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{{UBERON
{{UBERON
|id=UBERON:0007123
|alt_id=UBERON:0005715
|name=pharyngeal pouch 2
|namespace=
|def="The second pouch between the second and third arches. Contributes to the middle ear, epithelial lining of Crypts (spaces) of the palatine tonsils, supplied by the facial nerve[WP]" [PMID:16313389, Wikipedia:Pharyngeal_pouch_(embryology)#Second_pouch]
|xref=AAO:0011115;;EFO:0003633;;EHDAA2:0000061;;EMAPA:16275;;ncithesaurus:Second_Pharyngeal_Pouch;;RETIRED_EHDAA2:0000060;;SCTID:345349000;;TAO:0001130;;VHOG:0000967;;XAO:0000247;;ZFA:0001130
|is_a=UBERON:0004117
|synonym="2nd arch branchial pouch" EXACT [RETIRED_EHDAA2:0000060];;"2nd arch branchial pouch endoderm" EXACT [EHDAA2:0000061];;"pharyngeal pouches 2" EXACT PLURAL [ZFA:0001130];;"second arch pharyngeal pouch" EXACT [OBOL:automatic];;"second visceral pouch" EXACT [XAO:0000247];;"visceral pouch 2" EXACT [XAO:0000247]
|comment=
|comment=
|alt_id=UBERON:0005715
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="The second pouch between the second and third arches. Contributes to the middle ear, epithelial lining of Crypts (spaces) of the palatine tonsils, supplied by the facial nerve[WP]" [PMID:16313389, Wikipedia:Pharyngeal_pouch_(embryology)#Second_pouch]
|subset=vertebrate_core
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0007123
|is_a=UBERON:0004117
|is_obsolete=
|located_in=
|located_in=
|name=pharyngeal pouch 2
|namespace=
|obo_creation_date=
|part_of=
|part_of=
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl;;UBPROP:0000001 "Second of the pharyngeal (endodermal) evaginations between the visceral arches from which the Eustachian tube is derived; pouches 2-4 open as gill slits.[AAO]" xsd:string
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl;;UBPROP:0000001 "Second of the pharyngeal (endodermal) evaginations between the visceral arches from which the Eustachian tube is derived; pouches 2-4 open as gill slits.[AAO]" xsd:string
|is_obsolete=
|subset=vertebrate_core
|preceded_by=
|synonym="2nd arch branchial pouch" EXACT [RETIRED_EHDAA2:0000060];;"2nd arch branchial pouch endoderm" EXACT [EHDAA2:0000061];;"pharyngeal pouches 2" EXACT PLURAL [ZFA:0001130];;"second arch pharyngeal pouch" EXACT [OBOL:automatic];;"second visceral pouch" EXACT [XAO:0000247];;"visceral pouch 2" EXACT [XAO:0000247]
|union_of=
|xref=AAO:0011115;;EFO:0003633;;EHDAA2:0000061;;EMAPA:16275;;ncithesaurus:Second_Pharyngeal_Pouch;;RETIRED_EHDAA2:0000060;;SCTID:345349000;;TAO:0001130;;VHOG:0000967;;XAO:0000247;;ZFA:0001130
}}
}}

Revision as of 11:42, 12 September 2014

Name:pharyngeal pouch 2
Definition:"The second pouch between the second and third arches. Contributes to the middle ear, epithelial lining of Crypts (spaces) of the palatine tonsils, supplied by the facial nerve[WP]" [PMID:16313389, Wikipedia:Pharyngeal_pouch_(embryology)#Second_pouch]
Xrefs:
links:

AAO:0011115
EFO:0003633
EHDAA2:0000061
EMAPA:16275
ncithesaurus:Second_Pharyngeal_Pouch
RETIRED_EHDAA2:0000060
SCTID:345349000
TAO:0001130
VHOG:0000967
XAO:0000247

ZFA:0001130
Synonyms: "2nd arch branchial pouch" EXACT [RETIRED_EHDAA2:0000060]
"2nd arch branchial pouch endoderm" EXACT [EHDAA2:0000061]
"pharyngeal pouches 2" EXACT PLURAL [ZFA:0001130]
"second arch pharyngeal pouch" EXACT [OBOL:automatic]
"second visceral pouch" EXACT [XAO:0000247]
"visceral pouch 2" EXACT [XAO:0000247]
Alt_id: UBERON:0005715
Subset: vertebrate_core

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0004117(pharyngeal pouch)



Children

develops from:UBERON:0003091 (thyroid primordium)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology



Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0007123 (pharyngeal pouch 2), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
7.76e-118FFCP PHASE2:Hg19::chr8:11333461..11333472,-#_f03b86f4e725aad6a95700d7548036dap@chr8:11333461..11333472, -
7.76e-118FFCP PHASE1:Hg19::chr8:11333461..11333472,-#_f03b86f4e725aad6a95700d7548036dap@chr8:11333461..11333472, -
6.64e-89FFCP PHASE2:Hg19::chr8:11333445..11333459,-#_356d78224cc757cca03c177654641f15p@chr8:11333445..11333459, -
6.64e-89FFCP PHASE1:Hg19::chr8:11333445..11333459,-#_356d78224cc757cca03c177654641f15p@chr8:11333445..11333459, -
3.18e-79FFCP PHASE1:Hg19::chr14:36645825..36645840,-#_bd69ee190bbaf061f2cbb40e5e443bc8p5@ENST00000556013
3.18e-79FFCP PHASE2:Hg19::chr14:36645825..36645840,-#_bd69ee190bbaf061f2cbb40e5e443bc8p5@ENST00000556013
3.49e-79FFCP PHASE2:Hg19::chr2:1426850..1426859,+#_20a8e25dd036699ac7e17ab087a84a3fp10@TPO
3.49e-79FFCP PHASE2:Hg19::chr8:133898904..133898911,+#_20a8e25dd036699ac7e17ab087a84a3fp@chr8:133898904..133898911, +
3.49e-79FFCP PHASE1:Hg19::chr8:133900339..133900344,-#_20a8e25dd036699ac7e17ab087a84a3fp@chr8:133900339..133900344, -
3.49e-79FFCP PHASE2:Hg19::chr8:134108463..134108470,+#_20a8e25dd036699ac7e17ab087a84a3fp@chr8:134108463..134108470, +
3.49e-79FFCP PHASE1:Hg19::chr8:133885414..133885420,-#_20a8e25dd036699ac7e17ab087a84a3fp@chr8:133885414..133885420, -
3.49e-79FFCP PHASE1:Hg19::chr15:64421903..64421920,+#_20a8e25dd036699ac7e17ab087a84a3fp@chr15:64421903..64421920, +
3.49e-79FFCP PHASE1:Hg19::chr8:133895195..133895206,+#_20a8e25dd036699ac7e17ab087a84a3fp@chr8:133895195..133895206, +
3.49e-79FFCP PHASE2:Hg19::chr7:88388628..88388669,+#_20a8e25dd036699ac7e17ab087a84a3fp6@ZNF804B
3.49e-79FFCP PHASE1:Hg19::chr8:11333494..11333497,-#_20a8e25dd036699ac7e17ab087a84a3fp@chr8:11333494..11333497, -
3.49e-79FFCP PHASE2:Hg19::chr8:133899004..133899013,-#_20a8e25dd036699ac7e17ab087a84a3fp@chr8:133899004..133899013, -
3.49e-79FFCP PHASE1:Hg19::chr8:134145732..134145736,+#_20a8e25dd036699ac7e17ab087a84a3fp27@TG
3.49e-79FFCP PHASE2:Hg19::chr8:133900339..133900344,-#_20a8e25dd036699ac7e17ab087a84a3fp@chr8:133900339..133900344, -
3.49e-79FFCP PHASE2:Hg19::chr2:1459978..1459990,-#_20a8e25dd036699ac7e17ab087a84a3fp@chr2:1459978..1459990, -
3.49e-79FFCP PHASE1:Hg19::chr8:133978809..133978829,+#_20a8e25dd036699ac7e17ab087a84a3fp@chr8:133978809..133978829, +
3.49e-79FFCP PHASE2:Hg19::chr8:133906083..133906088,+#_20a8e25dd036699ac7e17ab087a84a3fp@chr8:133906083..133906088, +
3.49e-79FFCP PHASE2:Hg19::chr2:1440089..1440096,+#_20a8e25dd036699ac7e17ab087a84a3fp@chr2:1440089..1440096, +
3.49e-79FFCP PHASE1:Hg19::chr8:133898904..133898911,+#_20a8e25dd036699ac7e17ab087a84a3fp@chr8:133898904..133898911, +
3.49e-79FFCP PHASE1:Hg19::chr8:134108463..134108470,+#_20a8e25dd036699ac7e17ab087a84a3fp@chr8:134108463..134108470, +
3.49e-79FFCP PHASE2:Hg19::chr6:148533199..148533206,+#_20a8e25dd036699ac7e17ab087a84a3fp@chr6:148533199..148533206, +
3.49e-79FFCP PHASE1:Hg19::chr2:1426850..1426859,+#_20a8e25dd036699ac7e17ab087a84a3fp10@TPO
3.49e-79FFCP PHASE2:Hg19::chr8:133935716..133935719,+#_20a8e25dd036699ac7e17ab087a84a3fp@chr8:133935716..133935719, +
3.49e-79FFCP PHASE1:Hg19::chr7:88388628..88388669,+#_20a8e25dd036699ac7e17ab087a84a3fp6@ZNF804B
3.49e-79FFCP PHASE1:Hg19::chr8:133981703..133981711,+#_20a8e25dd036699ac7e17ab087a84a3fp31@TG
3.49e-79FFCP PHASE1:Hg19::chr14:21560489..21560506,-#_20a8e25dd036699ac7e17ab087a84a3fp@chr14:21560489..21560506, -
3.49e-79FFCP PHASE2:Hg19::chr8:133878995..133879011,+#_20a8e25dd036699ac7e17ab087a84a3fp32@TG
3.49e-79FFCP PHASE1:Hg19::chr2:1459978..1459990,-#_20a8e25dd036699ac7e17ab087a84a3fp@chr2:1459978..1459990, -
3.49e-79FFCP PHASE1:Hg19::chr22:31521904..31521930,+#_20a8e25dd036699ac7e17ab087a84a3fp@chr22:31521904..31521930, +
3.49e-79FFCP PHASE1:Hg19::chr8:133906083..133906088,+#_20a8e25dd036699ac7e17ab087a84a3fp@chr8:133906083..133906088, +
3.49e-79FFCP PHASE1:Hg19::chr14:67998625..67998628,-#_20a8e25dd036699ac7e17ab087a84a3fp@chr14:67998625..67998628, -
3.49e-79FFCP PHASE2:Hg19::chr8:133948038..133948045,+#_20a8e25dd036699ac7e17ab087a84a3fp@chr8:133948038..133948045, +
3.49e-79FFCP PHASE2:Hg19::chr8:133895229..133895236,-#_20a8e25dd036699ac7e17ab087a84a3fp@chr8:133895229..133895236, -
3.49e-79FFCP PHASE2:Hg19::chr7:107301340..107301345,+#_20a8e25dd036699ac7e17ab087a84a3fp13@SLC26A4
3.49e-79FFCP PHASE2:Hg19::chr2:134788828..134788834,-#_20a8e25dd036699ac7e17ab087a84a3fp@chr2:134788828..134788834, -
3.49e-79FFCP PHASE1:Hg19::chr6:148533199..148533206,+#_20a8e25dd036699ac7e17ab087a84a3fp@chr6:148533199..148533206, +
3.49e-79FFCP PHASE2:Hg19::chr8:133981703..133981711,+#_20a8e25dd036699ac7e17ab087a84a3fp31@TG
3.49e-79FFCP PHASE1:Hg19::chr2:1440089..1440096,+#_20a8e25dd036699ac7e17ab087a84a3fp@chr2:1440089..1440096, +
3.49e-79FFCP PHASE2:Hg19::chr22:31521904..31521930,+#_20a8e25dd036699ac7e17ab087a84a3fp@chr22:31521904..31521930, +
3.49e-79FFCP PHASE1:Hg19::chr8:133878995..133879011,+#_20a8e25dd036699ac7e17ab087a84a3fp32@TG
3.49e-79FFCP PHASE1:Hg19::chr8:133935716..133935719,+#_20a8e25dd036699ac7e17ab087a84a3fp@chr8:133935716..133935719, +
3.49e-79FFCP PHASE1:Hg19::chr8:133900347..133900354,-#_20a8e25dd036699ac7e17ab087a84a3fp@chr8:133900347..133900354, -
3.49e-79FFCP PHASE1:Hg19::chr8:133948038..133948045,+#_20a8e25dd036699ac7e17ab087a84a3fp@chr8:133948038..133948045, +
3.49e-79FFCP PHASE1:Hg19::chr8:133895229..133895236,-#_20a8e25dd036699ac7e17ab087a84a3fp@chr8:133895229..133895236, -
3.49e-79FFCP PHASE1:Hg19::chr7:107301340..107301345,+#_20a8e25dd036699ac7e17ab087a84a3fp13@SLC26A4
3.49e-79FFCP PHASE2:Hg19::chr8:133898763..133898768,-#_20a8e25dd036699ac7e17ab087a84a3fp@chr8:133898763..133898768, -
3.49e-79FFCP PHASE1:Hg19::chr9:100615454..100615457,-#_20a8e25dd036699ac7e17ab087a84a3fp@chr9:100615454..100615457, -
3.49e-79FFCP PHASE1:Hg19::chr2:134788828..134788834,-#_20a8e25dd036699ac7e17ab087a84a3fp@chr2:134788828..134788834, -
3.49e-79FFCP PHASE2:Hg19::chr2:1417344..1417367,+#_20a8e25dd036699ac7e17ab087a84a3fp@chr2:1417344..1417367, +
3.49e-79FFCP PHASE2:Hg19::chr8:133900347..133900354,-#_20a8e25dd036699ac7e17ab087a84a3fp@chr8:133900347..133900354, -
3.49e-79FFCP PHASE2:Hg19::chr8:133883693..133883699,-#_20a8e25dd036699ac7e17ab087a84a3fp@chr8:133883693..133883699, -
3.49e-79FFCP PHASE2:Hg19::chr8:133906121..133906132,+#_20a8e25dd036699ac7e17ab087a84a3fp@chr8:133906121..133906132, +
3.49e-79FFCP PHASE1:Hg19::chr19:20473429..20473445,+#_20a8e25dd036699ac7e17ab087a84a3fp@chr19:20473429..20473445, +
3.49e-79FFCP PHASE2:Hg19::chr8:133894753..133894756,-#_20a8e25dd036699ac7e17ab087a84a3fp@chr8:133894753..133894756, -
3.49e-79FFCP PHASE1:Hg19::chr8:133900606..133900611,+#_20a8e25dd036699ac7e17ab087a84a3fp@chr8:133900606..133900611, +
3.49e-79FFCP PHASE2:Hg19::chr9:100615454..100615457,-#_20a8e25dd036699ac7e17ab087a84a3fp@chr9:100615454..100615457, -
3.49e-79FFCP PHASE2:Hg19::chr8:134125750..134125765,+#_20a8e25dd036699ac7e17ab087a84a3fp@chr8:134125750..134125765, +
3.49e-79FFCP PHASE2:Hg19::chr19:20473429..20473445,+#_20a8e25dd036699ac7e17ab087a84a3fp@chr19:20473429..20473445, +
3.49e-79FFCP PHASE1:Hg19::chr8:133898763..133898768,-#_20a8e25dd036699ac7e17ab087a84a3fp@chr8:133898763..133898768, -
3.49e-79FFCP PHASE1:Hg19::chr8:133981720..133981727,+#_20a8e25dd036699ac7e17ab087a84a3fp21@TG
3.49e-79FFCP PHASE1:Hg19::chr9:100616714..100616732,+#_20a8e25dd036699ac7e17ab087a84a3fp@chr9:100616714..100616732, +
3.49e-79FFCP PHASE1:Hg19::chr2:1417344..1417367,+#_20a8e25dd036699ac7e17ab087a84a3fp@chr2:1417344..1417367, +
3.49e-79FFCP PHASE2:Hg19::chr8:134107312..134107315,+#_20a8e25dd036699ac7e17ab087a84a3fp46@TG
3.49e-79FFCP PHASE2:Hg19::chr8:133900606..133900611,+#_20a8e25dd036699ac7e17ab087a84a3fp@chr8:133900606..133900611, +
3.49e-79FFCP PHASE2:Hg19::chr8:133885307..133885312,+#_20a8e25dd036699ac7e17ab087a84a3fp@chr8:133885307..133885312, +
3.49e-79FFCP PHASE1:Hg19::chr8:133906121..133906132,+#_20a8e25dd036699ac7e17ab087a84a3fp@chr8:133906121..133906132, +
3.49e-79FFCP PHASE2:Hg19::chr7:107301406..107301418,+#_20a8e25dd036699ac7e17ab087a84a3fp5@SLC26A4
3.49e-79FFCP PHASE1:Hg19::chr8:133883693..133883699,-#_20a8e25dd036699ac7e17ab087a84a3fp@chr8:133883693..133883699, -
3.49e-79FFCP PHASE1:Hg19::chr8:133894753..133894756,-#_20a8e25dd036699ac7e17ab087a84a3fp@chr8:133894753..133894756, -
3.49e-79FFCP PHASE2:Hg19::chr2:1457477..1457487,+#_20a8e25dd036699ac7e17ab087a84a3fp@chr2:1457477..1457487, +
3.49e-79FFCP PHASE2:Hg19::chr8:133895057..133895065,+#_20a8e25dd036699ac7e17ab087a84a3fp@chr8:133895057..133895065, +
3.49e-79FFCP PHASE1:Hg19::chr8:134125750..134125765,+#_20a8e25dd036699ac7e17ab087a84a3fp@chr8:134125750..134125765, +
3.49e-79FFCP PHASE2:Hg19::chr8:133981720..133981727,+#_20a8e25dd036699ac7e17ab087a84a3fp21@TG
3.49e-79FFCP PHASE2:Hg19::chr9:100616714..100616732,+#_20a8e25dd036699ac7e17ab087a84a3fp@chr9:100616714..100616732, +
3.49e-79FFCP PHASE1:Hg19::chr8:134107312..134107315,+#_20a8e25dd036699ac7e17ab087a84a3fp46@TG
3.49e-79FFCP PHASE1:Hg19::chr8:133900431..133900436,+#_20a8e25dd036699ac7e17ab087a84a3fp@chr8:133900431..133900436, +
3.49e-79FFCP PHASE2:Hg19::chr2:1417430..1417444,+#_20a8e25dd036699ac7e17ab087a84a3fp@chr2:1417430..1417444, +
3.49e-79FFCP PHASE1:Hg19::chr8:133980132..133980143,+#_20a8e25dd036699ac7e17ab087a84a3fp@chr8:133980132..133980143, +
3.49e-79FFCP PHASE1:Hg19::chr7:107301406..107301418,+#_20a8e25dd036699ac7e17ab087a84a3fp5@SLC26A4
3.49e-79FFCP PHASE1:Hg19::chr21:39644214..39644219,+#_20a8e25dd036699ac7e17ab087a84a3fp21@KCNJ15
3.49e-79FFCP PHASE2:Hg19::chr14:21560489..21560506,-#_20a8e25dd036699ac7e17ab087a84a3fp@chr14:21560489..21560506, -
3.49e-79FFCP PHASE1:Hg19::chr8:133885307..133885312,+#_20a8e25dd036699ac7e17ab087a84a3fp@chr8:133885307..133885312, +
3.49e-79FFCP PHASE2:Hg19::chr8:133900431..133900436,+#_20a8e25dd036699ac7e17ab087a84a3fp@chr8:133900431..133900436, +
3.49e-79FFCP PHASE1:Hg19::chr8:133895057..133895065,+#_20a8e25dd036699ac7e17ab087a84a3fp@chr8:133895057..133895065, +
3.49e-79FFCP PHASE2:Hg19::chr14:67998625..67998628,-#_20a8e25dd036699ac7e17ab087a84a3fp@chr14:67998625..67998628, -
3.49e-79FFCP PHASE1:Hg19::chr8:133899413..133899418,+#_20a8e25dd036699ac7e17ab087a84a3fp@chr8:133899413..133899418, +
3.49e-79FFCP PHASE1:Hg19::chr4:88047429..88047437,+#_20a8e25dd036699ac7e17ab087a84a3fp@chr4:88047429..88047437, +
3.49e-79FFCP PHASE2:Hg19::chr16:66420861..66420868,+#_20a8e25dd036699ac7e17ab087a84a3fp@chr16:66420861..66420868, +
3.49e-79FFCP PHASE1:Hg19::chr2:1457477..1457487,+#_20a8e25dd036699ac7e17ab087a84a3fp@chr2:1457477..1457487, +
3.49e-79FFCP PHASE2:Hg19::chr8:133894780..133894789,+#_20a8e25dd036699ac7e17ab087a84a3fp@chr8:133894780..133894789, +
3.49e-79FFCP PHASE2:Hg19::chr15:64421903..64421920,+#_20a8e25dd036699ac7e17ab087a84a3fp@chr15:64421903..64421920, +
3.49e-79FFCP PHASE1:Hg19::chr14:81421428..81421431,+#_20a8e25dd036699ac7e17ab087a84a3fp11@TSHR
3.49e-79FFCP PHASE2:Hg19::chr8:133980132..133980143,+#_20a8e25dd036699ac7e17ab087a84a3fp@chr8:133980132..133980143, +
3.49e-79FFCP PHASE2:Hg19::chr8:133882027..133882038,+#_20a8e25dd036699ac7e17ab087a84a3fp@chr8:133882027..133882038, +
3.49e-79FFCP PHASE2:Hg19::chr21:39644214..39644219,+#_20a8e25dd036699ac7e17ab087a84a3fp21@KCNJ15
3.49e-79FFCP PHASE2:Hg19::chr8:133961114..133961122,+#_20a8e25dd036699ac7e17ab087a84a3fp@chr8:133961114..133961122, +










Property "Property value" (as page type) with input value "UBPROP:0000001 "Second of the pharyngeal (endodermal) evaginations between the visceral arches from which the Eustachian tube is derived; pouches 2-4 open as gill slits.[AAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.

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