CL:0000827: Difference between revisions
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|derives_from= | |derives_from= | ||
|develops_from= | |develops_from=CL:0000051 | ||
|has_quality= | |has_quality= | ||
|located_in= | |located_in= | ||
Revision as of 13:02, 27 June 2012
| Name: | pro-T cell |
|---|---|
| Namespace: | cell;;efo |
| Definition: | "A lymphoid progenitor cell of the T cell lineage, with some lineage specific marker expression, but not yet fully committed to the T cell lineage." [GOC:add, ISBN:0781735149] |
| Synonyms: |
"DN1 cell" NARROW [] "DN1 thymocyte" NARROW [] "pro-T lymphocyte" EXACT [] "progenitor T cell" EXACT [] "TN1 cell" NARROW [] |
Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | CL:0000838(lymphoid lineage restricted progenitor cell) |
|---|---|
| develops_from: | CL:0000051(common lymphoid progenitor) |
Children
| is a: | CL:0000894 (DN1 thymic pro-T cell),CL:0002425 (early T lineage precursor) |
|---|---|
| develops from: | CL:0000084 (T cell) |
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.
Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0000827 (pro-T cell), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 2.9e-89 | FFCP PHASE2:Hg19::chr5:35859622..35859626,+#_adb51b052a854ef1fb8a456f26f79061 | p@chr5:35859622..35859626, + |
| 2.9e-89 | FFCP PHASE1:Hg19::chr5:35859622..35859626,+#_adb51b052a854ef1fb8a456f26f79061 | p@chr5:35859622..35859626, + |
| 1.02e-73 | FFCP PHASE1:Mm9::chr4:63522330..63522352,-#_a3ce6c48cad2ee1a015d5214c035444f | p4@Tnfsf8 |
| 1.02e-73 | FFCP PHASE2:Mm9::chr4:63522330..63522352,-#_a3ce6c48cad2ee1a015d5214c035444f | p4@Tnfsf8 |
| 1.33e-72 | FFCP PHASE2:Hg19::chr2:87053288..87053295,-#_cb24ec96fa732cdbe20000e6cab7867b | p@chr2:87053288..87053295, - |
| 1.33e-72 | FFCP PHASE1:Hg19::chr2:87053288..87053295,-#_cb24ec96fa732cdbe20000e6cab7867b | p@chr2:87053288..87053295, - |
| 1.48e-71 | FFCP PHASE2:Hg19::chr17:80085772..80085810,-#_fb6be7bcc71e4821e6d986bdb68eae3d | p@chr17:80085772..80085810, - |
| 1.48e-71 | FFCP PHASE1:Hg19::chr17:80085772..80085810,-#_fb6be7bcc71e4821e6d986bdb68eae3d | p@chr17:80085772..80085810, - |
| 6.78e-71 | FFCP PHASE1:Mm9::chr4:151490126..151490137,+#_64dd6a29b5385c7fb135c5ade1c873c9 | p3@Tnfrsf25 |
| 6.78e-71 | FFCP PHASE1:Mm9::chr6:48637679..48637692,+#_64dd6a29b5385c7fb135c5ade1c873c9 | p@chr6:48637679..48637692, + |
| 6.78e-71 | FFCP PHASE1:Mm9::chr14:54150421..54150439,+#_64dd6a29b5385c7fb135c5ade1c873c9 | p1@uc007tsm.1 |
| 6.78e-71 | FFCP PHASE2:Mm9::chr19:10869146..10869168,-#_64dd6a29b5385c7fb135c5ade1c873c9 | p@chr19:10869146..10869168, - |
| 6.78e-71 | FFCP PHASE2:Mm9::chr14:54831123..54831141,+#_64dd6a29b5385c7fb135c5ade1c873c9 | p1@ENSMUST00000103733 |
| 6.78e-71 | FFCP PHASE2:Mm9::chr6:48637679..48637692,+#_64dd6a29b5385c7fb135c5ade1c873c9 | p@chr6:48637679..48637692, + |
| 6.78e-71 | FFCP PHASE1:Mm9::chr11:99015330..99015341,-#_64dd6a29b5385c7fb135c5ade1c873c9 | p@chr11:99015330..99015341, - |
| 6.78e-71 | FFCP PHASE2:Mm9::chr14:54150421..54150439,+#_64dd6a29b5385c7fb135c5ade1c873c9 | p1@uc007tsm.1 |
| 6.78e-71 | FFCP PHASE1:Mm9::chr19:10869146..10869168,-#_64dd6a29b5385c7fb135c5ade1c873c9 | p@chr19:10869146..10869168, - |
| 6.78e-71 | FFCP PHASE1:Mm9::chr14:54831123..54831141,+#_64dd6a29b5385c7fb135c5ade1c873c9 | p1@ENSMUST00000103733 |
| 6.78e-71 | FFCP PHASE1:Mm9::chr4:32339511..32339518,+#_64dd6a29b5385c7fb135c5ade1c873c9 | p@chr4:32339511..32339518, + |
| 6.78e-71 | FFCP PHASE1:Mm9::chr11:11590836..11590851,+#_64dd6a29b5385c7fb135c5ade1c873c9 | p@chr11:11590836..11590851, + |
| 6.78e-71 | FFCP PHASE2:Mm9::chr11:99015330..99015341,-#_64dd6a29b5385c7fb135c5ade1c873c9 | p@chr11:99015330..99015341, - |
| 6.78e-71 | FFCP PHASE2:Mm9::chr11:11590836..11590851,+#_64dd6a29b5385c7fb135c5ade1c873c9 | p@chr11:11590836..11590851, + |
| 6.78e-71 | FFCP PHASE2:Mm9::chr4:151490126..151490137,+#_64dd6a29b5385c7fb135c5ade1c873c9 | p3@Tnfrsf25 |
| 6.78e-71 | FFCP PHASE2:Mm9::chr4:32339511..32339518,+#_64dd6a29b5385c7fb135c5ade1c873c9 | p@chr4:32339511..32339518, + |
| 2.06e-70 | FFCP PHASE1:Hg19::chr11:118186681..118186704,-#_70112fb2700887119becbe317db69bfb | p1@CU690625 |
| 2.06e-70 | FFCP PHASE2:Hg19::chr11:118186681..118186704,-#_70112fb2700887119becbe317db69bfb | p1@CU690625 |
| 1.31e-69 | FFCP PHASE2:Hg19::chr2:38830433..38830444,-#_47ac8f7499513d1f2ca32bbe5afd2368 | p10@HNRPLL |
| 1.31e-69 | FFCP PHASE1:Hg19::chr2:38830433..38830444,-#_47ac8f7499513d1f2ca32bbe5afd2368 | p10@HNRPLL |
| 6.71e-69 | FFCP PHASE2:Hg19::chr17:29637535..29637559,+#_b96f39e8be57d0d0654e63a3b13a3fc3 | p@chr17:29637535..29637559, + |
| 6.71e-69 | FFCP PHASE1:Hg19::chr17:29637535..29637559,+#_b96f39e8be57d0d0654e63a3b13a3fc3 | p@chr17:29637535..29637559, + |
| 7.62e-69 | FFCP PHASE2:Mm9::chr4:63521957..63521980,-#_5763e780363e408c77e5fc0a2689d863 | p@chr4:63521957..63521980, - |
| 7.62e-69 | FFCP PHASE1:Mm9::chr4:63521957..63521980,-#_5763e780363e408c77e5fc0a2689d863 | p@chr4:63521957..63521980, - |
| 2.06e-68 | FFCP PHASE2:Hg19::chr15:89179440..89179457,-#_ace75de5ff561bc8585e44c48d572e7e | p@chr15:89179440..89179457, - |
| 2.06e-68 | FFCP PHASE1:Hg19::chr15:89179440..89179457,-#_ace75de5ff561bc8585e44c48d572e7e | p@chr15:89179440..89179457, - |
| 2.88e-67 | FFCP PHASE2:Hg19::chr5:35854487..35854499,-#_b4e07e69221fd76c63a8ae8535f193fb | p@chr5:35854487..35854499, - |
| 2.88e-67 | FFCP PHASE1:Hg19::chr5:35854487..35854499,-#_b4e07e69221fd76c63a8ae8535f193fb | p@chr5:35854487..35854499, - |
| 6.74e-66 | FFCP PHASE1:Mm9::chr4:32335511..32335532,+#_c0173b33e6bcc6dc80456cd0f02cb387 | p@chr4:32335511..32335532, + |
| 6.74e-66 | FFCP PHASE2:Mm9::chr4:32335511..32335532,+#_c0173b33e6bcc6dc80456cd0f02cb387 | p@chr4:32335511..32335532, + |
| 9.47e-66 | FFCP PHASE1:Hg19::chr5:35854779..35854826,+#_6a8049a32e35dd98ff12f18e40bb90aa | p@chr5:35854779..35854826, + |
| 9.47e-66 | FFCP PHASE2:Hg19::chr5:35854779..35854826,+#_6a8049a32e35dd98ff12f18e40bb90aa | p@chr5:35854779..35854826, + |
| 1.04e-65 | FFCP PHASE2:Hg19::chr4:103551892..103551903,-#_62fc962d86daf2e536dc295af3625958 | p@chr4:103551892..103551903, - |
| 1.04e-65 | FFCP PHASE1:Hg19::chr4:103551892..103551903,-#_62fc962d86daf2e536dc295af3625958 | p@chr4:103551892..103551903, - |
| 3.53e-65 | FFCP PHASE2:Hg19::chr16:3117688..3117736,+#_96a9b5563fd98fe8e9ba179f6e115bbb | p7@IL32 |
| 3.53e-65 | FFCP PHASE1:Hg19::chr16:3117688..3117736,+#_96a9b5563fd98fe8e9ba179f6e115bbb | p7@IL32 |
| 7.34e-65 | FFCP PHASE1:Hg19::chr1:90075464..90075470,-#_239ddf57e73507176379196c37ec606c | p@chr1:90075464..90075470, - |
| 7.34e-65 | FFCP PHASE2:Hg19::chr1:90075464..90075470,-#_239ddf57e73507176379196c37ec606c | p@chr1:90075464..90075470, - |
| 1.94e-64 | FFCP PHASE2:Mm9::chr6:129225479..129225509,+#_4c45e4a7d12a7cf68591536dc941a3a3 | p@chr6:129225479..129225509, + |
| 1.94e-64 | FFCP PHASE1:Mm9::chr6:129225479..129225509,+#_4c45e4a7d12a7cf68591536dc941a3a3 | p@chr6:129225479..129225509, + |
| 3.0e-64 | FFCP PHASE2:Hg19::chr18:68318174..68318193,-#_353aa8e9b54bbcc7c6b94126535e0722 | p1@GTSCR1 |
| 3.0e-64 | FFCP PHASE1:Hg19::chr18:68318174..68318193,-#_353aa8e9b54bbcc7c6b94126535e0722 | p1@GTSCR1 |
| 3.36e-64 | FFCP PHASE2:Mm9::chr4:63522312..63522327,-#_c36f261663c074616f706e247f3a3a39 | p3@Tnfsf8 |
| 3.36e-64 | FFCP PHASE1:Mm9::chr4:63522312..63522327,-#_c36f261663c074616f706e247f3a3a39 | p3@Tnfsf8 |
| 3.94e-64 | FFCP PHASE1:Hg19::chr1:32716843..32716848,+#_ab28c98492b17d5f9799b996957e4706 | p6@LCK |
| 3.94e-64 | FFCP PHASE2:Hg19::chr1:32716843..32716848,+#_ab28c98492b17d5f9799b996957e4706 | p6@LCK |
| 4.15e-64 | FFCP PHASE2:Mm9::chr14:54811976..54811990,+#_54c664ddd2278fe2d289903699bd924d | p1@ENSMUST00000103714 |
| 4.15e-64 | FFCP PHASE2:Mm9::chr12:74704873..74704900,+#_54c664ddd2278fe2d289903699bd924d | p@chr12:74704873..74704900, + |
| 4.15e-64 | FFCP PHASE2:Mm9::chr14:56207154..56207165,-#_54c664ddd2278fe2d289903699bd924d | p@chr14:56207154..56207165, - |
| 4.15e-64 | FFCP PHASE1:Mm9::chr7:31935025..31935037,+#_54c664ddd2278fe2d289903699bd924d | p@chr7:31935025..31935037, + |
| 4.15e-64 | FFCP PHASE1:Mm9::chr14:54811976..54811990,+#_54c664ddd2278fe2d289903699bd924d | p1@ENSMUST00000103714 |
| 4.15e-64 | FFCP PHASE1:Mm9::chr8:84082784..84082795,+#_54c664ddd2278fe2d289903699bd924d | p@chr8:84082784..84082795, + |
| 4.15e-64 | FFCP PHASE2:Mm9::chr7:31935025..31935037,+#_54c664ddd2278fe2d289903699bd924d | p@chr7:31935025..31935037, + |
| 4.15e-64 | FFCP PHASE1:Mm9::chr12:74704873..74704900,+#_54c664ddd2278fe2d289903699bd924d | p@chr12:74704873..74704900, + |
| 4.15e-64 | FFCP PHASE1:Mm9::chr5:123440486..123440504,-#_54c664ddd2278fe2d289903699bd924d | p@chr5:123440486..123440504, - |
| 4.15e-64 | FFCP PHASE2:Mm9::chr8:84082784..84082795,+#_54c664ddd2278fe2d289903699bd924d | p@chr8:84082784..84082795, + |
| 4.15e-64 | FFCP PHASE2:Mm9::chr5:123440486..123440504,-#_54c664ddd2278fe2d289903699bd924d | p@chr5:123440486..123440504, - |
| 4.15e-64 | FFCP PHASE1:Mm9::chr14:56207154..56207165,-#_54c664ddd2278fe2d289903699bd924d | p@chr14:56207154..56207165, - |
| 4.17e-64 | FFCP PHASE2:Hg19::chr5:35856882..35856909,-#_0201670519fc76de4196288b2fd1e09d | p@chr5:35856882..35856909, - |
| 4.17e-64 | FFCP PHASE1:Hg19::chr5:35856882..35856909,-#_0201670519fc76de4196288b2fd1e09d | p@chr5:35856882..35856909, - |
| 4.91e-64 | FFCP PHASE2:Mm9::chr5:123440767..123440778,+#_8ce822260c81ab134727451546839a23 | p@chr5:123440767..123440778, + |
| 4.91e-64 | FFCP PHASE1:Mm9::chr4:32422919..32422935,+#_8ce822260c81ab134727451546839a23 | p@chr4:32422919..32422935, + |
| 4.91e-64 | FFCP PHASE2:Mm9::chr4:32422919..32422935,+#_8ce822260c81ab134727451546839a23 | p@chr4:32422919..32422935, + |
| 4.91e-64 | FFCP PHASE1:Mm9::chr14:54838649..54838660,+#_8ce822260c81ab134727451546839a23 | p@chr14:54838649..54838660, + |
| 4.91e-64 | FFCP PHASE1:Mm9::chr5:123440767..123440778,+#_8ce822260c81ab134727451546839a23 | p@chr5:123440767..123440778, + |
| 4.91e-64 | FFCP PHASE2:Mm9::chr14:54838649..54838660,+#_8ce822260c81ab134727451546839a23 | p@chr14:54838649..54838660, + |
| 5.81e-64 | FFCP PHASE2:Mm9::chr15:27786221..27786240,-#_b81f7a6718c858e44a590ad93b640d7c | p@chr15:27786221..27786240, - |
| 5.81e-64 | FFCP PHASE1:Mm9::chr15:27786221..27786240,-#_b81f7a6718c858e44a590ad93b640d7c | p@chr15:27786221..27786240, - |
| 5.87e-64 | FFCP PHASE2:Hg19::chr2:98330009..98330020,+#_6729d1c22c0e6f1b832bdb5d99261832 | p3@ZAP70 |
| 5.87e-64 | FFCP PHASE1:Hg19::chr2:98330009..98330020,+#_6729d1c22c0e6f1b832bdb5d99261832 | p3@ZAP70 |
| 6.87e-64 | FFCP PHASE2:Mm9::chr6:99215016..99215036,+#_f346272421f87c2775300a775f62ea29 | p@chr6:99215016..99215036, + |
| 6.87e-64 | FFCP PHASE1:Mm9::chr6:99215016..99215036,+#_f346272421f87c2775300a775f62ea29 | p@chr6:99215016..99215036, + |
| 6.87e-64 | FFCP PHASE2:Mm9::chr3:103672068..103672090,-#_f346272421f87c2775300a775f62ea29 | p@chr3:103672068..103672090, - |
| 6.87e-64 | FFCP PHASE1:Mm9::chr3:103672068..103672090,-#_f346272421f87c2775300a775f62ea29 | p@chr3:103672068..103672090, - |
| 7.69e-64 | FFCP PHASE2:Mm9::chr1:108608936..108608961,-#_7b5801703819d67c466b93fa46cfd0fd | p@chr1:108608936..108608961, - |
| 7.69e-64 | FFCP PHASE1:Mm9::chr1:108608936..108608961,-#_7b5801703819d67c466b93fa46cfd0fd | p@chr1:108608936..108608961, - |
| 8.12e-64 | FFCP PHASE2:Mm9::chr6:48634453..48634468,-#_d0fe9d1e2a5c41f0e2817b09447f6455 | p@chr6:48634453..48634468, - |
| 8.12e-64 | FFCP PHASE1:Mm9::chr6:48634453..48634468,-#_d0fe9d1e2a5c41f0e2817b09447f6455 | p@chr6:48634453..48634468, - |
| 1.13e-63 | FFCP PHASE1:Mm9::chr15:60018823..60018838,-#_ce45451467806041f9943c0f5e37de14 | p5@uc007vxz.1 |
| 1.13e-63 | FFCP PHASE2:Mm9::chr15:60018823..60018838,-#_ce45451467806041f9943c0f5e37de14 | p5@uc007vxz.1 |
| 1.59e-63 | FFCP PHASE1:Mm9::chr7:132751140..132751183,+#_2342914e768b29d864662c273b9db822 | p@chr7:132751140..132751183, + |
| 1.59e-63 | FFCP PHASE2:Mm9::chr7:132751140..132751183,+#_2342914e768b29d864662c273b9db822 | p@chr7:132751140..132751183, + |
| 4.29e-63 | FFCP PHASE1:Mm9::chr5:123439274..123439290,+#_f735b488960fa2c6aa93dcadc6d84807 | p4@ENSMUST00000148466, p4@uc008zmw.1 |
| 4.29e-63 | FFCP PHASE1:Mm9::chr4:155405070..155405083,+#_f735b488960fa2c6aa93dcadc6d84807 | p@chr4:155405070..155405083, + |
| 4.29e-63 | FFCP PHASE1:Mm9::chr6:99045597..99045607,-#_f735b488960fa2c6aa93dcadc6d84807 | p@chr6:99045597..99045607, - |
| 4.29e-63 | FFCP PHASE2:Mm9::chr1:140069290..140069308,+#_f735b488960fa2c6aa93dcadc6d84807 | p@chr1:140069290..140069308, + |
| 4.29e-63 | FFCP PHASE1:Mm9::chr11:46200242..46200255,+#_f735b488960fa2c6aa93dcadc6d84807 | p@chr11:46200242..46200255, + |
| 4.29e-63 | FFCP PHASE1:Mm9::chr9:32539732..32539750,+#_f735b488960fa2c6aa93dcadc6d84807 | p@chr9:32539732..32539750, + |
| 4.29e-63 | FFCP PHASE1:Mm9::chr4:155396384..155396395,-#_f735b488960fa2c6aa93dcadc6d84807 | p@chr4:155396384..155396395, - |
| 4.29e-63 | FFCP PHASE1:Mm9::chr4:6830911..6830925,-#_f735b488960fa2c6aa93dcadc6d84807 | p@chr4:6830911..6830925, - |
| 4.29e-63 | FFCP PHASE2:Mm9::chr1:167720341..167720362,+#_f735b488960fa2c6aa93dcadc6d84807 | p@chr1:167720341..167720362, + |
| 4.29e-63 | FFCP PHASE1:Mm9::chr6:125215605..125215616,+#_f735b488960fa2c6aa93dcadc6d84807 | p3@4930417O13Rik |
