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{{DOID
{{DOID
|id=DOID:0060083
|alt_id=
|name=immune system cancer
|namespace=disease_ontology
|def="An organ system cancer located_in the immune system that is characterized by uncontrolled cellular proliferation in organs of the immune system." [url:http://en.wikipedia.org/wiki/Immune_system]
|xref=
|is_a=DOID:0050686
|synonym=
|comment=
|comment=
|alt_id=
|disjoint_from=
|union_of=
|created_by=lschriml
|created_by=lschriml
|obo_creation_date=2011-06-08T01:11:18Z
|def="An organ system cancer located_in the immune system that is characterized by uncontrolled cellular proliferation in organs of the immune system." [url:http://en.wikipedia.org/wiki/Immune_system]
|subset=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=DOID:0060083
|is_a=DOID:0050686
|is_obsolete=
|located_in=
|located_in=
|name=immune system cancer
|namespace=disease_ontology
|obo_creation_date=2011-06-08T01:11:18Z
|part_of=
|part_of=
|preceded_by=
|property_value=IAO:0000412 file:/Users/cjm/Dropbox/fantom5/HumanDO.obo
|property_value=IAO:0000412 file:/Users/cjm/Dropbox/fantom5/HumanDO.obo
|is_obsolete=
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}}
}}

Revision as of 10:32, 12 September 2014

Name:immune system cancer
Namespace:disease_ontology
Definition:"An organ system cancer located_in the immune system that is characterized by uncontrolled cellular proliferation in organs of the immune system." [url:http://en.wikipedia.org/wiki/Immune_system]
Created by:lschriml
Creation date:2011-06-08T01:11:18Z

Ontology association<br>Each term has an is_a parent in the Disease Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to DISEASE ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:DOID:0050686(organ system cancer)



Children


is a:DOID:0060073 (lymphatic system cancer),DOID:2531 (hematologic cancer),DOID:3277 (thymus cancer)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples

Human (Homo sapiens)

  • 10399-106A3 (acute myeloid leukemia (FAB M5) cell line:THP-1 (fresh))
  • 10400-106A4 (acute myeloid leukemia (FAB M5) cell line:THP-1 (revived))
  • 10405-106A9 (acute myeloid leukemia (FAB M5) cell line:THP-1 (thawed))
  • 10409-106B4 (chronic myelogenous leukemia cell line:KU812)
  • 10416-106C2 (chronic lymphocytic leukemia (T-CLL) cell line:SKW-3)
  • 10421-106C7 (adult T-cell leukemia cell line:ATN-1)
  • 10422-106C8 (Burkitt's lymphoma cell line:DAUDI)
  • 10424-106D1 (splenic lymphoma with villous lymphocytes cell line:SLVL)
  • 10429-106D6 (acute lymphoblastic leukemia (T-ALL) cell line:HPB-ALL)
  • 10435-106E3 (Hodgkin's lymphoma cell line:HD-Mar2)

... further results Mouse (Mus musculus)

  • 10399-106A3 (acute myeloid leukemia (FAB M5) cell line:THP-1 (fresh))
  • 10400-106A4 (acute myeloid leukemia (FAB M5) cell line:THP-1 (revived))
  • 10405-106A9 (acute myeloid leukemia (FAB M5) cell line:THP-1 (thawed))
  • 10409-106B4 (chronic myelogenous leukemia cell line:KU812)
  • 10416-106C2 (chronic lymphocytic leukemia (T-CLL) cell line:SKW-3)
  • 10421-106C7 (adult T-cell leukemia cell line:ATN-1)
  • 10422-106C8 (Burkitt's lymphoma cell line:DAUDI)
  • 10424-106D1 (splenic lymphoma with villous lymphocytes cell line:SLVL)
  • 10429-106D6 (acute lymphoblastic leukemia (T-ALL) cell line:HPB-ALL)
  • 10435-106E3 (Hodgkin's lymphoma cell line:HD-Mar2)

... further results

Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with DOID:0060083 (immune system cancer), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
7.91e-91FFCP PHASE1:Hg19::chr6:135513595..135513617,+#_8f10670ac988d6ef29d867325399a2aep4@MYB
7.91e-91FFCP PHASE2:Hg19::chr6:135513595..135513617,+#_8f10670ac988d6ef29d867325399a2aep4@MYB
1.58e-86FFCP PHASE1:Mm9::chr11:102331415..102331424,-#_e2754ef2e8f3886af436c2b7adfcb758p9@Itga2b
1.58e-86FFCP PHASE1:Mm9::chr10:76688454..76688462,+#_e2754ef2e8f3886af436c2b7adfcb758p@chr10:76688454..76688462, +
1.58e-86FFCP PHASE1:Mm9::chr10:76688464..76688474,+#_e2754ef2e8f3886af436c2b7adfcb758p@chr10:76688464..76688474, +
1.58e-86FFCP PHASE2:Mm9::chr10:76688454..76688462,+#_e2754ef2e8f3886af436c2b7adfcb758p@chr10:76688454..76688462, +
1.58e-86FFCP PHASE2:Mm9::chr11:102331415..102331424,-#_e2754ef2e8f3886af436c2b7adfcb758p9@Itga2b
1.58e-86FFCP PHASE2:Mm9::chr10:76688464..76688474,+#_e2754ef2e8f3886af436c2b7adfcb758p@chr10:76688464..76688474, +
3.61e-86FFCP PHASE2:Hg19::chr12:58329793..58329806,-#_878ceca7dd66ff54d0864ce1b149639bp2@ENST00000547492
3.61e-86FFCP PHASE1:Hg19::chr12:58329793..58329806,-#_878ceca7dd66ff54d0864ce1b149639bp2@ENST00000547492
1.2e-85FFCP PHASE1:Hg19::chr12:58329776..58329791,-#_4a6306d342e141161e0b197e975b8b1cp3@ENST00000547492
1.2e-85FFCP PHASE2:Hg19::chr12:58329776..58329791,-#_4a6306d342e141161e0b197e975b8b1cp3@ENST00000547492
4.4e-85FFCP PHASE2:Hg19::chr6:135533394..135533403,+#_aedc5bddcdaaec11980470e128d571e6p@chr6:135533394..135533403, +
4.4e-85FFCP PHASE1:Hg19::chr6:135533394..135533403,+#_aedc5bddcdaaec11980470e128d571e6p@chr6:135533394..135533403, +
2.22e-77FFCP PHASE2:Hg19::chr6:135502472..135502489,+#_62847dc14770d193c09c8c49ce609615p3@MYB
2.22e-77FFCP PHASE1:Hg19::chr6:135502472..135502489,+#_62847dc14770d193c09c8c49ce609615p3@MYB
9.4e-76FFCP PHASE2:Hg19::chr6:68598272..68598298,-#_e10003041e2cc9829a0dbacfd663248dp@chr6:68598272..68598298, -
9.4e-76FFCP PHASE1:Hg19::chr6:68598272..68598298,-#_e10003041e2cc9829a0dbacfd663248dp@chr6:68598272..68598298, -
2.03e-75FFCP PHASE2:Hg19::chr16:29674970..29675007,+#_b0f56f5270ce0189457598458b528dfep4@SPN
2.03e-75FFCP PHASE1:Hg19::chr16:29674970..29675007,+#_b0f56f5270ce0189457598458b528dfep4@SPN
7.69e-75FFCP PHASE1:Hg19::chr12:58329762..58329773,-#_5b0ee309d3cdefb201a6b10a9d042616p5@ENST00000547492
7.69e-75FFCP PHASE2:Hg19::chr12:58329762..58329773,-#_5b0ee309d3cdefb201a6b10a9d042616p5@ENST00000547492
1.51e-73FFCP PHASE1:Hg19::chr1:202129105..202129140,-#_a0fd96c40b86ef0839ae8a0856e5c582p2@PTPN7
1.51e-73FFCP PHASE2:Hg19::chr1:202129105..202129140,-#_a0fd96c40b86ef0839ae8a0856e5c582p2@PTPN7
1.25e-71FFCP PHASE2:Hg19::chr6:68592986..68593000,-#_4ad8566b4a59236aee092a3eb934c1e6p@chr6:68592986..68593000, -
1.25e-71FFCP PHASE1:Hg19::chr6:68592986..68593000,-#_4ad8566b4a59236aee092a3eb934c1e6p@chr6:68592986..68593000, -
1.49e-71FFCP PHASE2:Hg19::chr6:68598314..68598325,-#_49b1978d704e446887519eb02e91b955p@chr6:68598314..68598325, -
1.49e-71FFCP PHASE1:Hg19::chr6:68598314..68598325,-#_49b1978d704e446887519eb02e91b955p@chr6:68598314..68598325, -
7.94e-68FFCP PHASE2:Hg19::chr6:68596384..68596400,-#_a99f26b37bf2a9ce26c96e5f0c948b1fp@chr6:68596384..68596400, -
7.94e-68FFCP PHASE1:Hg19::chr6:68593536..68593560,-#_a99f26b37bf2a9ce26c96e5f0c948b1fp@chr6:68593536..68593560, -
7.94e-68FFCP PHASE1:Hg19::chr6:68596384..68596400,-#_a99f26b37bf2a9ce26c96e5f0c948b1fp@chr6:68596384..68596400, -
7.94e-68FFCP PHASE2:Hg19::chr6:68591611..68591627,-#_a99f26b37bf2a9ce26c96e5f0c948b1fp@chr6:68591611..68591627, -
7.94e-68FFCP PHASE1:Hg19::chr6:68591611..68591627,-#_a99f26b37bf2a9ce26c96e5f0c948b1fp@chr6:68591611..68591627, -
7.94e-68FFCP PHASE2:Hg19::chr6:68593536..68593560,-#_a99f26b37bf2a9ce26c96e5f0c948b1fp@chr6:68593536..68593560, -
3.59e-67FFCP PHASE1:Hg19::chr16:29675010..29675041,+#_69baa20ad18c38d0e7e0211eb71f2ee3p5@SPN
3.59e-67FFCP PHASE2:Hg19::chr16:29675010..29675041,+#_69baa20ad18c38d0e7e0211eb71f2ee3p5@SPN
1.24e-65FFCP PHASE2:Hg19::chr6:135516978..135516993,+#_8a8057a5ec90cd04b8013d1494caa3f8p7@MYB
1.24e-65FFCP PHASE1:Hg19::chr6:135516978..135516993,+#_8a8057a5ec90cd04b8013d1494caa3f8p7@MYB
1.33e-65FFCP PHASE1:Mm9::chr2:156853485..156853494,-#_4732c5c97859fece38e24a3c313d1851p13@9830001H06Rik
1.33e-65FFCP PHASE2:Mm9::chr19:8798483..8798487,+#_4732c5c97859fece38e24a3c313d1851p1@ENSMUST00000082787
1.33e-65FFCP PHASE1:Mm9::chrX:160480258..160480272,-#_4732c5c97859fece38e24a3c313d1851p@chrX:160480258..160480272, -
1.33e-65FFCP PHASE2:Mm9::chr2:156853485..156853494,-#_4732c5c97859fece38e24a3c313d1851p13@9830001H06Rik
1.33e-65FFCP PHASE1:Mm9::chr19:8798483..8798487,+#_4732c5c97859fece38e24a3c313d1851p1@ENSMUST00000082787
1.33e-65FFCP PHASE2:Mm9::chrX:160480258..160480272,-#_4732c5c97859fece38e24a3c313d1851p@chrX:160480258..160480272, -
1.56e-64FFCP PHASE2:Hg19::chr6:68598245..68598268,-#_2d35d613ca5fb03de44169b1eb97b08fp@chr6:68598245..68598268, -
1.56e-64FFCP PHASE1:Hg19::chr6:68598245..68598268,-#_2d35d613ca5fb03de44169b1eb97b08fp@chr6:68598245..68598268, -
3.76e-64FFCP PHASE2:Hg19::chr6:68598507..68598519,-#_91d0d97c39ab9aadd8d1eb33c9106421p@chr6:68598507..68598519, -
3.76e-64FFCP PHASE1:Hg19::chr6:68598507..68598519,-#_91d0d97c39ab9aadd8d1eb33c9106421p@chr6:68598507..68598519, -
4.16e-64FFCP PHASE1:Hg19::chr6:68595369..68595417,-#_6e60caab67b06f57effb1413ca0caeb1p@chr6:68595369..68595417, -
4.16e-64FFCP PHASE2:Hg19::chr6:68598587..68598598,-#_6e60caab67b06f57effb1413ca0caeb1p@chr6:68598587..68598598, -
4.16e-64FFCP PHASE2:Hg19::chr6:68595369..68595417,-#_6e60caab67b06f57effb1413ca0caeb1p@chr6:68595369..68595417, -
4.16e-64FFCP PHASE1:Hg19::chr6:68598587..68598598,-#_6e60caab67b06f57effb1413ca0caeb1p@chr6:68598587..68598598, -
2.54e-62FFCP PHASE2:Hg19::chr11:17297848..17297868,+#_be6d064b43afa2724b6742aec54f70d0p9@NUCB2
2.54e-62FFCP PHASE1:Hg19::chr11:17297848..17297868,+#_be6d064b43afa2724b6742aec54f70d0p9@NUCB2
1.55e-60FFCP PHASE1:Hg19::chr6:135526382..135526388,+#_08f71d8f08ad994c8566733fec1ca1d6p@chr6:135526382..135526388, +
1.55e-60FFCP PHASE2:Hg19::chr6:135526382..135526388,+#_08f71d8f08ad994c8566733fec1ca1d6p@chr6:135526382..135526388, +
2.15e-60FFCP PHASE2:Hg19::chr6:68596826..68596859,-#_c14c2f74557db23e7e3fec2d2bcdc7fbp@chr6:68596826..68596859, -
2.15e-60FFCP PHASE2:Hg19::chr6:68592948..68592958,-#_c14c2f74557db23e7e3fec2d2bcdc7fbp@chr6:68592948..68592958, -
2.15e-60FFCP PHASE1:Hg19::chr6:68596826..68596859,-#_c14c2f74557db23e7e3fec2d2bcdc7fbp@chr6:68596826..68596859, -
2.15e-60FFCP PHASE1:Hg19::chr6:68592948..68592958,-#_c14c2f74557db23e7e3fec2d2bcdc7fbp@chr6:68592948..68592958, -
2.15e-60FFCP PHASE2:Hg19::chr6:68597599..68597612,-#_c14c2f74557db23e7e3fec2d2bcdc7fbp@chr6:68597599..68597612, -
2.15e-60FFCP PHASE2:Hg19::chr6:68596698..68596715,-#_c14c2f74557db23e7e3fec2d2bcdc7fbp@chr6:68596698..68596715, -
2.15e-60FFCP PHASE1:Hg19::chr6:68597599..68597612,-#_c14c2f74557db23e7e3fec2d2bcdc7fbp@chr6:68597599..68597612, -
2.15e-60FFCP PHASE1:Hg19::chr6:68596698..68596715,-#_c14c2f74557db23e7e3fec2d2bcdc7fbp@chr6:68596698..68596715, -
2.15e-60FFCP PHASE2:Hg19::chr6:68598534..68598555,-#_c14c2f74557db23e7e3fec2d2bcdc7fbp@chr6:68598534..68598555, -
2.15e-60FFCP PHASE1:Hg19::chr6:68598534..68598555,-#_c14c2f74557db23e7e3fec2d2bcdc7fbp@chr6:68598534..68598555, -
2.4e-60FFCP PHASE1:Hg19::chr19:695494..695510,-#_968b5b05e3c9d00256f4955b8cf17f66p3@PRSS57
2.4e-60FFCP PHASE2:Hg19::chr19:695494..695510,-#_968b5b05e3c9d00256f4955b8cf17f66p3@PRSS57
5.98e-60FFCP PHASE2:Hg19::chr6:68599042..68599067,-#_7def26bcb2e0e0a174e547118601aa3dp1@uc003pes.1, p1@uc003pet.1
5.98e-60FFCP PHASE1:Hg19::chr6:68599042..68599067,-#_7def26bcb2e0e0a174e547118601aa3dp1@uc003pes.1, p1@uc003pet.1
1.21e-59FFCP PHASE1:Hg19::chr11:33913475..33913549,-#_4db4aaf25ece4e9d69e79d074d648290p5@LMO2
1.21e-59FFCP PHASE2:Hg19::chr11:33913475..33913549,-#_4db4aaf25ece4e9d69e79d074d648290p5@LMO2
1.58e-59FFCP PHASE1:Hg19::chr6:135501708..135501716,+#_460661bbfc8b5ffb22217363a99f6b9ep@chr6:135501708..135501716, +
1.58e-59FFCP PHASE2:Hg19::chr6:135501708..135501716,+#_460661bbfc8b5ffb22217363a99f6b9ep@chr6:135501708..135501716, +
1.6e-59FFCP PHASE2:Hg19::chrX:65146038..65146063,-#_c4d0313fd68045e1be1362249306219bp@chrX:65146038..65146063, -
1.6e-59FFCP PHASE1:Hg19::chrX:65146038..65146063,-#_c4d0313fd68045e1be1362249306219bp@chrX:65146038..65146063, -
2.35e-59FFCP PHASE2:Hg19::chr8:130560794..130560810,-#_b921ba765d93479c7f60866666726400p@chr8:130560794..130560810, -
2.35e-59FFCP PHASE1:Hg19::chr8:130560794..130560810,-#_b921ba765d93479c7f60866666726400p@chr8:130560794..130560810, -
2.1e-58FFCP PHASE1:Hg19::chr8:130560752..130560768,-#_1ce77e3adf0a79240e1e0336f40facb0p@chr8:130560752..130560768, -
2.1e-58FFCP PHASE2:Hg19::chr8:130560752..130560768,-#_1ce77e3adf0a79240e1e0336f40facb0p@chr8:130560752..130560768, -
3.28e-58FFCP PHASE1:Mm9::chr11:104171122..104171127,+#_ba2a6fce03bf5ec211d554e0f39d07b8p@chr11:104171122..104171127, +
3.28e-58FFCP PHASE2:Mm9::chr11:104171122..104171127,+#_ba2a6fce03bf5ec211d554e0f39d07b8p@chr11:104171122..104171127, +
9.68e-58FFCP PHASE2:Hg19::chr6:68598984..68598997,-#_282d0c54c967ad9fceae942a644b61e2p2@uc003pes.1, p2@uc003pet.1
9.68e-58FFCP PHASE1:Hg19::chr6:68598984..68598997,-#_282d0c54c967ad9fceae942a644b61e2p2@uc003pes.1, p2@uc003pet.1
9.63e-57FFCP PHASE2:Hg19::chr6:68593520..68593534,-#_ed29ee8ed18330bf1f2f86145c285907p@chr6:68593520..68593534, -
9.63e-57FFCP PHASE1:Hg19::chr6:68593520..68593534,-#_ed29ee8ed18330bf1f2f86145c285907p@chr6:68593520..68593534, -
1.09e-56FFCP PHASE1:Hg19::chr6:68596783..68596797,-#_0a89de59e341b45738d7b86a549e230cp@chr6:68596783..68596797, -
1.09e-56FFCP PHASE2:Hg19::chr6:68596343..68596355,-#_0a89de59e341b45738d7b86a549e230cp@chr6:68596343..68596355, -
1.09e-56FFCP PHASE2:Hg19::chr6:68596783..68596797,-#_0a89de59e341b45738d7b86a549e230cp@chr6:68596783..68596797, -
1.09e-56FFCP PHASE1:Hg19::chr6:68596343..68596355,-#_0a89de59e341b45738d7b86a549e230cp@chr6:68596343..68596355, -
4.1e-55FFCP PHASE2:Hg19::chr6:68593206..68593218,-#_5496867e71e2f560207a32edaccf55e7p@chr6:68593206..68593218, -
4.1e-55FFCP PHASE1:Hg19::chr6:68593206..68593218,-#_5496867e71e2f560207a32edaccf55e7p@chr6:68593206..68593218, -
1.62e-54FFCP PHASE2:Hg19::chr12:58329689..58329704,-#_46a5dd8a51a08402a16d77fbbd1d1424p4@ENST00000547492
1.62e-54FFCP PHASE1:Hg19::chr12:58329689..58329704,-#_46a5dd8a51a08402a16d77fbbd1d1424p4@ENST00000547492
2.35e-54FFCP PHASE2:Hg19::chr3:53231298..53231310,+#_f95e97b38a623becacbe7f663a6f0c7cp@chr3:53231298..53231310, +
2.35e-54FFCP PHASE1:Hg19::chr3:53231298..53231310,+#_f95e97b38a623becacbe7f663a6f0c7cp@chr3:53231298..53231310, +
3.68e-54FFCP PHASE2:Hg19::chr3:18020982..18021001,+#_6a4fcefe0e7f6d91ea00d74b2d2b2326p@chr3:18020982..18021001, +
3.68e-54FFCP PHASE1:Hg19::chr3:18020982..18021001,+#_6a4fcefe0e7f6d91ea00d74b2d2b2326p@chr3:18020982..18021001, +
1.18e-53FFCP PHASE1:Hg19::chr11:17297872..17297908,+#_a9793e2c741e24017b85282775525990p7@NUCB2
1.18e-53FFCP PHASE2:Hg19::chr11:17297872..17297908,+#_a9793e2c741e24017b85282775525990p7@NUCB2

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