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|subset=uberon_slim;;vertebrate_core
|subset=uberon_slim;;vertebrate_core
|derives_from=
|derives_from=
|develops_from=
|develops_from=UBERON:0003051
|has_quality=
|has_quality=
|located_in=
|located_in=
|part_of=
|part_of=UBERON:0001690
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl;;UBPROP:0000001 "The auditory (hearing) and vestibular (balance) organ of the fish, equivalent to the inner ear of amniotes. (See Anatomical Atlas entry for ear by T. Whitfield.)[TAO]" xsd:string
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl;;UBPROP:0000001 "The auditory (hearing) and vestibular (balance) organ of the fish, equivalent to the inner ear of amniotes. (See Anatomical Atlas entry for ear by T. Whitfield.)[TAO]" xsd:string
|is_obsolete=
|is_obsolete=
|preceded_by=
|preceded_by=
}}
}}

Revision as of 13:29, 27 June 2012

Name:internal ear
Definition:"Complex labyrinthine structure that comprises sensory endorgans specialized for vestibular, auditory, and acoustico-vestibular sensation." [PMID:16217737, Wikipedia:Internal_ear, ZFIN:curator]
Xrefs:
links:

AAO:0000238
BTO:0000630
EFO:0001363
EHDAA2:0000831
EHDAA:504
EMAPA:16194
EV:0100361
FMA:60909
GAID:871
galen:InnerEar
[ 200px-Gray923.png 200px-Gray923.png]
MA:0000237
MAT:0000145
MESH:A.09.246.631
MIAA:0000145
ncithesaurus:Internal_Ear
NIF_GrossAnatomy:birnlex_1196
OpenCyc:Mx4rwJ8SsJwpEbGdrcN5Y29ycA
SCTID:181189006
TAO:0000217
VHOG:0000284
XAO:0000192

ZFA:0000217
Synonyms: "auris interna" RELATED [BTO:0000630]
"inner ear" EXACT []
"labyrinth" RELATED []
"otocyst" RELATED []
Comments:This class was created automatically from a combination of ontologies
Alt_id: UBERON:FMA_60909-MA_0000237-MIAA_0000145-XAO_0000192-ZFA_0000217
Subset: uberon_slim
vertebrate_core

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0000477(anatomical cluster),UBERON:0004121(ectoderm-derived structure),UBERON:0010314(structure with developmental contribution from neural crest)
develops_from:UBERON:0003051(ear vesicle)
part_of:UBERON:0001690(ear)



Children

derives from:FF:0000256 (Inner ear stem cell (1st generation stem cell) sample),FF:0000257 (Inner ear stem cells (4th generation stem cells) sample),FF:0000258 (Inner ear stem cell (10 days differentiation) sample),FF:0000259 (Inner ear stem cell (3 days differentiation) sample)
part of:FF:0000256 (Inner ear stem cell (1st generation stem cell) sample),FF:0000257 (Inner ear stem cells (4th generation stem cells) sample),FF:0000258 (Inner ear stem cell (10 days differentiation) sample),FF:0000259 (Inner ear stem cell (3 days differentiation) sample),UBERON:0001839 (bony labyrinth),UBERON:0001849 (membranous labyrinth),UBERON:0004637 (otic capsule),UBERON:0010113 (future membranous labyrinth),UBERON:0010349 (otic capsule pre-cartilage condensation),UBERON:0010351 (otic capsule cartilage condensation)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Mouse (Mus musculus)

  • 12157-128G6 (Sox2+ Supporting cells - organ of corti, pool1)
  • 12158-128G7 (Atoh+ Inner ear hair cells - organ of corti, pool1)
  • 12215-129E1 (Inner ear stem cells, 1st generation stem cells, pool1)
  • 12216-129E2 (Inner ear stem cells, 4th generation stem cells, pool1)
  • 12217-129E3 (Inner ear stem cells, differentiation, day03, pool1)
  • 12218-129E4 (Inner ear stem cells, differentiation, day10, pool1)


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0001846 (internal ear), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
1.87e-86FFCP PHASE2:Mm9::chr11:120222470..120222516,+#_290235bc8c76f63330a2b730572b2dadp2@Fscn2
1.87e-86FFCP PHASE1:Mm9::chr10:67371994..67372010,+#_290235bc8c76f63330a2b730572b2dadp@chr10:67371994..67372010, +
1.87e-86FFCP PHASE1:Mm9::chr3:35012425..35012439,+#_290235bc8c76f63330a2b730572b2dadp@chr3:35012425..35012439, +
1.87e-86FFCP PHASE2:Mm9::chr11:102123554..102123566,+#_290235bc8c76f63330a2b730572b2dadp4@BC030867
1.87e-86FFCP PHASE2:Mm9::chr5:28035962..28035983,+#_290235bc8c76f63330a2b730572b2dadp@chr5:28035962..28035983, +
1.87e-86FFCP PHASE1:Mm9::chr1:172843796..172843799,-#_290235bc8c76f63330a2b730572b2dadp@chr1:172843796..172843799, -
1.87e-86FFCP PHASE2:Mm9::chr3:81012915..81012923,+#_290235bc8c76f63330a2b730572b2dadp@chr3:81012915..81012923, +
1.87e-86FFCP PHASE2:Mm9::chr10:107349309..107349318,-#_290235bc8c76f63330a2b730572b2dadp4@Otogl
1.87e-86FFCP PHASE1:Mm9::chr5:68423014..68423037,+#_290235bc8c76f63330a2b730572b2dadp1@Grxcr1
1.87e-86FFCP PHASE1:Mm9::chr18:66033526..66033539,-#_290235bc8c76f63330a2b730572b2dadp@chr18:66033526..66033539, -
1.87e-86FFCP PHASE2:Mm9::chr17:13983179..13983190,+#_290235bc8c76f63330a2b730572b2dadp@chr17:13983179..13983190, +
1.87e-86FFCP PHASE1:Mm9::chr9:42207965..42207978,-#_290235bc8c76f63330a2b730572b2dadp5@Tecta
1.87e-86FFCP PHASE1:Mm9::chr14:47293496..47293510,-#_290235bc8c76f63330a2b730572b2dadp@chr14:47293496..47293510, -
1.87e-86FFCP PHASE2:Mm9::chr9:42206784..42206793,-#_290235bc8c76f63330a2b730572b2dadp@chr9:42206784..42206793, -
1.87e-86FFCP PHASE2:Mm9::chr19:55255289..55255299,+#_290235bc8c76f63330a2b730572b2dadp2@Tectb
1.87e-86FFCP PHASE2:Mm9::chr5:21371424..21371435,-#_290235bc8c76f63330a2b730572b2dadp2@Slc26a5
1.87e-86FFCP PHASE2:Mm9::chr13:78257518..78257522,+#_290235bc8c76f63330a2b730572b2dadp@chr13:78257518..78257522, +
1.87e-86FFCP PHASE2:Mm9::chr1:16651649..16651655,+#_290235bc8c76f63330a2b730572b2dadp@chr1:16651649..16651655, +
1.87e-86FFCP PHASE1:Mm9::chr13:78257454..78257465,+#_290235bc8c76f63330a2b730572b2dadp@chr13:78257454..78257465, +
1.87e-86FFCP PHASE2:Mm9::chr2:29935952..29935993,+#_290235bc8c76f63330a2b730572b2dadp7@Pkn3
1.87e-86FFCP PHASE1:Mm9::chr5:30710416..30710440,-#_290235bc8c76f63330a2b730572b2dadp2@Otof
1.87e-86FFCP PHASE1:Mm9::chr9:42206784..42206793,-#_290235bc8c76f63330a2b730572b2dadp@chr9:42206784..42206793, -
1.87e-86FFCP PHASE1:Mm9::chr2:67011941..67011951,+#_290235bc8c76f63330a2b730572b2dadp3@Gm1322
1.87e-86FFCP PHASE1:Mm9::chr14:20649897..20649907,+#_290235bc8c76f63330a2b730572b2dadp@chr14:20649897..20649907, +
1.87e-86FFCP PHASE2:Mm9::chr1:93235228..93235249,+#_290235bc8c76f63330a2b730572b2dadp@chr1:93235228..93235249, +
1.87e-86FFCP PHASE2:Mm9::chr15:12848147..12848162,+#_290235bc8c76f63330a2b730572b2dadp@chr15:12848147..12848162, +
1.87e-86FFCP PHASE1:Mm9::chr4:154208086..154208123,+#_290235bc8c76f63330a2b730572b2dadp@chr4:154208086..154208123, +
1.87e-86FFCP PHASE1:Mm9::chr3:154459184..154459195,+#_290235bc8c76f63330a2b730572b2dadp@chr3:154459184..154459195, +
1.87e-86FFCP PHASE2:Mm9::chr11:8405038..8405048,-#_290235bc8c76f63330a2b730572b2dadp@chr11:8405038..8405048, -
1.87e-86FFCP PHASE2:Mm9::chr7:109265277..109265288,-#_290235bc8c76f63330a2b730572b2dadp4@Chrna10
1.87e-86FFCP PHASE2:Mm9::chr19:21028739..21028785,-#_290235bc8c76f63330a2b730572b2dadp1@Tmc1
1.87e-86FFCP PHASE2:Mm9::chr2:9811162..9811171,-#_290235bc8c76f63330a2b730572b2dadp2@9230102O04Rik
1.87e-86FFCP PHASE2:Mm9::chr14:102297728..102297742,+#_290235bc8c76f63330a2b730572b2dadp@chr14:102297728..102297742, +
1.87e-86FFCP PHASE1:Mm9::chr9:50968647..50968668,-#_290235bc8c76f63330a2b730572b2dadp@chr9:50968647..50968668, -
1.87e-86FFCP PHASE2:Mm9::chr15:89215306..89215315,+#_290235bc8c76f63330a2b730572b2dadp@chr15:89215306..89215315, +
1.87e-86FFCP PHASE2:Mm9::chr7:109052262..109052291,-#_290235bc8c76f63330a2b730572b2dadp1@Tomt
1.87e-86FFCP PHASE1:Mm9::chr15:65641741..65641748,+#_290235bc8c76f63330a2b730572b2dadp@chr15:65641741..65641748, +
1.87e-86FFCP PHASE2:Mm9::chr5:30710403..30710406,-#_290235bc8c76f63330a2b730572b2dadp10@Otof
1.87e-86FFCP PHASE1:Mm9::chr18:81327205..81327211,+#_290235bc8c76f63330a2b730572b2dadp@chr18:81327205..81327211, +
1.87e-86FFCP PHASE2:Mm9::chr17:31335953..31335957,-#_290235bc8c76f63330a2b730572b2dadp3@Tmprss3
1.87e-86FFCP PHASE1:Mm9::chr10:107349430..107349440,-#_290235bc8c76f63330a2b730572b2dadp3@Otogl
1.87e-86FFCP PHASE2:Mm9::chr9:42207792..42207805,-#_290235bc8c76f63330a2b730572b2dadp11@Tecta
1.87e-86FFCP PHASE1:Mm9::chr12:109905468..109905474,+#_290235bc8c76f63330a2b730572b2dadp@chr12:109905468..109905474, +
1.87e-86FFCP PHASE1:Mm9::chr8:13414266..13414279,+#_290235bc8c76f63330a2b730572b2dadp@chr8:13414266..13414279, +
1.87e-86FFCP PHASE2:Mm9::chr12:109905399..109905416,+#_290235bc8c76f63330a2b730572b2dadp@chr12:109905399..109905416, +
1.87e-86FFCP PHASE1:Mm9::chr3:31585340..31585360,+#_290235bc8c76f63330a2b730572b2dadp@chr3:31585340..31585360, +
1.87e-86FFCP PHASE2:Mm9::chr4:101908153..101908163,+#_290235bc8c76f63330a2b730572b2dadp@chr4:101908153..101908163, +
1.87e-86FFCP PHASE2:Mm9::chr16:93971357..93971363,-#_290235bc8c76f63330a2b730572b2dadp@chr16:93971357..93971363, -
1.87e-86FFCP PHASE1:Mm9::chr8:94180607..94180619,-#_290235bc8c76f63330a2b730572b2dadp@chr8:94180607..94180619, -
1.87e-86FFCP PHASE1:Mm9::chr2:170417150..170417155,-#_290235bc8c76f63330a2b730572b2dadp@chr2:170417150..170417155, -
1.87e-86FFCP PHASE1:Mm9::chr4:115556989..115556997,+#_290235bc8c76f63330a2b730572b2dadp1@Kncn
1.87e-86FFCP PHASE1:Mm9::chr18:59222033..59222043,+#_290235bc8c76f63330a2b730572b2dadp7@A730017C20Rik
1.87e-86FFCP PHASE2:Mm9::chr8:13414289..13414295,+#_290235bc8c76f63330a2b730572b2dadp@chr8:13414289..13414295, +
1.87e-86FFCP PHASE2:Mm9::chr9:66860888..66860899,+#_290235bc8c76f63330a2b730572b2dadp@chr9:66860888..66860899, +
1.87e-86FFCP PHASE2:Mm9::chr2:53464178..53464186,+#_290235bc8c76f63330a2b730572b2dadp@chr2:53464178..53464186, +
1.87e-86FFCP PHASE1:Mm9::chr9:42207792..42207805,-#_290235bc8c76f63330a2b730572b2dadp11@Tecta
1.87e-86FFCP PHASE1:Mm9::chr2:73232344..73232356,-#_290235bc8c76f63330a2b730572b2dadp@chr2:73232344..73232356, -
1.87e-86FFCP PHASE1:Mm9::chr1:93218682..93218691,+#_290235bc8c76f63330a2b730572b2dadp2@Espnl
1.87e-86FFCP PHASE1:Mm9::chr11:8405038..8405048,-#_290235bc8c76f63330a2b730572b2dadp@chr11:8405038..8405048, -
1.87e-86FFCP PHASE1:Mm9::chr7:88068153..88068160,-#_290235bc8c76f63330a2b730572b2dadp10@Sec11a
1.87e-86FFCP PHASE1:Mm9::chr17:13983179..13983190,+#_290235bc8c76f63330a2b730572b2dadp@chr17:13983179..13983190, +
1.87e-86FFCP PHASE2:Mm9::chr13:76964459..76964469,+#_290235bc8c76f63330a2b730572b2dadp15@Mctp1
1.87e-86FFCP PHASE1:Mm9::chr12:77084875..77084885,+#_290235bc8c76f63330a2b730572b2dadp@chr12:77084875..77084885, +
1.87e-86FFCP PHASE1:Mm9::chr2:14685072..14685084,+#_290235bc8c76f63330a2b730572b2dadp41@Cacnb2
1.87e-86FFCP PHASE1:Mm9::chr5:21371424..21371435,-#_290235bc8c76f63330a2b730572b2dadp2@Slc26a5
1.87e-86FFCP PHASE1:Mm9::chr15:89215333..89215341,+#_290235bc8c76f63330a2b730572b2dadp@chr15:89215333..89215341, +
1.87e-86FFCP PHASE2:Mm9::chr10:97109753..97109764,+#_290235bc8c76f63330a2b730572b2dadp3@Epyc
1.87e-86FFCP PHASE2:Mm9::chr2:121206677..121206683,-#_290235bc8c76f63330a2b730572b2dadp3@Strc
1.87e-86FFCP PHASE1:Mm9::chr6:30619378..30619412,-#_290235bc8c76f63330a2b730572b2dadp11@Tsga14
1.87e-86FFCP PHASE1:Mm9::chr16:93971367..93971379,-#_290235bc8c76f63330a2b730572b2dadp@chr16:93971367..93971379, -
1.87e-86FFCP PHASE2:Mm9::chr6:113251570..113251578,+#_290235bc8c76f63330a2b730572b2dadp@chr6:113251570..113251578, +
1.87e-86FFCP PHASE1:Mm9::chr12:13508046..13508055,+#_290235bc8c76f63330a2b730572b2dadp@chr12:13508046..13508055, +
1.87e-86FFCP PHASE1:Mm9::chr17:31335953..31335957,-#_290235bc8c76f63330a2b730572b2dadp3@Tmprss3
1.87e-86FFCP PHASE1:Mm9::chr5:144115382..144115389,+#_290235bc8c76f63330a2b730572b2dadp@chr5:144115382..144115389, +
1.87e-86FFCP PHASE2:Mm9::chr2:73232344..73232356,-#_290235bc8c76f63330a2b730572b2dadp@chr2:73232344..73232356, -
1.87e-86FFCP PHASE2:Mm9::chr1:172843885..172843890,-#_290235bc8c76f63330a2b730572b2dadp@chr1:172843885..172843890, -
1.87e-86FFCP PHASE1:Mm9::chr13:37195838..37195870,-#_290235bc8c76f63330a2b730572b2dadp@chr13:37195838..37195870, -
1.87e-86FFCP PHASE1:Mm9::chr7:139597684..139597691,+#_290235bc8c76f63330a2b730572b2dadp@chr7:139597684..139597691, +
1.87e-86FFCP PHASE1:Mm9::chr14:102297747..102297765,+#_290235bc8c76f63330a2b730572b2dadp@chr14:102297747..102297765, +
1.87e-86FFCP PHASE1:Mm9::chr19:21028739..21028785,-#_290235bc8c76f63330a2b730572b2dadp1@Tmc1
1.87e-86FFCP PHASE2:Mm9::chr3:154459184..154459195,+#_290235bc8c76f63330a2b730572b2dadp@chr3:154459184..154459195, +
1.87e-86FFCP PHASE2:Mm9::chr2:67011941..67011951,+#_290235bc8c76f63330a2b730572b2dadp3@Gm1322
1.87e-86FFCP PHASE2:Mm9::chr9:42207983..42207995,-#_290235bc8c76f63330a2b730572b2dadp3@Tecta
1.87e-86FFCP PHASE2:Mm9::chr1:60561636..60561645,-#_290235bc8c76f63330a2b730572b2dadp@chr1:60561636..60561645, -
1.87e-86FFCP PHASE2:Mm9::chr7:133957514..133957529,+#_290235bc8c76f63330a2b730572b2dadp@chr7:133957514..133957529, +
1.87e-86FFCP PHASE1:Mm9::chr1:172843813..172843834,-#_290235bc8c76f63330a2b730572b2dadp@chr1:172843813..172843834, -
1.87e-86FFCP PHASE1:Mm9::chr11:11599532..11599539,-#_290235bc8c76f63330a2b730572b2dadp@chr11:11599532..11599539, -
1.87e-86FFCP PHASE2:Mm9::chr10:107349378..107349390,-#_290235bc8c76f63330a2b730572b2dadp1@Otogl
1.87e-86FFCP PHASE1:Mm9::chr5:72652660..72652667,+#_290235bc8c76f63330a2b730572b2dadp@chr5:72652660..72652667, +
1.87e-86FFCP PHASE1:Mm9::chr10:107349309..107349318,-#_290235bc8c76f63330a2b730572b2dadp4@Otogl
1.87e-86FFCP PHASE2:Mm9::chr17:13983198..13983203,+#_290235bc8c76f63330a2b730572b2dadp@chr17:13983198..13983203, +
1.87e-86FFCP PHASE1:Mm9::chr9:42207983..42207995,-#_290235bc8c76f63330a2b730572b2dadp3@Tecta
1.87e-86FFCP PHASE1:Mm9::chr7:53496326..53496340,+#_290235bc8c76f63330a2b730572b2dadp1@Otog
1.87e-86FFCP PHASE2:Mm9::chr13:43699188..43699216,+#_290235bc8c76f63330a2b730572b2dadp@chr13:43699188..43699216, +
1.87e-86FFCP PHASE2:Mm9::chr9:42207375..42207384,-#_290235bc8c76f63330a2b730572b2dadp@chr9:42207375..42207384, -
1.87e-86FFCP PHASE2:Mm9::chr19:55256373..55256384,+#_290235bc8c76f63330a2b730572b2dadp@chr19:55256373..55256384, +
1.87e-86FFCP PHASE1:Mm9::chr2:121206667..121206674,-#_290235bc8c76f63330a2b730572b2dadp2@Strc
1.87e-86FFCP PHASE1:Mm9::chr3:154459231..154459240,+#_290235bc8c76f63330a2b730572b2dadp@chr3:154459231..154459240, +
1.87e-86FFCP PHASE2:Mm9::chr13:78322370..78322376,-#_290235bc8c76f63330a2b730572b2dadp4@uc007rhb.1
1.87e-86FFCP PHASE2:Mm9::chr1:182528371..182528385,+#_290235bc8c76f63330a2b730572b2dadp@chr1:182528371..182528385, +










Property "Property value" (as page type) with input value "UBPROP:0000001 "The auditory (hearing) and vestibular (balance) organ of the fish, equivalent to the inner ear of amniotes. (See Anatomical Atlas entry for ear by T. Whitfield.)[TAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.

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