UBERON:0002165: Difference between revisions
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|subset=uberon_slim;;vertebrate_core | |subset=uberon_slim;;vertebrate_core | ||
|derives_from= | |derives_from= | ||
|develops_from= | |develops_from=UBERON:0003084;;UBERON:0007280 | ||
|has_quality= | |has_quality= | ||
|located_in= | |located_in= | ||
|part_of= | |part_of=UBERON:0000948 | ||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl;;UBPROP:0000001 "Layer that lines the lumen of the heart.[TAO]" xsd:string;;UBPROP:0000001 "Part of the heart comprised of thin serous membrane, composed of endothelial tissue, that lines the interior of the heart.[AAO]" xsd:string | |property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl;;UBPROP:0000001 "Layer that lines the lumen of the heart.[TAO]" xsd:string;;UBPROP:0000001 "Part of the heart comprised of thin serous membrane, composed of endothelial tissue, that lines the interior of the heart.[AAO]" xsd:string | ||
|is_obsolete= | |is_obsolete= | ||
|preceded_by= | |preceded_by= | ||
}} | }} | ||
Revision as of 13:31, 27 June 2012
| Name: | endocardium | ||
|---|---|---|---|
| Definition: | "The endocardium is an anatomical structure comprised of an endothelium and an extracellular matrix that forms the innermost layer of tissue of the heart, and lines the heart chambers[GO]. Tunica intima which has as its parts the endothelium of endocardium and the fibroelastic connective tissue that surrounds the cavity of a cardiac chamber[FMA]." [FMA:7280, Wikipedia:Endocardium] | ||
| Xrefs: |
| ||
| Synonyms: | "heart endocardium" EXACT [] | ||
| Comments: | fixed in GO to reflect FMA. See email to David/Varsha June 18 2010 | ||
| Alt_id: | UBERON:FMA_7280-XAO_0000066-ZFA_0001320 | ||
| Subset: |
uberon_slim vertebrate_core |
Gray493.png]
200px-Gray493.png]
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0002523(tunica intima),UBERON:0005983(heart layer) |
|---|---|
| develops_from: | UBERON:0003084(heart primordium),UBERON:0007280(presumptive endocardium) |
| part_of: | UBERON:0000948(heart) |
Children
| part of: | UBERON:0002062 (endocardial cushion) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0002165 (endocardium), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 5.41e-147 | FFCP PHASE2:Hg19::chr7:25815812..25815822,-#_f61ad24957416ad5c33b19055cbe4b93 | p@chr7:25815812..25815822, - |
| 5.41e-147 | FFCP PHASE1:Hg19::chr7:25815812..25815822,-#_f61ad24957416ad5c33b19055cbe4b93 | p@chr7:25815812..25815822, - |
| 8.98e-131 | FFCP PHASE1:Hg19::chr12:3373147..3373149,-#_c7c88a37bb4c4e2d38b4bc5a2ec82b69 | p@chr12:3373147..3373149, - |
| 8.98e-131 | FFCP PHASE2:Hg19::chr12:3373147..3373149,-#_c7c88a37bb4c4e2d38b4bc5a2ec82b69 | p@chr12:3373147..3373149, - |
| 7.78e-118 | FFCP PHASE1:Hg19::chr1:20355975..20355980,-#_c9a360ad2e81a1d455ac2f1d9c7c382d | p@chr1:20355975..20355980, - |
| 7.78e-118 | FFCP PHASE2:Hg19::chr1:20355975..20355980,-#_c9a360ad2e81a1d455ac2f1d9c7c382d | p@chr1:20355975..20355980, - |
| 5.69e-99 | FFCP PHASE2:Hg19::chr1:237331032..237331036,+#_9c89d50734dfb153f62a49d4349742df | p@chr1:237331032..237331036, + |
| 5.69e-99 | FFCP PHASE1:Hg19::chr1:237331032..237331036,+#_9c89d50734dfb153f62a49d4349742df | p@chr1:237331032..237331036, + |
| 1.52e-87 | FFCP PHASE2:Hg19::chr2:18116344..18116353,+#_012aa305c9db55ee84d4f89ecffc7c98 | p@chr2:18116344..18116353, + |
| 1.52e-87 | FFCP PHASE2:Hg19::chr1:11907265..11907271,-#_012aa305c9db55ee84d4f89ecffc7c98 | p9@NPPA |
| 1.52e-87 | FFCP PHASE1:Hg19::chr6:6739548..6739577,-#_012aa305c9db55ee84d4f89ecffc7c98 | p@chr6:6739548..6739577, - |
| 1.52e-87 | FFCP PHASE1:Hg19::chr1:11907265..11907271,-#_012aa305c9db55ee84d4f89ecffc7c98 | p9@NPPA |
| 1.52e-87 | FFCP PHASE1:Hg19::chr2:18116344..18116353,+#_012aa305c9db55ee84d4f89ecffc7c98 | p@chr2:18116344..18116353, + |
| 1.52e-87 | FFCP PHASE2:Hg19::chr6:6739548..6739577,-#_012aa305c9db55ee84d4f89ecffc7c98 | p@chr6:6739548..6739577, - |
| 7.21e-85 | FFCP PHASE1:Hg19::chrX:112324334..112324339,-#_4745321fed781b6bf0ad3dd3ae77a41e | p@chrX:112324334..112324339, - |
| 7.21e-85 | FFCP PHASE2:Hg19::chrX:112324334..112324339,-#_4745321fed781b6bf0ad3dd3ae77a41e | p@chrX:112324334..112324339, - |
| 1.71e-84 | FFCP PHASE1:Hg19::chr2:220491902..220491915,+#_0b2c3284125264ababe4f5e498970da6 | p11@SLC4A3 |
| 1.71e-84 | FFCP PHASE2:Hg19::chr2:220491902..220491915,+#_0b2c3284125264ababe4f5e498970da6 | p11@SLC4A3 |
| 2.27e-84 | FFCP PHASE2:Hg19::chr2:179533457..179533461,-#_a632be7d87216933416297ca21150b67 | p@chr2:179533457..179533461, - |
| 2.27e-84 | FFCP PHASE1:Hg19::chr2:179533457..179533461,-#_a632be7d87216933416297ca21150b67 | p@chr2:179533457..179533461, - |
| 3.03e-84 | FFCP PHASE2:Hg19::chr2:179398102..179398109,-#_ef36abedf210c436057d9fd2eb8d54ef | p@chr2:179398102..179398109, - |
| 3.03e-84 | FFCP PHASE1:Hg19::chr2:179398102..179398109,-#_ef36abedf210c436057d9fd2eb8d54ef | p@chr2:179398102..179398109, - |
| 7.81e-75 | FFCP PHASE2:Hg19::chr5:123739302..123739319,-#_20bea104bd41e6ba48905e4f72c8eb7c | p@chr5:123739302..123739319, - |
| 7.81e-75 | FFCP PHASE1:Hg19::chr5:123739302..123739319,-#_20bea104bd41e6ba48905e4f72c8eb7c | p@chr5:123739302..123739319, - |
| 1.01e-74 | FFCP PHASE1:Hg19::chr18:64271475..64271484,-#_f0b82ec19988fed25473bb8d8642cbfd | p6@CDH19 |
| 1.01e-74 | FFCP PHASE2:Hg19::chr18:64271475..64271484,-#_f0b82ec19988fed25473bb8d8642cbfd | p6@CDH19 |
| 1.29e-74 | FFCP PHASE1:Hg19::chr7:35286774..35286778,-#_1bc8cef6a014d443f2c705b7ef26e72c | p@chr7:35286774..35286778, - |
| 1.29e-74 | FFCP PHASE2:Hg19::chr7:35286774..35286778,-#_1bc8cef6a014d443f2c705b7ef26e72c | p@chr7:35286774..35286778, - |
| 1.66e-74 | FFCP PHASE1:Hg19::chr6:129355052..129355056,+#_73e0a379cc6886220ae179733e6cbf92 | p@chr6:129355052..129355056, + |
| 1.66e-74 | FFCP PHASE2:Hg19::chr6:129355052..129355056,+#_73e0a379cc6886220ae179733e6cbf92 | p@chr6:129355052..129355056, + |
| 2.75e-74 | FFCP PHASE2:Hg19::chr3:16940540..16940554,+#_db447ee5bedefe899340093f494e3a6f | p@chr3:16940540..16940554, + |
| 2.75e-74 | FFCP PHASE1:Hg19::chr3:16940540..16940554,+#_db447ee5bedefe899340093f494e3a6f | p@chr3:16940540..16940554, + |
| 3.54e-74 | FFCP PHASE1:Hg19::chr1:201328779..201328797,-#_00a8a94fcdfe33d311e007e4a6bcde18 | p@chr1:201328779..201328797, - |
| 3.54e-74 | FFCP PHASE1:Hg19::chr3:131523446..131523459,-#_00a8a94fcdfe33d311e007e4a6bcde18 | p@chr3:131523446..131523459, - |
| 3.54e-74 | FFCP PHASE1:Hg19::chr20:33565465..33565475,+#_00a8a94fcdfe33d311e007e4a6bcde18 | p9@MYH7B |
| 3.54e-74 | FFCP PHASE2:Hg19::chr19:55661803..55661807,-#_00a8a94fcdfe33d311e007e4a6bcde18 | p@chr19:55661803..55661807, - |
| 3.54e-74 | FFCP PHASE1:Hg19::chr19:55661803..55661807,-#_00a8a94fcdfe33d311e007e4a6bcde18 | p@chr19:55661803..55661807, - |
| 3.54e-74 | FFCP PHASE2:Hg19::chr3:131523446..131523459,-#_00a8a94fcdfe33d311e007e4a6bcde18 | p@chr3:131523446..131523459, - |
| 3.54e-74 | FFCP PHASE2:Hg19::chr20:33565465..33565475,+#_00a8a94fcdfe33d311e007e4a6bcde18 | p9@MYH7B |
| 3.54e-74 | FFCP PHASE2:Hg19::chr1:201328779..201328797,-#_00a8a94fcdfe33d311e007e4a6bcde18 | p@chr1:201328779..201328797, - |
| 5.84e-74 | FFCP PHASE1:Hg19::chr6:36812121..36812130,-#_45e51361054f87d20967ec9098bbf208 | p@chr6:36812121..36812130, - |
| 5.84e-74 | FFCP PHASE2:Hg19::chr6:36812121..36812130,-#_45e51361054f87d20967ec9098bbf208 | p@chr6:36812121..36812130, - |
| 7.51e-74 | FFCP PHASE2:Hg19::chr14:105939326..105939337,+#_c0d879369b5ba03cef510d2d494b3442 | p16@CRIP2 |
| 7.51e-74 | FFCP PHASE1:Hg19::chr14:105939326..105939337,+#_c0d879369b5ba03cef510d2d494b3442 | p16@CRIP2 |
| 9.64e-74 | FFCP PHASE1:Hg19::chr1:206838422..206838456,+#_91cae0d8e8af59cd728d99086e9a9e4f | p@chr1:206838422..206838456, + |
| 9.64e-74 | FFCP PHASE2:Hg19::chr1:206838422..206838456,+#_91cae0d8e8af59cd728d99086e9a9e4f | p@chr1:206838422..206838456, + |
| 1.24e-73 | FFCP PHASE1:Hg19::chr1:231983543..231983554,-#_45583beb3bb8367a25279867827e7e7d | p@chr1:231983543..231983554, - |
| 1.24e-73 | FFCP PHASE2:Hg19::chr1:231983543..231983554,-#_45583beb3bb8367a25279867827e7e7d | p@chr1:231983543..231983554, - |
| 1.54e-66 | FFCP PHASE2:Hg19::chr1:201328328..201328343,-#_c114849f01865f65f74b1395f2b70c48 | p@chr1:201328328..201328343, - |
| 1.54e-66 | FFCP PHASE1:Hg19::chr1:201328328..201328343,-#_c114849f01865f65f74b1395f2b70c48 | p@chr1:201328328..201328343, - |
| 1.71e-66 | FFCP PHASE1:Hg19::chr1:237214095..237214115,+#_7023d580ec9407182deaaeed7470411b | p@chr1:237214095..237214115, + |
| 1.71e-66 | FFCP PHASE1:Hg19::chr11:47367243..47367257,-#_7023d580ec9407182deaaeed7470411b | p@chr11:47367243..47367257, - |
| 1.71e-66 | FFCP PHASE2:Hg19::chr11:47367243..47367257,-#_7023d580ec9407182deaaeed7470411b | p@chr11:47367243..47367257, - |
| 1.71e-66 | FFCP PHASE2:Hg19::chr1:237214095..237214115,+#_7023d580ec9407182deaaeed7470411b | p@chr1:237214095..237214115, + |
| 2.39e-66 | FFCP PHASE2:Hg19::chr15:86272097..86272099,+#_143f5505e254bb49505ca32a80b26d3d | p@chr15:86272097..86272099, + |
| 2.39e-66 | FFCP PHASE1:Hg19::chr15:86272097..86272099,+#_143f5505e254bb49505ca32a80b26d3d | p@chr15:86272097..86272099, + |
| 2.39e-66 | FFCP PHASE2:Hg19::chr10:92678409..92678410,-#_143f5505e254bb49505ca32a80b26d3d | p@chr10:92678409..92678410, - |
| 2.39e-66 | FFCP PHASE1:Hg19::chr5:99390735..99390743,-#_143f5505e254bb49505ca32a80b26d3d | p@chr5:99390735..99390743, - |
| 2.39e-66 | FFCP PHASE1:Hg19::chr10:92678409..92678410,-#_143f5505e254bb49505ca32a80b26d3d | p@chr10:92678409..92678410, - |
| 2.39e-66 | FFCP PHASE2:Hg19::chr5:99390735..99390743,-#_143f5505e254bb49505ca32a80b26d3d | p@chr5:99390735..99390743, - |
| 2.4e-66 | FFCP PHASE1:Hg19::chr12:114886577..114886589,-#_4ef03d95d2ff29e0a365aacc21bf6ce4 | p@chr12:114886577..114886589, - |
| 2.4e-66 | FFCP PHASE1:Hg19::chr1:237996521..237996532,+#_4ef03d95d2ff29e0a365aacc21bf6ce4 | p@chr1:237996521..237996532, + |
| 2.4e-66 | FFCP PHASE2:Hg19::chr12:114886577..114886589,-#_4ef03d95d2ff29e0a365aacc21bf6ce4 | p@chr12:114886577..114886589, - |
| 2.4e-66 | FFCP PHASE2:Hg19::chr2:159976509..159976519,+#_4ef03d95d2ff29e0a365aacc21bf6ce4 | p@chr2:159976509..159976519, + |
| 2.4e-66 | FFCP PHASE1:Hg19::chr12:4735761..4735787,-#_4ef03d95d2ff29e0a365aacc21bf6ce4 | p@chr12:4735761..4735787, - |
| 2.4e-66 | FFCP PHASE2:Hg19::chr12:4735761..4735787,-#_4ef03d95d2ff29e0a365aacc21bf6ce4 | p@chr12:4735761..4735787, - |
| 2.4e-66 | FFCP PHASE1:Hg19::chr2:159976509..159976519,+#_4ef03d95d2ff29e0a365aacc21bf6ce4 | p@chr2:159976509..159976519, + |
| 2.4e-66 | FFCP PHASE2:Hg19::chr1:237996521..237996532,+#_4ef03d95d2ff29e0a365aacc21bf6ce4 | p@chr1:237996521..237996532, + |
| 2.41e-66 | FFCP PHASE2:Hg19::chr1:237207955..237207959,+#_550a3e0f4d59bd8bf8a8e4753d84075a | p@chr1:237207955..237207959, + |
| 2.41e-66 | FFCP PHASE1:Hg19::chr1:237207955..237207959,+#_550a3e0f4d59bd8bf8a8e4753d84075a | p@chr1:237207955..237207959, + |
| 2.41e-66 | FFCP PHASE1:Hg19::chr2:40480968..40480972,-#_550a3e0f4d59bd8bf8a8e4753d84075a | p@chr2:40480968..40480972, - |
| 2.41e-66 | FFCP PHASE2:Hg19::chr2:40480968..40480972,-#_550a3e0f4d59bd8bf8a8e4753d84075a | p@chr2:40480968..40480972, - |
| 3.01e-66 | FFCP PHASE1:Hg19::chr4:62999501..62999517,+#_a0c877e77078cb991da5b2aa92ad2530 | p@chr4:62999501..62999517, + |
| 3.01e-66 | FFCP PHASE2:Hg19::chr4:62999501..62999517,+#_a0c877e77078cb991da5b2aa92ad2530 | p@chr4:62999501..62999517, + |
| 3.35e-66 | FFCP PHASE2:Hg19::chr7:35253487..35253489,-#_6515379f42ac9a7a3613dec6c0a3925f | p@chr7:35253487..35253489, - |
| 3.35e-66 | FFCP PHASE2:Hg19::chr1:11905830..11905839,-#_6515379f42ac9a7a3613dec6c0a3925f | p@chr1:11905830..11905839, - |
| 3.35e-66 | FFCP PHASE2:Hg19::chr9:38650254..38650266,+#_6515379f42ac9a7a3613dec6c0a3925f | p@chr9:38650254..38650266, + |
| 3.35e-66 | FFCP PHASE1:Hg19::chr7:44179972..44179982,-#_6515379f42ac9a7a3613dec6c0a3925f | p2@MYL7 |
| 3.35e-66 | FFCP PHASE2:Hg19::chr7:44178491..44178498,-#_6515379f42ac9a7a3613dec6c0a3925f | p@chr7:44178491..44178498, - |
| 3.35e-66 | FFCP PHASE1:Hg19::chr5:65736120..65736128,-#_6515379f42ac9a7a3613dec6c0a3925f | p@chr5:65736120..65736128, - |
| 3.35e-66 | FFCP PHASE1:Hg19::chr1:11905830..11905839,-#_6515379f42ac9a7a3613dec6c0a3925f | p@chr1:11905830..11905839, - |
| 3.35e-66 | FFCP PHASE1:Hg19::chr7:35253487..35253489,-#_6515379f42ac9a7a3613dec6c0a3925f | p@chr7:35253487..35253489, - |
| 3.35e-66 | FFCP PHASE2:Hg19::chr7:44179972..44179982,-#_6515379f42ac9a7a3613dec6c0a3925f | p2@MYL7 |
| 3.35e-66 | FFCP PHASE1:Hg19::chr9:38650254..38650266,+#_6515379f42ac9a7a3613dec6c0a3925f | p@chr9:38650254..38650266, + |
| 3.35e-66 | FFCP PHASE2:Hg19::chr5:65736120..65736128,-#_6515379f42ac9a7a3613dec6c0a3925f | p@chr5:65736120..65736128, - |
| 3.35e-66 | FFCP PHASE1:Hg19::chr7:44178491..44178498,-#_6515379f42ac9a7a3613dec6c0a3925f | p@chr7:44178491..44178498, - |
| 4.68e-66 | FFCP PHASE2:Hg19::chr10:112524543..112524547,+#_8b4c4ab381a444b7d40f04f52bd9d844 | p@chr10:112524543..112524547, + |
| 4.68e-66 | FFCP PHASE2:Hg19::chr7:44180643..44180652,-#_8b4c4ab381a444b7d40f04f52bd9d844 | p3@MYL7 |
| 4.68e-66 | FFCP PHASE1:Hg19::chr10:112524543..112524547,+#_8b4c4ab381a444b7d40f04f52bd9d844 | p@chr10:112524543..112524547, + |
| 4.68e-66 | FFCP PHASE1:Hg19::chr7:44180643..44180652,-#_8b4c4ab381a444b7d40f04f52bd9d844 | p3@MYL7 |
| 5.88e-66 | FFCP PHASE1:Hg19::chr6:36812225..36812238,-#_ed9cca3ae049e6f9823074663748bfa5 | p@chr6:36812225..36812238, - |
| 5.88e-66 | FFCP PHASE2:Hg19::chr6:36812225..36812238,-#_ed9cca3ae049e6f9823074663748bfa5 | p@chr6:36812225..36812238, - |
| 6.53e-66 | FFCP PHASE2:Hg19::chr4:62999459..62999462,+#_16dcfa8d34cc5782d5790de64aa78291 | p@chr4:62999459..62999462, + |
| 6.53e-66 | FFCP PHASE1:Hg19::chr2:168104544..168104551,+#_16dcfa8d34cc5782d5790de64aa78291 | p52@XIRP2 |
| 6.53e-66 | FFCP PHASE2:Hg19::chr2:168104544..168104551,+#_16dcfa8d34cc5782d5790de64aa78291 | p52@XIRP2 |
| 6.53e-66 | FFCP PHASE1:Hg19::chr4:62999459..62999462,+#_16dcfa8d34cc5782d5790de64aa78291 | p@chr4:62999459..62999462, + |
| 1.15e-65 | FFCP PHASE1:Hg19::chr7:123302841..123302854,+#_1d520b1fe38be1b16944dcf85b2def98 | p@chr7:123302841..123302854, + |
| 1.15e-65 | FFCP PHASE1:Hg19::chr10:127569398..127569410,-#_1d520b1fe38be1b16944dcf85b2def98 | p5@DHX32 |
| 1.15e-65 | FFCP PHASE1:Hg19::chrX:121555838..121555874,+#_1d520b1fe38be1b16944dcf85b2def98 | p@chrX:121555838..121555874, + |
| 1.15e-65 | FFCP PHASE2:Hg19::chr7:123302841..123302854,+#_1d520b1fe38be1b16944dcf85b2def98 | p@chr7:123302841..123302854, + |
Property "Property value" (as page type) with input value "UBPROP:0000001 "Layer that lines the lumen of the heart.[TAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process., Property "Property value" (as page type) with input value "UBPROP:0000001 "Part of the heart comprised of thin serous membrane, composed of endothelial tissue, that lines the interior of the heart.[AAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
