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{{UBERON
{{UBERON
|id=UBERON:0005311
|alt_id=
|name=mammary placode
|namespace=
|def="The mammary placode is a transient lens shaped structure that will give rise to the mammary bud proper[GO]." [GO:0060596]
|xref=
|is_a=UBERON:0005085
|synonym=
|comment=TODO develops_from
|comment=TODO develops_from
|alt_id=
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="The mammary placode is a transient lens shaped structure that will give rise to the mammary bud proper[GO]." [GO:0060596]
|subset=
|derives_from=
|derives_from=
|develops_from=UBERON:0008425
|develops_from=UBERON:0008425
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0005311
|is_a=UBERON:0011814
|is_obsolete=
|located_in=
|located_in=
|name=mammary placode
|namespace=
|obo_creation_date=
|part_of=
|part_of=
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|is_obsolete=
|subset=
|preceded_by=
|synonym=
|union_of=
|xref=
}}
}}

Revision as of 11:35, 12 September 2014

Name:mammary placode
Definition:"The mammary placode is a transient lens shaped structure that will give rise to the mammary bud proper[GO]." [GO:0060596]
Comments:TODO develops_from

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0011814(non-neurogenic ectodermal placode)
develops_from:UBERON:0008425(mammary ridge)



Children

develops from:UBERON:0005333 (mammary bud)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology



Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0005311 (mammary placode), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
5.72e-89FFCP PHASE1:Hg19::chr12:122439564..122439597,+#_68eadd04ad6c9526d6e8de375b98bfb1p4@WDR66
5.72e-89FFCP PHASE2:Hg19::chr12:122439564..122439597,+#_68eadd04ad6c9526d6e8de375b98bfb1p4@WDR66
2.57e-88FFCP PHASE1:Hg19::chr19:15160255..15160260,+#_2a4f481679d65f48b816b3eea23a99f1p4@CASP14
2.57e-88FFCP PHASE2:Hg19::chr19:15160255..15160260,+#_2a4f481679d65f48b816b3eea23a99f1p4@CASP14
1.87e-86FFCP PHASE2:Mm9::chr15:103393703..103393706,-#_30b6d7c8bf53f346980477d3b2cc2429p@chr15:103393703..103393706, -
1.87e-86FFCP PHASE2:Mm9::chr5:88106613..88106646,+#_30b6d7c8bf53f346980477d3b2cc2429p@chr5:88106613..88106646, +
1.87e-86FFCP PHASE1:Mm9::chr5:88209981..88209984,+#_30b6d7c8bf53f346980477d3b2cc2429p@chr5:88209981..88209984, +
1.87e-86FFCP PHASE1:Mm9::chr5:88100053..88100078,-#_30b6d7c8bf53f346980477d3b2cc2429p@chr5:88100053..88100078, -
1.87e-86FFCP PHASE2:Mm9::chr15:99366344..99366348,-#_30b6d7c8bf53f346980477d3b2cc2429p@chr15:99366344..99366348, -
1.87e-86FFCP PHASE1:Mm9::chr8:67022646..67022651,+#_30b6d7c8bf53f346980477d3b2cc2429p@chr8:67022646..67022651, +
1.87e-86FFCP PHASE1:Mm9::chr4:19765092..19765098,-#_30b6d7c8bf53f346980477d3b2cc2429p@chr4:19765092..19765098, -
1.87e-86FFCP PHASE1:Mm9::chr15:103393361..103393372,-#_30b6d7c8bf53f346980477d3b2cc2429p@chr15:103393361..103393372, -
1.87e-86FFCP PHASE2:Mm9::chr11:6537276..6537305,-#_30b6d7c8bf53f346980477d3b2cc2429p2@Wap
1.87e-86FFCP PHASE2:Mm9::chr5:88123708..88123719,-#_30b6d7c8bf53f346980477d3b2cc2429p@chr5:88123708..88123719, -
1.87e-86FFCP PHASE1:Mm9::chr5:88123602..88123609,-#_30b6d7c8bf53f346980477d3b2cc2429p@chr5:88123602..88123609, -
1.87e-86FFCP PHASE1:Mm9::chr12:53708625..53708630,+#_30b6d7c8bf53f346980477d3b2cc2429p@chr12:53708625..53708630, +
1.87e-86FFCP PHASE2:Mm9::chr4:118636797..118636805,+#_30b6d7c8bf53f346980477d3b2cc2429p@chr4:118636797..118636805, +
1.87e-86FFCP PHASE1:Mm9::chr3:79647358..79647364,-#_30b6d7c8bf53f346980477d3b2cc2429p@chr3:79647358..79647364, -
1.87e-86FFCP PHASE2:Mm9::chr5:88207188..88207211,+#_30b6d7c8bf53f346980477d3b2cc2429p@chr5:88207188..88207211, +
1.87e-86FFCP PHASE2:Mm9::chr19:4104421..4104423,+#_30b6d7c8bf53f346980477d3b2cc2429p@chr19:4104421..4104423, +
1.87e-86FFCP PHASE1:Mm9::chr5:88204791..88204807,+#_30b6d7c8bf53f346980477d3b2cc2429p@chr5:88204791..88204807, +
1.87e-86FFCP PHASE1:Mm9::chr11:6535548..6535558,-#_30b6d7c8bf53f346980477d3b2cc2429p@chr11:6535548..6535558, -
1.87e-86FFCP PHASE1:Mm9::chr9:67138095..67138099,-#_30b6d7c8bf53f346980477d3b2cc2429p@chr9:67138095..67138099, -
1.87e-86FFCP PHASE1:Mm9::chr5:88206460..88206469,+#_30b6d7c8bf53f346980477d3b2cc2429p@chr5:88206460..88206469, +
1.87e-86FFCP PHASE1:Mm9::chr5:88096251..88096262,+#_30b6d7c8bf53f346980477d3b2cc2429p@chr5:88096251..88096262, +
1.87e-86FFCP PHASE2:Mm9::chr5:88215676..88215679,+#_30b6d7c8bf53f346980477d3b2cc2429p@chr5:88215676..88215679, +
1.87e-86FFCP PHASE1:Mm9::chr8:47396093..47396097,+#_30b6d7c8bf53f346980477d3b2cc2429p@chr8:47396093..47396097, +
1.87e-86FFCP PHASE2:Mm9::chr11:100614219..100614221,-#_30b6d7c8bf53f346980477d3b2cc2429p@chr11:100614219..100614221, -
1.87e-86FFCP PHASE2:Mm9::chr5:88123602..88123609,-#_30b6d7c8bf53f346980477d3b2cc2429p@chr5:88123602..88123609, -
1.87e-86FFCP PHASE1:Mm9::chr5:88217757..88217772,+#_30b6d7c8bf53f346980477d3b2cc2429p@chr5:88217757..88217772, +
1.87e-86FFCP PHASE1:Mm9::chr5:88121763..88121767,-#_30b6d7c8bf53f346980477d3b2cc2429p@chr5:88121763..88121767, -
1.87e-86FFCP PHASE2:Mm9::chr5:88359054..88359083,-#_30b6d7c8bf53f346980477d3b2cc2429p@chr5:88359054..88359083, -
1.87e-86FFCP PHASE2:Mm9::chr6:35361971..35361978,+#_30b6d7c8bf53f346980477d3b2cc2429p@chr6:35361971..35361978, +
1.87e-86FFCP PHASE2:Mm9::chr5:88203952..88203961,+#_30b6d7c8bf53f346980477d3b2cc2429p@chr5:88203952..88203961, +
1.87e-86FFCP PHASE1:Mm9::chr5:88125200..88125204,-#_30b6d7c8bf53f346980477d3b2cc2429p@chr5:88125200..88125204, -
1.87e-86FFCP PHASE2:Mm9::chr13:90032838..90032840,-#_30b6d7c8bf53f346980477d3b2cc2429p@chr13:90032838..90032840, -
1.87e-86FFCP PHASE2:Mm9::chr15:103393267..103393277,-#_30b6d7c8bf53f346980477d3b2cc2429p@chr15:103393267..103393277, -
1.87e-86FFCP PHASE2:Mm9::chr5:88100568..88100584,-#_30b6d7c8bf53f346980477d3b2cc2429p@chr5:88100568..88100584, -
1.87e-86FFCP PHASE2:Mm9::chr5:88213564..88213565,+#_30b6d7c8bf53f346980477d3b2cc2429p@chr5:88213564..88213565, +
1.87e-86FFCP PHASE1:Mm9::chr4:118640438..118640443,+#_30b6d7c8bf53f346980477d3b2cc2429p@chr4:118640438..118640443, +
1.87e-86FFCP PHASE2:Mm9::chr4:43404975..43404982,+#_30b6d7c8bf53f346980477d3b2cc2429p@chr4:43404975..43404982, +
1.87e-86FFCP PHASE2:Mm9::chr5:88121815..88121823,-#_30b6d7c8bf53f346980477d3b2cc2429p@chr5:88121815..88121823, -
1.87e-86FFCP PHASE2:Mm9::chr8:52461156..52461158,+#_30b6d7c8bf53f346980477d3b2cc2429p@chr8:52461156..52461158, +
1.87e-86FFCP PHASE1:Mm9::chr5:88215650..88215658,-#_30b6d7c8bf53f346980477d3b2cc2429p@chr5:88215650..88215658, -
1.87e-86FFCP PHASE1:Mm9::chr5:88108071..88108075,-#_30b6d7c8bf53f346980477d3b2cc2429p@chr5:88108071..88108075, -
1.87e-86FFCP PHASE2:Mm9::chr5:88358889..88358911,-#_30b6d7c8bf53f346980477d3b2cc2429p@chr5:88358889..88358911, -
1.87e-86FFCP PHASE1:Mm9::chr15:24986864..24986868,-#_30b6d7c8bf53f346980477d3b2cc2429p@chr15:24986864..24986868, -
1.87e-86FFCP PHASE2:Mm9::chr5:88125078..88125099,-#_30b6d7c8bf53f346980477d3b2cc2429p@chr5:88125078..88125099, -
1.87e-86FFCP PHASE1:Mm9::chr5:88358988..88358999,-#_30b6d7c8bf53f346980477d3b2cc2429p@chr5:88358988..88358999, -
1.87e-86FFCP PHASE1:Mm9::chr5:88123821..88123845,+#_30b6d7c8bf53f346980477d3b2cc2429p@chr5:88123821..88123845, +
1.87e-86FFCP PHASE1:Mm9::chr13:23557637..23557642,-#_30b6d7c8bf53f346980477d3b2cc2429p@chr13:23557637..23557642, -
1.87e-86FFCP PHASE2:Mm9::chr5:88096268..88096283,+#_30b6d7c8bf53f346980477d3b2cc2429p@chr5:88096268..88096283, +
1.87e-86FFCP PHASE1:Mm9::chr9:47431371..47431374,+#_30b6d7c8bf53f346980477d3b2cc2429p@chr9:47431371..47431374, +
1.87e-86FFCP PHASE1:Mm9::chr5:38893346..38893365,-#_30b6d7c8bf53f346980477d3b2cc2429p5@Slc2a9
1.87e-86FFCP PHASE1:Mm9::chr4:118627452..118627463,-#_30b6d7c8bf53f346980477d3b2cc2429p2@ENSMUST00000155069, p2@uc008ulc.1
1.87e-86FFCP PHASE1:Mm9::chr15:98311094..98311111,-#_30b6d7c8bf53f346980477d3b2cc2429p@chr15:98311094..98311111, -
1.87e-86FFCP PHASE2:Mm9::chr15:98311094..98311111,-#_30b6d7c8bf53f346980477d3b2cc2429p@chr15:98311094..98311111, -
1.87e-86FFCP PHASE1:Mm9::chr14:30342837..30342838,-#_30b6d7c8bf53f346980477d3b2cc2429p@chr14:30342837..30342838, -
1.87e-86FFCP PHASE1:Mm9::chr11:6537234..6537253,+#_30b6d7c8bf53f346980477d3b2cc2429p@chr11:6537234..6537253, +
1.87e-86FFCP PHASE2:Mm9::chr3:155015789..155015791,-#_30b6d7c8bf53f346980477d3b2cc2429p@chr3:155015789..155015791, -
1.87e-86FFCP PHASE2:Mm9::chr15:103393830..103393851,+#_30b6d7c8bf53f346980477d3b2cc2429p@chr15:103393830..103393851, +
1.87e-86FFCP PHASE2:Mm9::chr5:88109040..88109079,+#_30b6d7c8bf53f346980477d3b2cc2429p@chr5:88109040..88109079, +
1.87e-86FFCP PHASE1:Mm9::chr5:88210863..88210879,-#_30b6d7c8bf53f346980477d3b2cc2429p@chr5:88210863..88210879, -
1.87e-86FFCP PHASE1:Mm9::chr5:88103215..88103245,+#_30b6d7c8bf53f346980477d3b2cc2429p@chr5:88103215..88103245, +
1.87e-86FFCP PHASE1:Mm9::chr1:40636991..40636997,-#_30b6d7c8bf53f346980477d3b2cc2429p@chr1:40636991..40636997, -
1.87e-86FFCP PHASE1:Mm9::chr15:103393712..103393723,-#_30b6d7c8bf53f346980477d3b2cc2429p@chr15:103393712..103393723, -
1.87e-86FFCP PHASE2:Mm9::chr5:88123793..88123819,+#_30b6d7c8bf53f346980477d3b2cc2429p@chr5:88123793..88123819, +
1.87e-86FFCP PHASE2:Mm9::chr4:118634204..118634217,+#_30b6d7c8bf53f346980477d3b2cc2429p3@Lao1
1.87e-86FFCP PHASE1:Mm9::chr5:88358854..88358874,+#_30b6d7c8bf53f346980477d3b2cc2429p@chr5:88358854..88358874, +
1.87e-86FFCP PHASE1:Mm9::chr5:88123681..88123725,+#_30b6d7c8bf53f346980477d3b2cc2429p@chr5:88123681..88123725, +
1.87e-86FFCP PHASE2:Mm9::chr4:118640598..118640603,-#_30b6d7c8bf53f346980477d3b2cc2429p@chr4:118640598..118640603, -
1.87e-86FFCP PHASE1:Mm9::chr15:81082279..81082303,-#_30b6d7c8bf53f346980477d3b2cc2429p1@uc007wwj.1
1.87e-86FFCP PHASE2:Mm9::chr5:88209161..88209183,-#_30b6d7c8bf53f346980477d3b2cc2429p@chr5:88209161..88209183, -
1.87e-86FFCP PHASE2:Mm9::chr16:93598605..93598606,-#_30b6d7c8bf53f346980477d3b2cc2429p@chr16:93598605..93598606, -
1.87e-86FFCP PHASE1:Mm9::chr9:77686655..77686662,+#_30b6d7c8bf53f346980477d3b2cc2429p@chr9:77686655..77686662, +
1.87e-86FFCP PHASE1:Mm9::chr5:88209047..88209050,-#_30b6d7c8bf53f346980477d3b2cc2429p@chr5:88209047..88209050, -
1.87e-86FFCP PHASE1:Mm9::chr5:88098535..88098555,+#_30b6d7c8bf53f346980477d3b2cc2429p@chr5:88098535..88098555, +
1.87e-86FFCP PHASE1:Mm9::chr18:6733951..6733958,+#_30b6d7c8bf53f346980477d3b2cc2429p@chr18:6733951..6733958, +
1.87e-86FFCP PHASE1:Mm9::chr11:6538794..6538800,-#_30b6d7c8bf53f346980477d3b2cc2429p4@Wap
1.87e-86FFCP PHASE2:Mm9::chr15:81082279..81082303,-#_30b6d7c8bf53f346980477d3b2cc2429p1@uc007wwj.1
1.87e-86FFCP PHASE2:Mm9::chr5:88217649..88217662,-#_30b6d7c8bf53f346980477d3b2cc2429p@chr5:88217649..88217662, -
1.87e-86FFCP PHASE1:Mm9::chr15:103393258..103393296,+#_30b6d7c8bf53f346980477d3b2cc2429p@chr15:103393258..103393296, +
1.87e-86FFCP PHASE2:Mm9::chr11:6535604..6535612,+#_30b6d7c8bf53f346980477d3b2cc2429p@chr11:6535604..6535612, +
1.87e-86FFCP PHASE2:Mm9::chr7:75913214..75913218,-#_30b6d7c8bf53f346980477d3b2cc2429p@chr7:75913214..75913218, -
1.87e-86FFCP PHASE2:Mm9::chr5:88123674..88123680,-#_30b6d7c8bf53f346980477d3b2cc2429p@chr5:88123674..88123680, -
1.87e-86FFCP PHASE1:Mm9::chr5:88123539..88123551,+#_30b6d7c8bf53f346980477d3b2cc2429p@chr5:88123539..88123551, +
1.87e-86FFCP PHASE1:Mm9::chr2:109975213..109975217,+#_30b6d7c8bf53f346980477d3b2cc2429p@chr2:109975213..109975217, +
1.87e-86FFCP PHASE1:Mm9::chr15:74707088..74707089,-#_30b6d7c8bf53f346980477d3b2cc2429p@chr15:74707088..74707089, -
1.87e-86FFCP PHASE2:Mm9::chr3:79647358..79647364,-#_30b6d7c8bf53f346980477d3b2cc2429p@chr3:79647358..79647364, -
1.87e-86FFCP PHASE2:Mm9::chr11:109658667..109658675,-#_30b6d7c8bf53f346980477d3b2cc2429p@chr11:109658667..109658675, -
1.87e-86FFCP PHASE2:Mm9::chr5:88103244..88103281,-#_30b6d7c8bf53f346980477d3b2cc2429p@chr5:88103244..88103281, -
1.87e-86FFCP PHASE2:Mm9::chr2:164568599..164568608,-#_30b6d7c8bf53f346980477d3b2cc2429p8@Wfdc3
1.87e-86FFCP PHASE2:Mm9::chr8:47396093..47396097,+#_30b6d7c8bf53f346980477d3b2cc2429p@chr8:47396093..47396097, +
1.87e-86FFCP PHASE2:Mm9::chr1:40637208..40637219,+#_30b6d7c8bf53f346980477d3b2cc2429p5@Slc9a4
1.87e-86FFCP PHASE2:Mm9::chr6:104295805..104295814,+#_30b6d7c8bf53f346980477d3b2cc2429p@chr6:104295805..104295814, +
1.87e-86FFCP PHASE2:Mm9::chr5:88215607..88215628,+#_30b6d7c8bf53f346980477d3b2cc2429p@chr5:88215607..88215628, +
1.87e-86FFCP PHASE1:Mm9::chr2:28416848..28416860,-#_30b6d7c8bf53f346980477d3b2cc2429p@chr2:28416848..28416860, -
1.87e-86FFCP PHASE2:Mm9::chr7:35963309..35963311,-#_30b6d7c8bf53f346980477d3b2cc2429p@chr7:35963309..35963311, -
1.87e-86FFCP PHASE2:Mm9::chr5:88123555..88123565,-#_30b6d7c8bf53f346980477d3b2cc2429p@chr5:88123555..88123565, -
1.87e-86FFCP PHASE1:Mm9::chr5:88217569..88217586,+#_30b6d7c8bf53f346980477d3b2cc2429p@chr5:88217569..88217586, +

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