Personal tools

CL:0002127: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
Line 2: Line 2:
|id=CL:0002127
|id=CL:0002127
|name=innate effector T cell
|name=innate effector T cell
|namespace=efo
|namespace=cell;;efo
|def="A T cell with a receptor of limited diversity that is capable of immediate effector functions upon stimulation." [GOC:tfm, PMID:20581831]
|def="A T cell with a receptor of limited diversity that is capable of immediate effector functions upon stimulation." [GOC:tfm, PMID:20581831]
|xref=
|xref=
Line 14: Line 14:
|obo_creation_date=2010-08-20T02:14:25Z
|obo_creation_date=2010-08-20T02:14:25Z
|subset=
|subset=
|adjacent_to=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
Line 20: Line 19:
|located_in=
|located_in=
|part_of=
|part_of=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl.owl;;IAO:0000412 http://purl.obolibrary.org/obo/efo.obo.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl.owl;;IAO:0000412 http://purl.obolibrary.org/obo/efo.owl
|is_obsolete=
|is_obsolete=
|preceded_by=
|preceded_by=
}}
}}

Revision as of 17:26, 26 June 2012

Name:innate effector T cell
Namespace:cell;;efo
Definition:"A T cell with a receptor of limited diversity that is capable of immediate effector functions upon stimulation." [GOC:tfm, PMID:20581831]
Created by:tmeehan
Creation date:2010-08-20T02:14:25Z


Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:CL:0000911(effector T cell)



Children


is a:CL:0000814 (mature NK T cell)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)


FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.

Human (Homo sapiens)

Mouse (Mus musculus)


Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0002127 (innate effector T cell), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
5.42e-195FFCP PHASE1:Hg19::chr9:72117884..72117889,-#_04410cfb4aefb0cc57c5897b56fc156cp@chr9:72117884..72117889, -
5.42e-195FFCP PHASE2:Hg19::chr15:92006659..92006679,+#_04410cfb4aefb0cc57c5897b56fc156cp2@uc002bqw.2
5.42e-195FFCP PHASE1:Hg19::chr4:105805755..105805761,+#_04410cfb4aefb0cc57c5897b56fc156cp@chr4:105805755..105805761, +
5.42e-195FFCP PHASE1:Hg19::chr8:114877856..114877881,-#_04410cfb4aefb0cc57c5897b56fc156cp@chr8:114877856..114877881, -
5.42e-195FFCP PHASE2:Hg19::chr4:134707420..134707442,-#_04410cfb4aefb0cc57c5897b56fc156cp@chr4:134707420..134707442, -
5.42e-195FFCP PHASE1:Hg19::chr15:91989101..91989105,+#_04410cfb4aefb0cc57c5897b56fc156cp@chr15:91989101..91989105, +
5.42e-195FFCP PHASE1:Hg19::chr4:175842537..175842553,-#_04410cfb4aefb0cc57c5897b56fc156cp@chr4:175842537..175842553, -
5.42e-195FFCP PHASE2:Hg19::chr4:133657589..133657598,-#_04410cfb4aefb0cc57c5897b56fc156cp@chr4:133657589..133657598, -
5.42e-195FFCP PHASE1:Hg19::chr2:146998057..146998070,-#_04410cfb4aefb0cc57c5897b56fc156cp@chr2:146998057..146998070, -
5.42e-195FFCP PHASE2:Hg19::chr17:14101134..14101143,+#_04410cfb4aefb0cc57c5897b56fc156cp@chr17:14101134..14101143, +
5.42e-195FFCP PHASE2:Hg19::chr7:19479837..19479844,+#_04410cfb4aefb0cc57c5897b56fc156cp@chr7:19479837..19479844, +
5.42e-195FFCP PHASE2:Hg19::chr5:24272119..24272147,-#_04410cfb4aefb0cc57c5897b56fc156cp@chr5:24272119..24272147, -
5.42e-195FFCP PHASE1:Hg19::chr9:87797549..87797564,+#_04410cfb4aefb0cc57c5897b56fc156cp@chr9:87797549..87797564, +
5.42e-195FFCP PHASE1:Hg19::chr16:67022522..67022529,+#_04410cfb4aefb0cc57c5897b56fc156cp12@CES4A
5.42e-195FFCP PHASE1:Hg19::chr10:11846830..11846860,-#_04410cfb4aefb0cc57c5897b56fc156cp@chr10:11846830..11846860, -
5.42e-195FFCP PHASE2:Hg19::chr14:22962827..22962830,+#_04410cfb4aefb0cc57c5897b56fc156cp3@uc001weo.2
5.42e-195FFCP PHASE1:Hg19::chr22:46041912..46041915,+#_04410cfb4aefb0cc57c5897b56fc156cp@chr22:46041912..46041915, +
5.42e-195FFCP PHASE1:Hg19::chr1:237900222..237900230,+#_04410cfb4aefb0cc57c5897b56fc156cp@chr1:237900222..237900230, +
5.42e-195FFCP PHASE2:Hg19::chr4:175842470..175842486,-#_04410cfb4aefb0cc57c5897b56fc156cp@chr4:175842470..175842486, -
5.42e-195FFCP PHASE1:Hg19::chr13:49078833..49078841,-#_04410cfb4aefb0cc57c5897b56fc156cp@chr13:49078833..49078841, -
5.42e-195FFCP PHASE1:Hg19::chr3:152204326..152204345,+#_04410cfb4aefb0cc57c5897b56fc156cp@chr3:152204326..152204345, +
5.42e-195FFCP PHASE2:Hg19::chr16:67022368..67022374,-#_04410cfb4aefb0cc57c5897b56fc156cp@chr16:67022368..67022374, -
5.42e-195FFCP PHASE2:Hg19::chr2:146687090..146687095,+#_04410cfb4aefb0cc57c5897b56fc156cp@chr2:146687090..146687095, +
5.42e-195FFCP PHASE1:Hg19::chr1:189141918..189141929,+#_04410cfb4aefb0cc57c5897b56fc156cp@chr1:189141918..189141929, +
5.42e-195FFCP PHASE2:Hg19::chr4:111448516..111448521,+#_04410cfb4aefb0cc57c5897b56fc156cp@chr4:111448516..111448521, +
5.42e-195FFCP PHASE1:Hg19::chr2:202521027..202521058,-#_04410cfb4aefb0cc57c5897b56fc156cp@chr2:202521027..202521058, -
5.42e-195FFCP PHASE2:Hg19::chr15:92006720..92006726,+#_04410cfb4aefb0cc57c5897b56fc156cp1@uc002bqw.2
5.42e-195FFCP PHASE1:Hg19::chr8:16739475..16739490,-#_04410cfb4aefb0cc57c5897b56fc156cp@chr8:16739475..16739490, -
5.42e-195FFCP PHASE2:Hg19::chr4:176123823..176123829,+#_04410cfb4aefb0cc57c5897b56fc156cp@chr4:176123823..176123829, +
5.42e-195FFCP PHASE1:Hg19::chr21:47278815..47278834,+#_04410cfb4aefb0cc57c5897b56fc156cp6@PCBP3
5.42e-195FFCP PHASE2:Hg19::chr4:134707449..134707458,-#_04410cfb4aefb0cc57c5897b56fc156cp@chr4:134707449..134707458, -
5.42e-195FFCP PHASE1:Hg19::chr15:91989133..91989141,+#_04410cfb4aefb0cc57c5897b56fc156cp@chr15:91989133..91989141, +
5.42e-195FFCP PHASE1:Hg19::chr4:175858389..175858405,-#_04410cfb4aefb0cc57c5897b56fc156cp@chr4:175858389..175858405, -
5.42e-195FFCP PHASE2:Hg19::chr4:133657651..133657654,-#_04410cfb4aefb0cc57c5897b56fc156cp@chr4:133657651..133657654, -
5.42e-195FFCP PHASE1:Hg19::chrX:133321044..133321049,+#_04410cfb4aefb0cc57c5897b56fc156cp@chrX:133321044..133321049, +
5.42e-195FFCP PHASE1:Hg19::chr8:51970952..51970959,+#_04410cfb4aefb0cc57c5897b56fc156cp@chr8:51970952..51970959, +
5.42e-195FFCP PHASE2:Hg19::chr17:14103251..14103258,+#_04410cfb4aefb0cc57c5897b56fc156cp@chr17:14103251..14103258, +
5.42e-195FFCP PHASE2:Hg19::chr21:43982135..43982142,+#_04410cfb4aefb0cc57c5897b56fc156cp@chr21:43982135..43982142, +
5.42e-195FFCP PHASE1:Hg19::chr7:38287827..38287832,-#_04410cfb4aefb0cc57c5897b56fc156cp@chr7:38287827..38287832, -
5.42e-195FFCP PHASE1:Hg19::chr4:128884938..128884941,-#_04410cfb4aefb0cc57c5897b56fc156cp@chr4:128884938..128884941, -
5.42e-195FFCP PHASE1:Hg19::chr9:4544914..4544917,-#_04410cfb4aefb0cc57c5897b56fc156cp@chr9:4544914..4544917, -
5.42e-195FFCP PHASE2:Hg19::chr21:39490932..39490937,+#_04410cfb4aefb0cc57c5897b56fc156cp@chr21:39490932..39490937, +
5.42e-195FFCP PHASE2:Hg19::chr4:175842511..175842520,-#_04410cfb4aefb0cc57c5897b56fc156cp@chr4:175842511..175842520, -
5.42e-195FFCP PHASE2:Hg19::chr2:146998057..146998070,-#_04410cfb4aefb0cc57c5897b56fc156cp@chr2:146998057..146998070, -
5.42e-195FFCP PHASE1:Hg19::chr8:50081052..50081075,-#_04410cfb4aefb0cc57c5897b56fc156cp@chr8:50081052..50081075, -
5.42e-195FFCP PHASE2:Hg19::chr1:200990231..200990238,-#_04410cfb4aefb0cc57c5897b56fc156cp@chr1:200990231..200990238, -
5.42e-195FFCP PHASE2:Hg19::chr7:117926347..117926353,-#_04410cfb4aefb0cc57c5897b56fc156cp@chr7:117926347..117926353, -
5.42e-195FFCP PHASE1:Hg19::chr6:128263833..128263838,-#_04410cfb4aefb0cc57c5897b56fc156cp@chr6:128263833..128263838, -
5.42e-195FFCP PHASE2:Hg19::chr9:116857558..116857566,-#_04410cfb4aefb0cc57c5897b56fc156cp@chr9:116857558..116857566, -
5.42e-195FFCP PHASE2:Hg19::chr15:69972162..69972169,+#_04410cfb4aefb0cc57c5897b56fc156cp@chr15:69972162..69972169, +
5.42e-195FFCP PHASE2:Hg19::chr4:134707474..134707504,-#_04410cfb4aefb0cc57c5897b56fc156cp@chr4:134707474..134707504, -
5.42e-195FFCP PHASE1:Hg19::chr3:192598433..192598481,-#_04410cfb4aefb0cc57c5897b56fc156cp@chr3:192598433..192598481, -
5.42e-195FFCP PHASE2:Hg19::chr22:46041912..46041915,+#_04410cfb4aefb0cc57c5897b56fc156cp@chr22:46041912..46041915, +
5.42e-195FFCP PHASE1:Hg19::chr8:75251775..75251785,+#_04410cfb4aefb0cc57c5897b56fc156cp@chr8:75251775..75251785, +
5.42e-195FFCP PHASE1:Hg19::chr15:92006659..92006679,+#_04410cfb4aefb0cc57c5897b56fc156cp2@uc002bqw.2
5.42e-195FFCP PHASE2:Hg19::chr9:72117884..72117889,-#_04410cfb4aefb0cc57c5897b56fc156cp@chr9:72117884..72117889, -
5.42e-195FFCP PHASE1:Hg19::chr13:24623546..24623587,-#_04410cfb4aefb0cc57c5897b56fc156cp@chr13:24623546..24623587, -
5.42e-195FFCP PHASE1:Hg19::chr4:134707420..134707442,-#_04410cfb4aefb0cc57c5897b56fc156cp@chr4:134707420..134707442, -
5.42e-195FFCP PHASE2:Hg19::chr4:105805755..105805761,+#_04410cfb4aefb0cc57c5897b56fc156cp@chr4:105805755..105805761, +
5.42e-195FFCP PHASE2:Hg19::chr8:114877856..114877881,-#_04410cfb4aefb0cc57c5897b56fc156cp@chr8:114877856..114877881, -
5.42e-195FFCP PHASE1:Hg19::chr4:133657589..133657598,-#_04410cfb4aefb0cc57c5897b56fc156cp@chr4:133657589..133657598, -
5.42e-195FFCP PHASE2:Hg19::chr15:91989101..91989105,+#_04410cfb4aefb0cc57c5897b56fc156cp@chr15:91989101..91989105, +
5.42e-195FFCP PHASE2:Hg19::chr4:175842537..175842553,-#_04410cfb4aefb0cc57c5897b56fc156cp@chr4:175842537..175842553, -
5.42e-195FFCP PHASE2:Hg19::chr8:16739475..16739490,-#_04410cfb4aefb0cc57c5897b56fc156cp@chr8:16739475..16739490, -
5.42e-195FFCP PHASE2:Hg19::chr13:49078833..49078841,-#_04410cfb4aefb0cc57c5897b56fc156cp@chr13:49078833..49078841, -
5.42e-195FFCP PHASE1:Hg19::chr17:14101134..14101143,+#_04410cfb4aefb0cc57c5897b56fc156cp@chr17:14101134..14101143, +
5.42e-195FFCP PHASE2:Hg19::chr9:87797549..87797564,+#_04410cfb4aefb0cc57c5897b56fc156cp@chr9:87797549..87797564, +
5.42e-195FFCP PHASE2:Hg19::chr16:67022522..67022529,+#_04410cfb4aefb0cc57c5897b56fc156cp12@CES4A
5.42e-195FFCP PHASE1:Hg19::chr8:67519931..67519935,-#_04410cfb4aefb0cc57c5897b56fc156cp@chr8:67519931..67519935, -
5.42e-195FFCP PHASE1:Hg19::chr7:19479837..19479844,+#_04410cfb4aefb0cc57c5897b56fc156cp@chr7:19479837..19479844, +
5.42e-195FFCP PHASE1:Hg19::chr2:162762231..162762234,+#_04410cfb4aefb0cc57c5897b56fc156cp@chr2:162762231..162762234, +
5.42e-195FFCP PHASE2:Hg19::chr8:51970952..51970959,+#_04410cfb4aefb0cc57c5897b56fc156cp@chr8:51970952..51970959, +
5.42e-195FFCP PHASE1:Hg19::chr4:175842470..175842486,-#_04410cfb4aefb0cc57c5897b56fc156cp@chr4:175842470..175842486, -
5.42e-195FFCP PHASE1:Hg19::chr4:2428062..2428080,+#_04410cfb4aefb0cc57c5897b56fc156cp1@uc003gfa.1
5.42e-195FFCP PHASE1:Hg19::chr2:141989111..141989114,-#_04410cfb4aefb0cc57c5897b56fc156cp@chr2:141989111..141989114, -
5.42e-195FFCP PHASE2:Hg19::chr1:237900222..237900230,+#_04410cfb4aefb0cc57c5897b56fc156cp@chr1:237900222..237900230, +
5.42e-195FFCP PHASE2:Hg19::chr3:152204326..152204345,+#_04410cfb4aefb0cc57c5897b56fc156cp@chr3:152204326..152204345, +
5.42e-195FFCP PHASE1:Hg19::chr16:67022368..67022374,-#_04410cfb4aefb0cc57c5897b56fc156cp@chr16:67022368..67022374, -
5.42e-195FFCP PHASE1:Hg19::chr4:111448516..111448521,+#_04410cfb4aefb0cc57c5897b56fc156cp@chr4:111448516..111448521, +
5.42e-195FFCP PHASE2:Hg19::chr1:189141918..189141929,+#_04410cfb4aefb0cc57c5897b56fc156cp@chr1:189141918..189141929, +
5.42e-195FFCP PHASE1:Hg19::chr15:92006720..92006726,+#_04410cfb4aefb0cc57c5897b56fc156cp1@uc002bqw.2
5.42e-195FFCP PHASE2:Hg19::chr2:202521027..202521058,-#_04410cfb4aefb0cc57c5897b56fc156cp@chr2:202521027..202521058, -
5.42e-195FFCP PHASE1:Hg19::chr4:176123823..176123829,+#_04410cfb4aefb0cc57c5897b56fc156cp@chr4:176123823..176123829, +
5.42e-195FFCP PHASE2:Hg19::chr8:50081052..50081075,-#_04410cfb4aefb0cc57c5897b56fc156cp@chr8:50081052..50081075, -
5.42e-195FFCP PHASE1:Hg19::chr4:134707449..134707458,-#_04410cfb4aefb0cc57c5897b56fc156cp@chr4:134707449..134707458, -
5.42e-195FFCP PHASE2:Hg19::chr21:47278815..47278834,+#_04410cfb4aefb0cc57c5897b56fc156cp6@PCBP3
5.42e-195FFCP PHASE1:Hg19::chr5:24272119..24272147,-#_04410cfb4aefb0cc57c5897b56fc156cp@chr5:24272119..24272147, -
5.42e-195FFCP PHASE1:Hg19::chr4:133657651..133657654,-#_04410cfb4aefb0cc57c5897b56fc156cp@chr4:133657651..133657654, -
5.42e-195FFCP PHASE2:Hg19::chr15:91989133..91989141,+#_04410cfb4aefb0cc57c5897b56fc156cp@chr15:91989133..91989141, +
5.42e-195FFCP PHASE1:Hg19::chr14:22962827..22962830,+#_04410cfb4aefb0cc57c5897b56fc156cp3@uc001weo.2
5.42e-195FFCP PHASE2:Hg19::chr4:175858389..175858405,-#_04410cfb4aefb0cc57c5897b56fc156cp@chr4:175858389..175858405, -
5.42e-195FFCP PHASE2:Hg19::chrX:133321044..133321049,+#_04410cfb4aefb0cc57c5897b56fc156cp@chrX:133321044..133321049, +
5.42e-195FFCP PHASE2:Hg19::chr10:11846830..11846860,-#_04410cfb4aefb0cc57c5897b56fc156cp@chr10:11846830..11846860, -
5.42e-195FFCP PHASE1:Hg19::chr21:43982135..43982142,+#_04410cfb4aefb0cc57c5897b56fc156cp@chr21:43982135..43982142, +
5.42e-195FFCP PHASE1:Hg19::chr17:14103251..14103258,+#_04410cfb4aefb0cc57c5897b56fc156cp@chr17:14103251..14103258, +
5.42e-195FFCP PHASE1:Hg19::chr21:39490932..39490937,+#_04410cfb4aefb0cc57c5897b56fc156cp@chr21:39490932..39490937, +
5.42e-195FFCP PHASE2:Hg19::chr7:38287827..38287832,-#_04410cfb4aefb0cc57c5897b56fc156cp@chr7:38287827..38287832, -
5.42e-195FFCP PHASE1:Hg19::chr4:175842511..175842520,-#_04410cfb4aefb0cc57c5897b56fc156cp@chr4:175842511..175842520, -
5.42e-195FFCP PHASE2:Hg19::chr4:128884938..128884941,-#_04410cfb4aefb0cc57c5897b56fc156cp@chr4:128884938..128884941, -
5.42e-195FFCP PHASE2:Hg19::chr9:4544914..4544917,-#_04410cfb4aefb0cc57c5897b56fc156cp@chr9:4544914..4544917, -

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=CL:0002127&oldid=1836743"