DOID:305: Difference between revisions
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{{DOID | {{DOID | ||
| | |alt_id=DOID:2428;;DOID:6570 | ||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
| | |def="A cell type cancer that has_material_basis_in abnormally proliferating cells derived_from epithelial cells." [url:http://en.wikipedia.org/wiki/Carcinoma] | ||
|derives_from= | |derives_from= | ||
|develops_from= | |develops_from= | ||
|disjoint_from= | |||
|has_quality= | |has_quality= | ||
|id=DOID:305 | |||
|is_a=DOID:0050687 | |||
|is_obsolete= | |||
|located_in= | |located_in= | ||
|name=carcinoma | |||
|namespace=disease_ontology | |||
|obo_creation_date= | |||
|part_of= | |part_of= | ||
|preceded_by= | |||
|property_value=IAO:0000412 file:/Users/cjm/Dropbox/fantom5/HumanDO.obo | |property_value=IAO:0000412 file:/Users/cjm/Dropbox/fantom5/HumanDO.obo | ||
| | |subset= | ||
| | |synonym="carcinoma" EXACT [CSP2005:2000-1867];;"epithelioma" EXACT [CSP2005:2000-5801];;"Epithelioma, malignant (morphologic abnormality)" EXACT [SNOMEDCT_2005_07_31:71298006];;"malignant Epithelioma" EXACT [NCI2004_11_17:C6927];;"malignant epithelioma" EXACT [] | ||
|union_of= | |||
|xref=MSH:D002277;;NCI:C2916;;SNOMEDCT_2010_1_31:118285006;;SNOMEDCT_2010_1_31:134207000;;SNOMEDCT_2010_1_31:154433003;;SNOMEDCT_2010_1_31:188083002;;SNOMEDCT_2010_1_31:189546004;;SNOMEDCT_2010_1_31:189549006;;SNOMEDCT_2010_1_31:189559007;;SNOMEDCT_2010_1_31:269513004;;SNOMEDCT_2010_1_31:68453008;;SNOMEDCT_2010_1_31:71298006;;UMLS_CUI:C0007097;;UMLS_CUI:C0553707;;UMLS_CUI:C1368683 | |||
}} | }} |
Revision as of 10:34, 12 September 2014
Name: | carcinoma | |
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Namespace: | disease_ontology | |
Definition: | "A cell type cancer that has_material_basis_in abnormally proliferating cells derived_from epithelial cells." [url:http://en.wikipedia.org/wiki/Carcinoma] | |
Xrefs: |
| |
Synonyms: |
"carcinoma" EXACT [CSP2005:2000-1867] "epithelioma" EXACT [CSP2005:2000-5801] "Epithelioma, malignant (morphologic abnormality)" EXACT [SNOMEDCT_2005_07_31:71298006] "malignant Epithelioma" EXACT [NCI2004_11_17:C6927] "malignant epithelioma" EXACT [] | |
Alt_id: |
DOID:2428 DOID:6570 |
Ontology association<br>Each term has an is_a parent in the Disease Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to DISEASE ontologies.<br><br>link to ontology dataset<br>data
Parents
is_a: | DOID:0050687(cell type cancer) |
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Children
is a: | DOID:1749 (squamous cell carcinoma),DOID:2671 (transitional cell carcinoma),DOID:299 (adenocarcinoma),DOID:5662 (pleomorphic carcinoma) |
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Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples
Human (Homo sapiens)
- 10408-106B3 (lung adenocarcinoma cell line:PC-14)
- 10411-106B6 (renal cell carcinoma cell line:OS-RC-2)
- 10412-106B7 (malignant trichilemmal cyst cell line:DJM-1)
- 10415-106C1 (gall bladder carcinoma cell line:TGBC2TKB)
- 10417-106C3 (papillotubular adenocarcinoma cell line:TGBC18TKB)
- 10418-106C4 (transitional-cell carcinoma cell line:5637)
- 10419-106C5 (breast carcinoma cell line:MDA-MB-453)
- 10420-106C6 (colon carcinoma cell line:COLO-320)
- 10426-106D3 (epidermoid carcinoma cell line:A431)
- 10428-106D5 (anaplastic carcinoma cell line:8305C)
... further results Mouse (Mus musculus)
- 10408-106B3 (lung adenocarcinoma cell line:PC-14)
- 10411-106B6 (renal cell carcinoma cell line:OS-RC-2)
- 10412-106B7 (malignant trichilemmal cyst cell line:DJM-1)
- 10415-106C1 (gall bladder carcinoma cell line:TGBC2TKB)
- 10417-106C3 (papillotubular adenocarcinoma cell line:TGBC18TKB)
- 10418-106C4 (transitional-cell carcinoma cell line:5637)
- 10419-106C5 (breast carcinoma cell line:MDA-MB-453)
- 10420-106C6 (colon carcinoma cell line:COLO-320)
- 10426-106D3 (epidermoid carcinoma cell line:A431)
- 10428-106D5 (anaplastic carcinoma cell line:8305C)
Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with DOID:305 (carcinoma), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data