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{{DOID
{{DOID
|id=DOID:305
|alt_id=DOID:2428;;DOID:6570
|name=carcinoma
|namespace=disease_ontology
|def="A cell type cancer that has_material_basis_in abnormally proliferating cells derived_from epithelial cells." [url:http://en.wikipedia.org/wiki/Carcinoma]
|xref=MSH:D002277;;NCI:C2916;;SNOMEDCT_2010_1_31:118285006;;SNOMEDCT_2010_1_31:134207000;;SNOMEDCT_2010_1_31:154433003;;SNOMEDCT_2010_1_31:188083002;;SNOMEDCT_2010_1_31:189546004;;SNOMEDCT_2010_1_31:189549006;;SNOMEDCT_2010_1_31:189559007;;SNOMEDCT_2010_1_31:269513004;;SNOMEDCT_2010_1_31:68453008;;SNOMEDCT_2010_1_31:71298006;;UMLS_CUI:C0007097;;UMLS_CUI:C0553707;;UMLS_CUI:C1368683
|is_a=DOID:0050687
|synonym="carcinoma" EXACT [CSP2005:2000-1867];;"epithelioma" EXACT [CSP2005:2000-5801];;"Epithelioma, malignant (morphologic abnormality)" EXACT [SNOMEDCT_2005_07_31:71298006];;"malignant Epithelioma" EXACT [NCI2004_11_17:C6927];;"malignant epithelioma" EXACT []
|comment=
|comment=
|alt_id=DOID:2428;;DOID:6570
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="A cell type cancer that has_material_basis_in abnormally proliferating cells derived_from epithelial cells." [url:http://en.wikipedia.org/wiki/Carcinoma]
|subset=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=DOID:305
|is_a=DOID:0050687
|is_obsolete=
|located_in=
|located_in=
|name=carcinoma
|namespace=disease_ontology
|obo_creation_date=
|part_of=
|part_of=
|preceded_by=
|property_value=IAO:0000412 file:/Users/cjm/Dropbox/fantom5/HumanDO.obo
|property_value=IAO:0000412 file:/Users/cjm/Dropbox/fantom5/HumanDO.obo
|is_obsolete=
|subset=
|preceded_by=
|synonym="carcinoma" EXACT [CSP2005:2000-1867];;"epithelioma" EXACT [CSP2005:2000-5801];;"Epithelioma, malignant (morphologic abnormality)" EXACT [SNOMEDCT_2005_07_31:71298006];;"malignant Epithelioma" EXACT [NCI2004_11_17:C6927];;"malignant epithelioma" EXACT []
|union_of=
|xref=MSH:D002277;;NCI:C2916;;SNOMEDCT_2010_1_31:118285006;;SNOMEDCT_2010_1_31:134207000;;SNOMEDCT_2010_1_31:154433003;;SNOMEDCT_2010_1_31:188083002;;SNOMEDCT_2010_1_31:189546004;;SNOMEDCT_2010_1_31:189549006;;SNOMEDCT_2010_1_31:189559007;;SNOMEDCT_2010_1_31:269513004;;SNOMEDCT_2010_1_31:68453008;;SNOMEDCT_2010_1_31:71298006;;UMLS_CUI:C0007097;;UMLS_CUI:C0553707;;UMLS_CUI:C1368683
}}
}}

Revision as of 10:34, 12 September 2014

Name:carcinoma
Namespace:disease_ontology
Definition:"A cell type cancer that has_material_basis_in abnormally proliferating cells derived_from epithelial cells." [url:http://en.wikipedia.org/wiki/Carcinoma]
Xrefs:
links:

MSH:D002277
NCI:C2916
SNOMEDCT_2010_1_31:118285006
SNOMEDCT_2010_1_31:134207000
SNOMEDCT_2010_1_31:154433003
SNOMEDCT_2010_1_31:188083002
SNOMEDCT_2010_1_31:189546004
SNOMEDCT_2010_1_31:189549006
SNOMEDCT_2010_1_31:189559007
SNOMEDCT_2010_1_31:269513004
SNOMEDCT_2010_1_31:68453008
SNOMEDCT_2010_1_31:71298006
UMLS_CUI:C0007097
UMLS_CUI:C0553707

UMLS_CUI:C1368683
Synonyms: "carcinoma" EXACT [CSP2005:2000-1867]
"epithelioma" EXACT [CSP2005:2000-5801]
"Epithelioma, malignant (morphologic abnormality)" EXACT [SNOMEDCT_2005_07_31:71298006]
"malignant Epithelioma" EXACT [NCI2004_11_17:C6927]
"malignant epithelioma" EXACT []
Alt_id: DOID:2428
DOID:6570

Ontology association<br>Each term has an is_a parent in the Disease Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to DISEASE ontologies.<br><br>link to ontology dataset<br>data


Parents

is_a:DOID:0050687(cell type cancer)



Children


is a:DOID:1749 (squamous cell carcinoma),DOID:2671 (transitional cell carcinoma),DOID:299 (adenocarcinoma),DOID:5662 (pleomorphic carcinoma)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples

Human (Homo sapiens)

... further results Mouse (Mus musculus)

... further results

Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with DOID:305 (carcinoma), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data