Personal tools

UBERON:0001529: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
Line 18: Line 18:
|has_quality=
|has_quality=
|located_in=
|located_in=
|part_of=
|part_of=UBERON:0007204
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|is_obsolete=
|is_obsolete=
|preceded_by=
|preceded_by=
}}
}}

Revision as of 13:28, 27 June 2012

Name:brachiocephalic artery
Definition:"The brachiocephalic artery (or brachiocephalic trunk or innominate artery) is an artery of the mediastinum that supplies blood to the right arm and the head and neck. It is the first branch of the aortic arch, and soon after it emerges, the brachiocephalic artery divides into the right common carotid artery and the right subclavian artery. There is no brachiocephalic artery for the left side of the body. The left common carotid, and the left subclavian artery, come directly off the aortic arch. However, there are two brachiocephalic veins. [WP,unvetted]." [Wikipedia:Brachiocephalic_artery]
Xrefs:
links:

EFO:0002550
EHDAA2:0000835
EMAPA:17615
FMA:3932
GAID:476
galen:BrachioCephalicArtery
[1]
[ 200px-Gray506.svg.png 200px-Gray506.svg.png]
MA:0001922
MESH:A.07.231.114.145
ncithesaurus:Innominate_Artery
OpenCyc:Mx4rv9mMTpwpEbGdrcN5Y29ycA

SCTID:244244002
Synonyms: "brachiocephalic trunk" EXACT [MA:0001922]
"innominate artery" EXACT []
"truncus brachiocephalicus" EXACT [FMA:3932, FMA:TA]
"truncus brachiocephalicus" RELATED LATIN [Wikipedia:Brachiocephalic_artery]
Alt_id: UBERON:FMA_3932-MA_0001922
Subset: uberon_slim

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0004573(systemic artery)
part_of:UBERON:0007204(brachiocephalic vasculature)



Children

part of:CL:0002589 (smooth muscle cell of the brachiocephalic vasculature)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)

  • 11284-116I6 (Smooth Muscle Cells - Brachiocephalic, donor1)
  • 11361-117I2 (Smooth Muscle Cells - Brachiocephalic, donor2)
  • 11433-118H2 (Smooth Muscle Cells - Brachiocephalic, donor3)


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0001529 (brachiocephalic artery), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
4.52e-50FFCP PHASE1:Hg19::chr7:46213564..46213575,+#_009f65de5daf534c483eaa8808c64412p@chr7:46213564..46213575, +
4.52e-50FFCP PHASE2:Hg19::chr7:46213564..46213575,+#_009f65de5daf534c483eaa8808c64412p@chr7:46213564..46213575, +
4.52e-50FFCP PHASE1:Hg19::chr7:46213607..46213616,+#_009f65de5daf534c483eaa8808c64412p@chr7:46213607..46213616, +
4.52e-50FFCP PHASE2:Hg19::chr7:46213607..46213616,+#_009f65de5daf534c483eaa8808c64412p@chr7:46213607..46213616, +
5.04e-34FFCP PHASE1:Hg19::chr8:69834272..69834299,-#_d7f6e7534935ef3406eb194e68ce6e34p@chr8:69834272..69834299, -
5.04e-34FFCP PHASE2:Hg19::chr12:76175239..76175250,-#_d7f6e7534935ef3406eb194e68ce6e34p@chr12:76175239..76175250, -
5.04e-34FFCP PHASE2:Hg19::chr8:69834272..69834299,-#_d7f6e7534935ef3406eb194e68ce6e34p@chr8:69834272..69834299, -
5.04e-34FFCP PHASE1:Hg19::chr7:46213930..46213940,+#_d7f6e7534935ef3406eb194e68ce6e34p@chr7:46213930..46213940, +
5.04e-34FFCP PHASE1:Hg19::chr12:76175239..76175250,-#_d7f6e7534935ef3406eb194e68ce6e34p@chr12:76175239..76175250, -
5.04e-34FFCP PHASE2:Hg19::chr7:46213930..46213940,+#_d7f6e7534935ef3406eb194e68ce6e34p@chr7:46213930..46213940, +
4.55e-29FFCP PHASE1:Hg19::chr1:162954730..162954735,+#_b0d2a1dd66fc0f13e7167836c19d64cap@chr1:162954730..162954735, +
4.55e-29FFCP PHASE2:Hg19::chr1:162954730..162954735,+#_b0d2a1dd66fc0f13e7167836c19d64cap@chr1:162954730..162954735, +
5.56e-26FFCP PHASE1:Hg19::chr7:46214057..46214073,+#_e8aa2b873c1194fece0fed4ca7c94ca7p@chr7:46214057..46214073, +
5.56e-26FFCP PHASE2:Hg19::chr5:102847532..102847538,+#_e8aa2b873c1194fece0fed4ca7c94ca7p@chr5:102847532..102847538, +
5.56e-26FFCP PHASE2:Hg19::chr7:46214057..46214073,+#_e8aa2b873c1194fece0fed4ca7c94ca7p@chr7:46214057..46214073, +
5.56e-26FFCP PHASE1:Hg19::chr7:82172409..82172413,+#_e8aa2b873c1194fece0fed4ca7c94ca7p@chr7:82172409..82172413, +
5.56e-26FFCP PHASE2:Hg19::chr7:82172409..82172413,+#_e8aa2b873c1194fece0fed4ca7c94ca7p@chr7:82172409..82172413, +
5.56e-26FFCP PHASE1:Hg19::chr5:102847532..102847538,+#_e8aa2b873c1194fece0fed4ca7c94ca7p@chr5:102847532..102847538, +
5.56e-26FFCP PHASE1:Hg19::chr6:121837348..121837351,+#_e8aa2b873c1194fece0fed4ca7c94ca7p@chr6:121837348..121837351, +
5.56e-26FFCP PHASE2:Hg19::chr6:121837348..121837351,+#_e8aa2b873c1194fece0fed4ca7c94ca7p@chr6:121837348..121837351, +
7.14e-26FFCP PHASE1:Hg19::chr7:46214090..46214099,+#_f2da993ac580361136de49e818602a08p@chr7:46214090..46214099, +
7.14e-26FFCP PHASE2:Hg19::chr7:46214090..46214099,+#_f2da993ac580361136de49e818602a08p@chr7:46214090..46214099, +
9.18e-26FFCP PHASE1:Hg19::chr11:73000449..73000459,+#_6cf29b28af2dfcdb62de8393b802b334p13@P2RY6
9.18e-26FFCP PHASE2:Hg19::chr11:73000449..73000459,+#_6cf29b28af2dfcdb62de8393b802b334p13@P2RY6
1.26e-21FFCP PHASE1:Hg19::chr9:140351903..140351920,-#_594648b65f44b92f6df55ee769ca3b0cp6@NELF
1.26e-21FFCP PHASE2:Hg19::chr9:140351903..140351920,-#_594648b65f44b92f6df55ee769ca3b0cp6@NELF
5.7e-21FFCP PHASE1:Hg19::chr5:95053375..95053385,+#_422ab5f47e69e5ae98cd1a72677f0bb7p30@RHOBTB3
5.7e-21FFCP PHASE2:Hg19::chr5:95053375..95053385,+#_422ab5f47e69e5ae98cd1a72677f0bb7p30@RHOBTB3
5.4e-20FFCP PHASE1:Hg19::chr4:74702707..74702718,+#_759a658d963508c4edc310ff947b9090p7@CXCL6
5.4e-20FFCP PHASE2:Hg19::chr4:74702707..74702718,+#_759a658d963508c4edc310ff947b9090p7@CXCL6
5.88e-19FFCP PHASE2:Hg19::chr17:67875049..67875058,+#_b6c5792e4863661b87e2b45beaccce00p@chr17:67875049..67875058, +
5.88e-19FFCP PHASE1:Hg19::chr17:67875049..67875058,+#_b6c5792e4863661b87e2b45beaccce00p@chr17:67875049..67875058, +
2.9e-18FFCP PHASE2:Hg19::chr1:79219369..79219376,+#_ddd7b44f46081d09ab31025ad0e77d0cp@chr1:79219369..79219376, +
2.9e-18FFCP PHASE1:Hg19::chr1:79219369..79219376,+#_ddd7b44f46081d09ab31025ad0e77d0cp@chr1:79219369..79219376, +
7.67e-18FFCP PHASE1:Hg19::chr3:30226342..30226387,-#_fff2a6b360b0398729eaf83d9c9318b3p@chr3:30226342..30226387, -
7.67e-18FFCP PHASE2:Hg19::chr3:30226342..30226387,-#_fff2a6b360b0398729eaf83d9c9318b3p@chr3:30226342..30226387, -
9.07e-18FFCP PHASE1:Hg19::chr1:183204105..183204116,+#_26c63a8c696c79cf9d16fa55430e400bp@chr1:183204105..183204116, +
9.07e-18FFCP PHASE2:Hg19::chr1:183204105..183204116,+#_26c63a8c696c79cf9d16fa55430e400bp@chr1:183204105..183204116, +
9.07e-18FFCP PHASE1:Hg19::chr11:33891541..33891551,-#_26c63a8c696c79cf9d16fa55430e400bp10@LMO2
9.07e-18FFCP PHASE2:Hg19::chr11:33891541..33891551,-#_26c63a8c696c79cf9d16fa55430e400bp10@LMO2
1.04e-17FFCP PHASE1:Hg19::chr8:69765189..69765209,-#_318d7b4ef1a3f8ec04db7d616b16430ep1@ENST00000522354
1.04e-17FFCP PHASE2:Hg19::chr8:69765189..69765209,-#_318d7b4ef1a3f8ec04db7d616b16430ep1@ENST00000522354
1.27e-17FFCP PHASE1:Hg19::chr8:128926504..128926507,-#_7bbdc4f689e6df2aaad1903f3c907123p@chr8:128926504..128926507, -
1.27e-17FFCP PHASE2:Hg19::chr8:128926504..128926507,-#_7bbdc4f689e6df2aaad1903f3c907123p@chr8:128926504..128926507, -
3.12e-17FFCP PHASE1:Hg19::chr17:12453278..12453291,+#_e5cd6d1eacfeb2df5a3935c741da798fp1@FLJ34690
3.12e-17FFCP PHASE2:Hg19::chr17:12453278..12453291,+#_e5cd6d1eacfeb2df5a3935c741da798fp1@FLJ34690
1.08e-16FFCP PHASE1:Hg19::chr7:41956273..41956284,-#_9f078076860df4faaee402bd39978aedp@chr7:41956273..41956284, -
1.08e-16FFCP PHASE2:Hg19::chr7:41956273..41956284,-#_9f078076860df4faaee402bd39978aedp@chr7:41956273..41956284, -
7.31e-16FFCP PHASE1:Hg19::chr10:33247025..33247030,+#_99b737a22db579d1c2912d76a3d5ada8p@chr10:33247025..33247030, +
7.31e-16FFCP PHASE2:Hg19::chr10:33247025..33247030,+#_99b737a22db579d1c2912d76a3d5ada8p@chr10:33247025..33247030, +
1.08e-15FFCP PHASE1:Hg19::chr6:53359400..53359406,+#_e69e16510f28c17eb8dab2526c141028p@chr6:53359400..53359406, +
1.08e-15FFCP PHASE2:Hg19::chr6:53359400..53359406,+#_e69e16510f28c17eb8dab2526c141028p@chr6:53359400..53359406, +
1.23e-15FFCP PHASE1:Hg19::chr7:45952362..45952373,-#_17a12e146697b95b0d005fc379a0e1c8p25@IGFBP3
1.23e-15FFCP PHASE2:Hg19::chr7:45952362..45952373,-#_17a12e146697b95b0d005fc379a0e1c8p25@IGFBP3
1.33e-15FFCP PHASE1:Hg19::chr4:99934696..99934700,-#_a1b5c7ef068cbff76f1b4f864ef1f9e4p@chr4:99934696..99934700, -
1.33e-15FFCP PHASE1:Hg19::chr5:63961948..63961959,-#_a1b5c7ef068cbff76f1b4f864ef1f9e4p@chr5:63961948..63961959, -
1.33e-15FFCP PHASE2:Hg19::chr5:63961948..63961959,-#_a1b5c7ef068cbff76f1b4f864ef1f9e4p@chr5:63961948..63961959, -
1.33e-15FFCP PHASE2:Hg19::chr4:99934696..99934700,-#_a1b5c7ef068cbff76f1b4f864ef1f9e4p@chr4:99934696..99934700, -
2.05e-15FFCP PHASE1:Hg19::chr21:26713474..26713508,-#_c6ba6e1945fc4e9e892d48c16f5c0e86p@chr21:26713474..26713508, -
2.05e-15FFCP PHASE2:Hg19::chr21:26713474..26713508,-#_c6ba6e1945fc4e9e892d48c16f5c0e86p@chr21:26713474..26713508, -
2.05e-15FFCP PHASE1:Hg19::chr9:118431048..118431059,+#_c6ba6e1945fc4e9e892d48c16f5c0e86p@chr9:118431048..118431059, +
2.05e-15FFCP PHASE2:Hg19::chr9:118431048..118431059,+#_c6ba6e1945fc4e9e892d48c16f5c0e86p@chr9:118431048..118431059, +
2.24e-15FFCP PHASE2:Hg19::chr3:67141193..67141198,+#_c48d6e1a2640e9e2498847d834ab2ab7p@chr3:67141193..67141198, +
2.24e-15FFCP PHASE1:Hg19::chr3:67141193..67141198,+#_c48d6e1a2640e9e2498847d834ab2ab7p@chr3:67141193..67141198, +
2.37e-15FFCP PHASE2:Hg19::chr4:67300735..67300776,-#_88240a851978f52ec40b267a4062749ap@chr4:67300735..67300776, -
2.37e-15FFCP PHASE1:Hg19::chr4:67300735..67300776,-#_88240a851978f52ec40b267a4062749ap@chr4:67300735..67300776, -
2.74e-15FFCP PHASE2:Hg19::chr12:65959975..65959997,+#_f8d5b077882a5eb63f7231bb1fcd94b7p@chr12:65959975..65959997, +
2.74e-15FFCP PHASE1:Hg19::chr12:65959975..65959997,+#_f8d5b077882a5eb63f7231bb1fcd94b7p@chr12:65959975..65959997, +
3.37e-15FFCP PHASE2:Hg19::chr3:106484411..106484418,+#_04313dcadd9b0ce90fdfb12550dc6229p@chr3:106484411..106484418, +
3.37e-15FFCP PHASE1:Hg19::chr3:106484411..106484418,+#_04313dcadd9b0ce90fdfb12550dc6229p@chr3:106484411..106484418, +
3.46e-15FFCP PHASE2:Hg19::chr9:118916228..118916241,+#_1ae970dc0f908e81e8b3b39aa159624ap18@PAPPA
3.46e-15FFCP PHASE1:Hg19::chr9:118916228..118916241,+#_1ae970dc0f908e81e8b3b39aa159624ap18@PAPPA
4.61e-15FFCP PHASE1:Hg19::chr9:118435168..118435186,+#_dc426854c1bce6050e7397ebb3c2e0a6p@chr9:118435168..118435186, +
4.61e-15FFCP PHASE2:Hg19::chr9:118435168..118435186,+#_dc426854c1bce6050e7397ebb3c2e0a6p@chr9:118435168..118435186, +
5.71e-15FFCP PHASE1:Hg19::chr8:26248799..26248836,-#_36846941d518a01abe050d661daab74fp@chr8:26248799..26248836, -
5.71e-15FFCP PHASE2:Hg19::chr8:26248799..26248836,-#_36846941d518a01abe050d661daab74fp@chr8:26248799..26248836, -
1.37e-14FFCP PHASE1:Hg19::chr7:93516018..93516037,-#_f1e5b1ff879aaeca377e237e759a3e66p@chr7:93516018..93516037, -
1.37e-14FFCP PHASE2:Hg19::chr7:93516018..93516037,-#_f1e5b1ff879aaeca377e237e759a3e66p@chr7:93516018..93516037, -
2.36e-14FFCP PHASE1:Hg19::chr3:106569465..106569481,-#_84ecb3c2ea3a10742f3aee0641defe52p@chr3:106569465..106569481, -
2.36e-14FFCP PHASE2:Hg19::chr3:106569465..106569481,-#_84ecb3c2ea3a10742f3aee0641defe52p@chr3:106569465..106569481, -
5.17e-14FFCP PHASE1:Hg19::chr18:25757224..25757232,-#_dc0c99e59ff86898eaca5f30dbc7770ep19@CDH2
5.17e-14FFCP PHASE2:Hg19::chr18:25757224..25757232,-#_dc0c99e59ff86898eaca5f30dbc7770ep19@CDH2
5.44e-14FFCP PHASE1:Hg19::chr7:45960456..45960484,+#_711d6bf50ff8ef2bbe462ad471f32529p@chr7:45960456..45960484, +
5.44e-14FFCP PHASE2:Hg19::chr7:45960456..45960484,+#_711d6bf50ff8ef2bbe462ad471f32529p@chr7:45960456..45960484, +
6.43e-14FFCP PHASE1:Hg19::chr5:102847592..102847595,+#_25f1a14bdb7d73cf9af882d312bd8e20p@chr5:102847592..102847595, +
6.43e-14FFCP PHASE2:Hg19::chr5:102847592..102847595,+#_25f1a14bdb7d73cf9af882d312bd8e20p@chr5:102847592..102847595, +
9.4e-14FFCP PHASE2:Hg19::chr6:151392051..151392059,+#_99208504a9715be84b0877e91807a8d9p@chr6:151392051..151392059, +
9.4e-14FFCP PHASE2:Hg19::chr16:59666186..59666189,-#_99208504a9715be84b0877e91807a8d9p@chr16:59666186..59666189, -
9.4e-14FFCP PHASE1:Hg19::chr16:59666186..59666189,-#_99208504a9715be84b0877e91807a8d9p@chr16:59666186..59666189, -
9.4e-14FFCP PHASE1:Hg19::chr6:151392051..151392059,+#_99208504a9715be84b0877e91807a8d9p@chr6:151392051..151392059, +
1.11e-13FFCP PHASE1:Hg19::chr4:74736294..74736305,+#_60c9806b8106f0aadf283719f32d629fp@chr4:74736294..74736305, +
1.11e-13FFCP PHASE2:Hg19::chr4:74736294..74736305,+#_60c9806b8106f0aadf283719f32d629fp@chr4:74736294..74736305, +
1.25e-13FFCP PHASE1:Hg19::chr9:118916382..118916386,+#_eb56593605bb2f1995406725027268e8p19@PAPPA
1.25e-13FFCP PHASE2:Hg19::chr9:118916382..118916386,+#_eb56593605bb2f1995406725027268e8p19@PAPPA
1.37e-13FFCP PHASE1:Hg19::chr9:118356219..118356259,+#_2b077e08ee5683fa36b23f58db71eae4p@chr9:118356219..118356259, +
1.37e-13FFCP PHASE2:Hg19::chr9:118356219..118356259,+#_2b077e08ee5683fa36b23f58db71eae4p@chr9:118356219..118356259, +
2.12e-13FFCP PHASE2:Hg19::chr4:74608220..74608239,-#_96baac5de33b490b57199f15268c0111p@chr4:74608220..74608239, -
2.12e-13FFCP PHASE1:Hg19::chr4:74608220..74608239,-#_96baac5de33b490b57199f15268c0111p@chr4:74608220..74608239, -
5.6e-13FFCP PHASE1:Hg19::chr2:159994500..159994523,+#_ae5fff2fbf7efb2958b8363c42b6d563p@chr2:159994500..159994523, +
5.6e-13FFCP PHASE2:Hg19::chr2:159994500..159994523,+#_ae5fff2fbf7efb2958b8363c42b6d563p@chr2:159994500..159994523, +

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=UBERON:0001529&oldid=1837426"