.87e-86FFCP PHASE2:Mm9::chr7:53496326..53496340,+#_ef0848008da7a18a37873e78b0320066p1@Otog
1.87e-86FFCP PHASE2:Mm9::chr5:3909310..3909321,+#_ef0848008da7a18a37873e78b0320066p@chr5:3909310..3909321, +
1.87e-86FFCP PHASE2:Mm9::chr14:31283072..31283081,-#_ef0848008da7a18a37873e78b0320066p@chr14:31283072..31283081, -
1.87e-86FFCP PHASE2:Mm9::chr1:172843847..172843880,-#_ef0848008da7a18a37873e78b0320066p@chr1:172843847..172843880, -
1.87e-86FFCP PHASE1:Mm9::chr1:182528388..182528403,+#_ef0848008da7a18a37873e78b0320066p@chr1:182528388..182528403, +
1.87e-86FFCP PHASE2:Mm9::chr19:4140290..4140321,+#_ef0848008da7a18a37873e78b0320066p2@Gpr152
1.87e-86FFCP PHASE1:Mm9::chr4:133802857..133802884,+#_ef0848008da7a18a37873e78b0320066p@chr4:133802857..133802884, +
1.87e-86FFCP PHASE1:Mm9::chr19:10536797..10536802,-#_ef0848008da7a18a37873e78b0320066p@chr19:10536797..10536802, -
1.87e-86FFCP PHASE1:Mm9::chr11:89702580..89702593,-#_ef0848008da7a18a37873e78b0320066p@chr11:89702580..89702593, -
1.87e-86FFCP PHASE2:Mm9::chr6:30619443..30619450,-#_ef0848008da7a18a37873e78b0320066p13@Tsga14
1.87e-86FFCP PHASE1:Mm9::chr3:100724698..100724706,+#_ef0848008da7a18a37873e78b0320066p@chr3:100724698..100724706, +
1.87e-86FFCP PHASE2:Mm9::chr2:67011921..67011934,+#_ef0848008da7a18a37873e78b0320066p2@Gm1322
1.87e-86FFCP PHASE2:Mm9::chr9:42207965..42207978,-#_ef0848008da7a18a37873e78b0320066p5@Tecta
1.87e-86FFCP PHASE1:Mm9::chr8:13435173..13435186,+#_ef0848008da7a18a37873e78b0320066p6@Fam70b
1.87e-86FFCP PHASE1:Mm9::chr10:97109753..97109764,+#_ef0848008da7a18a37873e78b0320066p3@Epyc










Property "Property value" (as page type) with input value "UBPROP:0000001 "Skeletal elements surrounding the membranous labyrinth of the inner ear. Sensory capsules anterolateral to and confluent with occipital arch.[AAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process., Property "Property value" (as page type) with input value "UBPROP:0000002 "relationship loss: part_of occipito-petrosal (AAO:0010831)[AAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process., Property "Property value" (as page type) with input value "UBPROP:0000002 "relationship loss: part_of otic and occipital (AAO:0000993)[AAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.

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