CL:0000515: Difference between revisions
From FANTOM5_SSTAR
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|has_quality= | |has_quality= | ||
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|part_of= | |part_of=UBERON:0001134 | ||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/cl.owl | |property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/cl.owl | ||
|is_obsolete= | |is_obsolete= | ||
|preceded_by= | |preceded_by= | ||
}} | }} | ||
Revision as of 13:01, 27 June 2012
| Name: | skeletal muscle myoblast | ||
|---|---|---|---|
| Namespace: | cell | ||
| Definition: | "A myoblast that differentiates into skeletal muscle fibers." [SANBI:mhl] | ||
| Xrefs: |
| ||
| Synonyms: | "skeletal myoblast" EXACT [] |
Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | CL:0000056(myoblast) |
|---|---|
| part_of: | UBERON:0001134(skeletal muscle tissue) |
Children
| derives from: | FF:0000164 (human skeletal muscle myoblast sample) |
|---|---|
| develops from: | CL:0002372 (myotube) |
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.
Human (Homo sapiens)
- 11241-116D8 (Myoblast, donor1)
- 11322-117D8 (Myoblast, donor2)
- 11398-118D3 (Myoblast, donor3)
Mouse (Mus musculus)
- 11241-116D8 (Myoblast, donor1)
- 11322-117D8 (Myoblast, donor2)
- 11398-118D3 (Myoblast, donor3)
Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0000515 (skeletal muscle myoblast), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 2.57e-195 | FFCP PHASE1:Hg19::chr7:7595050..7595057,-#_77522ba1d1d53c798f9edc2f2a973a07 | p@chr7:7595050..7595057, - |
| 2.57e-195 | FFCP PHASE2:Hg19::chr7:7595050..7595057,-#_77522ba1d1d53c798f9edc2f2a973a07 | p@chr7:7595050..7595057, - |
| 6.94e-147 | FFCP PHASE1:Hg19::chr18:41106373..41106378,-#_37e28d62df81e8279002975fc4ca7778 | p@chr18:41106373..41106378, - |
| 6.94e-147 | FFCP PHASE2:Hg19::chr18:41106373..41106378,-#_37e28d62df81e8279002975fc4ca7778 | p@chr18:41106373..41106378, - |
| 1.55e-98 | FFCP PHASE1:Hg19::chr1:159438711..159438719,-#_f0d0b4656ee4ea369756fdd024719026 | p1@ENST00000431862, p1@uc001fts.3 |
| 1.55e-98 | FFCP PHASE2:Hg19::chr1:159438711..159438719,-#_f0d0b4656ee4ea369756fdd024719026 | p1@ENST00000431862, p1@uc001fts.3 |
| 2.4e-66 | FFCP PHASE1:Hg19::chr2:194726831..194726836,+#_b667bf6f4685eab8633a1ea478fb233a | p@chr2:194726831..194726836, + |
| 2.4e-66 | FFCP PHASE2:Hg19::chr2:194726831..194726836,+#_b667bf6f4685eab8633a1ea478fb233a | p@chr2:194726831..194726836, + |
| 3.35e-66 | FFCP PHASE1:Hg19::chr9:113430935..113430942,+#_683aea88c66ca2d9d668cf5be4e7a32a | p5@MUSK |
| 3.35e-66 | FFCP PHASE2:Hg19::chr9:113430935..113430942,+#_683aea88c66ca2d9d668cf5be4e7a32a | p5@MUSK |
| 4.67e-66 | FFCP PHASE1:Hg19::chr6:117747000..117747010,-#_dc1c8b59778436b66986829583cbe692 | p9@ROS1 |
| 4.67e-66 | FFCP PHASE2:Hg19::chr6:117747000..117747010,-#_dc1c8b59778436b66986829583cbe692 | p9@ROS1 |
| 2.78e-63 | FFCP PHASE1:Hg19::chr7:98258032..98258045,+#_275774418f969a58f44582a3da42f94a | p@chr7:98258032..98258045, + |
| 2.78e-63 | FFCP PHASE2:Hg19::chr7:98258032..98258045,+#_275774418f969a58f44582a3da42f94a | p@chr7:98258032..98258045, + |
| 2.15e-56 | FFCP PHASE1:Hg19::chr7:45952098..45952107,-#_23a3e907c0e1cc9b7fbf8f1354339a5a | p@chr7:45952098..45952107, - |
| 2.15e-56 | FFCP PHASE2:Hg19::chr7:45952098..45952107,-#_23a3e907c0e1cc9b7fbf8f1354339a5a | p@chr7:45952098..45952107, - |
| 2.6e-56 | FFCP PHASE2:Hg19::chr10:117419477..117419497,+#_b3623ad9344958f9cacd8bddf422a0ee | p@chr10:117419477..117419497, + |
| 2.6e-56 | FFCP PHASE1:Hg19::chr10:117419477..117419497,+#_b3623ad9344958f9cacd8bddf422a0ee | p@chr10:117419477..117419497, + |
| 8.06e-56 | FFCP PHASE1:Hg19::chr2:45419385..45419401,-#_7efb53f99dd7729926016046a1222641 | p1@ENST00000427020 |
| 8.06e-56 | FFCP PHASE2:Hg19::chr2:45419385..45419401,-#_7efb53f99dd7729926016046a1222641 | p1@ENST00000427020 |
| 3.1e-50 | FFCP PHASE1:Hg19::chr1:66943898..66943900,-#_23289a7b8be86f7ebf11b1ce70960b57 | p@chr1:66943898..66943900, - |
| 3.1e-50 | FFCP PHASE2:Hg19::chr1:66943898..66943900,-#_23289a7b8be86f7ebf11b1ce70960b57 | p@chr1:66943898..66943900, - |
| 3.1e-50 | FFCP PHASE1:Hg19::chr1:159438816..159438827,-#_23289a7b8be86f7ebf11b1ce70960b57 | p2@ENST00000431862, p2@uc001fts.3 |
| 3.1e-50 | FFCP PHASE2:Hg19::chr1:159438816..159438827,-#_23289a7b8be86f7ebf11b1ce70960b57 | p2@ENST00000431862, p2@uc001fts.3 |
| 3.1e-50 | FFCP PHASE1:Hg19::chr4:70601184..70601197,-#_23289a7b8be86f7ebf11b1ce70960b57 | p@chr4:70601184..70601197, - |
| 3.1e-50 | FFCP PHASE1:Hg19::chr1:159316223..159316263,-#_23289a7b8be86f7ebf11b1ce70960b57 | p@chr1:159316223..159316263, - |
| 3.1e-50 | FFCP PHASE2:Hg19::chr1:159316223..159316263,-#_23289a7b8be86f7ebf11b1ce70960b57 | p@chr1:159316223..159316263, - |
| 3.1e-50 | FFCP PHASE2:Hg19::chr4:70601184..70601197,-#_23289a7b8be86f7ebf11b1ce70960b57 | p@chr4:70601184..70601197, - |
| 3.1e-50 | FFCP PHASE1:Hg19::chr3:62153463..62153468,+#_23289a7b8be86f7ebf11b1ce70960b57 | p@chr3:62153463..62153468, + |
| 3.1e-50 | FFCP PHASE1:Hg19::chr5:14400015..14400018,-#_23289a7b8be86f7ebf11b1ce70960b57 | p@chr5:14400015..14400018, - |
| 3.1e-50 | FFCP PHASE2:Hg19::chr5:14400015..14400018,-#_23289a7b8be86f7ebf11b1ce70960b57 | p@chr5:14400015..14400018, - |
| 3.1e-50 | FFCP PHASE2:Hg19::chr3:62153463..62153468,+#_23289a7b8be86f7ebf11b1ce70960b57 | p@chr3:62153463..62153468, + |
| 4.37e-50 | FFCP PHASE1:Hg19::chr11:19619645..19619656,+#_fbcd786dfd52c7405c7c47903da0d3a5 | p@chr11:19619645..19619656, + |
| 4.37e-50 | FFCP PHASE2:Hg19::chr11:19619645..19619656,+#_fbcd786dfd52c7405c7c47903da0d3a5 | p@chr11:19619645..19619656, + |
| 5.14e-50 | FFCP PHASE2:Hg19::chr7:7594984..7594990,-#_06f49e218b31bc381bc26dd8502156e7 | p@chr7:7594984..7594990, - |
| 5.14e-50 | FFCP PHASE2:Hg19::chr11:47470490..47470498,-#_06f49e218b31bc381bc26dd8502156e7 | p1@AB527888 |
| 5.14e-50 | FFCP PHASE2:Hg19::chr3:62153512..62153526,+#_06f49e218b31bc381bc26dd8502156e7 | p@chr3:62153512..62153526, + |
| 5.14e-50 | FFCP PHASE1:Hg19::chr4:28460761..28460765,+#_06f49e218b31bc381bc26dd8502156e7 | p@chr4:28460761..28460765, + |
| 5.14e-50 | FFCP PHASE2:Hg19::chr4:28460761..28460765,+#_06f49e218b31bc381bc26dd8502156e7 | p@chr4:28460761..28460765, + |
| 5.14e-50 | FFCP PHASE1:Hg19::chr1:78475650..78475661,+#_06f49e218b31bc381bc26dd8502156e7 | p@chr1:78475650..78475661, + |
| 5.14e-50 | FFCP PHASE2:Hg19::chr1:78475650..78475661,+#_06f49e218b31bc381bc26dd8502156e7 | p@chr1:78475650..78475661, + |
| 5.14e-50 | FFCP PHASE1:Hg19::chr11:47470490..47470498,-#_06f49e218b31bc381bc26dd8502156e7 | p1@AB527888 |
| 5.14e-50 | FFCP PHASE1:Hg19::chr3:62153512..62153526,+#_06f49e218b31bc381bc26dd8502156e7 | p@chr3:62153512..62153526, + |
| 5.14e-50 | FFCP PHASE1:Hg19::chr7:7594984..7594990,-#_06f49e218b31bc381bc26dd8502156e7 | p@chr7:7594984..7594990, - |
| 5.16e-50 | FFCP PHASE2:Hg19::chr4:177190139..177190150,-#_f827cd0eb6e1938699c48609dddc59a5 | p6@ASB5 |
| 5.16e-50 | FFCP PHASE1:Hg19::chr5:172901990..172901996,+#_f827cd0eb6e1938699c48609dddc59a5 | p@chr5:172901990..172901996, + |
| 5.16e-50 | FFCP PHASE2:Hg19::chr5:172901990..172901996,+#_f827cd0eb6e1938699c48609dddc59a5 | p@chr5:172901990..172901996, + |
| 5.16e-50 | FFCP PHASE1:Hg19::chr4:177190139..177190150,-#_f827cd0eb6e1938699c48609dddc59a5 | p6@ASB5 |
| 5.96e-45 | FFCP PHASE2:Hg19::chr11:47470591..47470604,-#_f71a4ae29cf65b896842ed7a3877967f | p4@RAPSN |
| 5.96e-45 | FFCP PHASE1:Hg19::chr11:47470591..47470604,-#_f71a4ae29cf65b896842ed7a3877967f | p4@RAPSN |
| 6.58e-45 | FFCP PHASE1:Hg19::chr8:122653259..122653278,+#_f435eb5f4aef5248e2c9273d6e57c6d4 | p4@HAS2-AS1 |
| 6.58e-45 | FFCP PHASE2:Hg19::chr8:122653259..122653278,+#_f435eb5f4aef5248e2c9273d6e57c6d4 | p4@HAS2-AS1 |
| 2.28e-42 | FFCP PHASE1:Hg19::chr11:47470657..47470674,-#_63848e8d2fe39d7da898fcde0144d80e | p2@RAPSN |
| 2.28e-42 | FFCP PHASE2:Hg19::chr11:47470657..47470674,-#_63848e8d2fe39d7da898fcde0144d80e | p2@RAPSN |
| 5.02e-41 | FFCP PHASE1:Hg19::chr5:32829061..32829092,+#_831014c8cc1512125fcd4c11a0d11cb6 | p@chr5:32829061..32829092, + |
| 5.02e-41 | FFCP PHASE2:Hg19::chr5:32829061..32829092,+#_831014c8cc1512125fcd4c11a0d11cb6 | p@chr5:32829061..32829092, + |
| 1.58e-40 | FFCP PHASE1:Hg19::chr11:17741254..17741282,+#_2b2809a8bcac62f5fe55bc1b470ee777 | p2@MYOD1 |
| 1.58e-40 | FFCP PHASE2:Hg19::chr11:17741254..17741282,+#_2b2809a8bcac62f5fe55bc1b470ee777 | p2@MYOD1 |
| 1.81e-40 | FFCP PHASE2:Hg19::chr11:19371449..19371460,+#_ed0d46de3793cc80ff92debc1d2fefff | p@chr11:19371449..19371460, + |
| 1.81e-40 | FFCP PHASE1:Hg19::chr11:19371449..19371460,+#_ed0d46de3793cc80ff92debc1d2fefff | p@chr11:19371449..19371460, + |
| 4.05e-40 | FFCP PHASE1:Hg19::chr4:28866276..28866280,+#_09ec3646f5f45a22792b3817d063db02 | p@chr4:28866276..28866280, + |
| 4.05e-40 | FFCP PHASE2:Hg19::chr4:28866276..28866280,+#_09ec3646f5f45a22792b3817d063db02 | p@chr4:28866276..28866280, + |
| 2.36e-37 | FFCP PHASE1:Hg19::chr16:31076273..31076288,-#_c12541fe5add91bb1d774cdc88b8253c | p11@ZNF668 |
| 2.36e-37 | FFCP PHASE2:Hg19::chr16:31076273..31076288,-#_c12541fe5add91bb1d774cdc88b8253c | p11@ZNF668 |
| 2.36e-35 | FFCP PHASE1:Hg19::chr1:59361566..59361570,-#_8126b9f9b2537474e794f34a7ef25f83 | p@chr1:59361566..59361570, - |
| 2.36e-35 | FFCP PHASE2:Hg19::chr1:59361566..59361570,-#_8126b9f9b2537474e794f34a7ef25f83 | p@chr1:59361566..59361570, - |
| 6.0e-35 | FFCP PHASE1:Hg19::chr12:56075553..56075558,+#_dd744594b3688d2ff5ed25f30efea0ed | p5@METTL7B |
| 6.0e-35 | FFCP PHASE2:Hg19::chr12:56075553..56075558,+#_dd744594b3688d2ff5ed25f30efea0ed | p5@METTL7B |
| 8.13e-35 | FFCP PHASE2:Hg19::chr11:47470703..47470715,-#_79c1f18d8bb2259a1f9f82808c27cc04 | p3@RAPSN |
| 8.13e-35 | FFCP PHASE1:Hg19::chr11:47470703..47470715,-#_79c1f18d8bb2259a1f9f82808c27cc04 | p3@RAPSN |
| 5.98e-34 | FFCP PHASE1:Hg19::chr16:56651531..56651554,+#_719e8b75f49ca9ae798c9ef4363ec957 | p@chr16:56651531..56651554, + |
| 5.98e-34 | FFCP PHASE2:Hg19::chr16:56651531..56651554,+#_719e8b75f49ca9ae798c9ef4363ec957 | p@chr16:56651531..56651554, + |
| 8.36e-34 | FFCP PHASE2:Hg19::chr1:78475606..78475614,+#_09d8c30b56592f11b5ea14a5a895bcde | p@chr1:78475606..78475614, + |
| 8.36e-34 | FFCP PHASE1:Hg19::chr6:117747099..117747109,-#_09d8c30b56592f11b5ea14a5a895bcde | p7@ROS1 |
| 8.36e-34 | FFCP PHASE2:Hg19::chr6:117747099..117747109,-#_09d8c30b56592f11b5ea14a5a895bcde | p7@ROS1 |
| 8.36e-34 | FFCP PHASE1:Hg19::chr1:78475606..78475614,+#_09d8c30b56592f11b5ea14a5a895bcde | p@chr1:78475606..78475614, + |
| 1.15e-33 | FFCP PHASE1:Hg19::chr16:89238212..89238224,+#_4c9468e2f2dc8bce1b1c64b3ee6bcd3a | p2@CDH15 |
| 1.15e-33 | FFCP PHASE2:Hg19::chr16:89238212..89238224,+#_4c9468e2f2dc8bce1b1c64b3ee6bcd3a | p2@CDH15 |
| 1.17e-33 | FFCP PHASE1:Hg19::chr3:30449903..30449909,+#_158e0c1009313965c7bc1c434a9411ed | p@chr3:30449903..30449909, + |
| 1.17e-33 | FFCP PHASE2:Hg19::chr3:30449903..30449909,+#_158e0c1009313965c7bc1c434a9411ed | p@chr3:30449903..30449909, + |
| 1.18e-32 | FFCP PHASE1:Hg19::chr1:242927602..242927613,-#_ecb05f9d8adf7ea6c639fe5f9d128f73 | p@chr1:242927602..242927613, - |
| 1.18e-32 | FFCP PHASE2:Hg19::chr1:242927602..242927613,-#_ecb05f9d8adf7ea6c639fe5f9d128f73 | p@chr1:242927602..242927613, - |
| 6.56e-32 | FFCP PHASE1:Hg19::chr16:89238188..89238199,+#_15f2a408537fd54629aff089f0bf89f8 | p3@CDH15 |
| 6.56e-32 | FFCP PHASE2:Hg19::chr16:89238188..89238199,+#_15f2a408537fd54629aff089f0bf89f8 | p3@CDH15 |
| 9.47e-31 | FFCP PHASE1:Hg19::chr6:94497816..94497824,+#_414b7212bd4eb20300721229c3c57190 | p@chr6:94497816..94497824, + |
| 9.47e-31 | FFCP PHASE2:Hg19::chr6:94497816..94497824,+#_414b7212bd4eb20300721229c3c57190 | p@chr6:94497816..94497824, + |
| 2.62e-30 | FFCP PHASE1:Hg19::chr11:17741084..17741094,+#_e2c706cf00ac3bfc95168ae81135a8d0 | p3@MYOD1 |
| 2.62e-30 | FFCP PHASE2:Hg19::chr11:17741084..17741094,+#_e2c706cf00ac3bfc95168ae81135a8d0 | p3@MYOD1 |
| 3.87e-30 | FFCP PHASE1:Hg19::chr11:65783268..65783279,+#_d8dbfd37d7ce3aac417a2e94b8986aa1 | p@chr11:65783268..65783279, + |
| 3.87e-30 | FFCP PHASE2:Hg19::chr11:65783268..65783279,+#_d8dbfd37d7ce3aac417a2e94b8986aa1 | p@chr11:65783268..65783279, + |
| 4.21e-29 | FFCP PHASE1:Hg19::chr3:156210737..156210741,-#_6650874e0a91f4eca3d68520227a6dfd | p@chr3:156210737..156210741, - |
| 4.21e-29 | FFCP PHASE2:Hg19::chr3:156210737..156210741,-#_6650874e0a91f4eca3d68520227a6dfd | p@chr3:156210737..156210741, - |
| 4.86e-29 | FFCP PHASE2:Hg19::chr12:81028467..81028477,+#_14984194345665c54c0ae03207d67998 | p5@PTPRQ |
| 4.86e-29 | FFCP PHASE2:Hg19::chr13:66999851..66999857,-#_14984194345665c54c0ae03207d67998 | p@chr13:66999851..66999857, - |
| 4.86e-29 | FFCP PHASE1:Hg19::chr13:66999851..66999857,-#_14984194345665c54c0ae03207d67998 | p@chr13:66999851..66999857, - |
| 4.86e-29 | FFCP PHASE1:Hg19::chr12:81028467..81028477,+#_14984194345665c54c0ae03207d67998 | p5@PTPRQ |
| 5.61e-29 | FFCP PHASE1:Hg19::chr15:40675222..40675233,+#_aa874177daf8d61e3fa67b2350b4451a | p4@C15orf23 |
| 5.61e-29 | FFCP PHASE2:Hg19::chr15:40675222..40675233,+#_aa874177daf8d61e3fa67b2350b4451a | p4@C15orf23 |
| 1.28e-27 | FFCP PHASE2:Hg19::chr11:17741111..17741124,+#_d754cdd4e65374ffc4d092ceefb603d9 | p1@MYOD1 |
| 1.28e-27 | FFCP PHASE1:Hg19::chr11:17741111..17741124,+#_d754cdd4e65374ffc4d092ceefb603d9 | p1@MYOD1 |
