Personal tools

UBERON:0009617: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
Line 1: Line 1:
{{UBERON
{{UBERON
|id=UBERON:0009617
|alt_id=
|name=head paraxial mesoderm
|namespace=
|def="Bilateral mesenchymal mesoderm parallel and immediately adjacent to the neural tube/notochord; it generates a subset of extra-ocular, and other head, muscles." [PMID:21610022]
|xref=EHDAA2:0000736;;EHDAA:364;;EMAPA:16171
|is_a=UBERON:0003104;;UBERON:0004120;;UBERON:0005291
|synonym="cephalic paraxial mesoderm" EXACT [UBERON:cjm];;"head paraxial mesenchyme" EXACT [EHDAA2:0000736]
|comment=
|comment=
|alt_id=
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="Bilateral mesenchymal mesoderm parallel and immediately adjacent to the neural tube/notochord; it generates a subset of extra-ocular, and other head, muscles." [PMID:21610022]
|subset=
|derives_from=
|derives_from=
|develops_from=UBERON:0000926
|develops_from=UBERON:0000926
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0009617
|is_a=UBERON:0006904
|is_obsolete=
|located_in=
|located_in=
|name=head paraxial mesoderm
|namespace=
|obo_creation_date=
|part_of=UBERON:0003077;;UBERON:0005253
|part_of=UBERON:0003077;;UBERON:0005253
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|is_obsolete=
|subset=
|preceded_by=
|synonym="cephalic paraxial mesoderm" EXACT [UBERON:cjm];;"head paraxial mesenchyme" EXACT [EHDAA2:0000736]
|union_of=
|xref=EHDAA2:0000736;;EHDAA:364;;EMAPA:16171
}}
}}

Revision as of 11:47, 12 September 2014

Name:head paraxial mesoderm
Definition:"Bilateral mesenchymal mesoderm parallel and immediately adjacent to the neural tube/notochord; it generates a subset of extra-ocular, and other head, muscles." [PMID:21610022]
Xrefs:
links:

EHDAA2:0000736
EHDAA:364

EMAPA:16171
Synonyms: "cephalic paraxial mesoderm" EXACT [UBERON:cjm]
"head paraxial mesenchyme" EXACT [EHDAA2:0000736]

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0006904(head mesenchyme from mesoderm)
develops_from:UBERON:0000926(mesoderm)
part_of:UBERON:0003077(paraxial mesoderm),UBERON:0005253(head mesenchyme)



Children

develops from:UBERON:0004761 (cartilaginous neurocranium),UBERON:0007647 (ectomeninx)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology



Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0009617 (head paraxial mesoderm), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
1.87e-86FFCP PHASE1:Mm9::chr6:30619443..30619450,-#_c6d67655ae3e8e9acffeefba96516e6ap13@Tsga14
1.87e-86FFCP PHASE1:Mm9::chr11:102123554..102123566,+#_c6d67655ae3e8e9acffeefba96516e6ap4@BC030867
1.87e-86FFCP PHASE1:Mm9::chr8:13425469..13425503,+#_c6d67655ae3e8e9acffeefba96516e6ap@chr8:13425469..13425503, +
1.87e-86FFCP PHASE1:Mm9::chr15:65641779..65641790,+#_c6d67655ae3e8e9acffeefba96516e6ap@chr15:65641779..65641790, +
1.87e-86FFCP PHASE1:Mm9::chr13:78257518..78257522,+#_c6d67655ae3e8e9acffeefba96516e6ap@chr13:78257518..78257522, +
1.87e-86FFCP PHASE2:Mm9::chr19:55255206..55255223,+#_c6d67655ae3e8e9acffeefba96516e6ap1@Tectb
1.87e-86FFCP PHASE1:Mm9::chr11:75421384..75421397,+#_c6d67655ae3e8e9acffeefba96516e6ap@chr11:75421384..75421397, +
1.87e-86FFCP PHASE2:Mm9::chr3:106986057..106986062,+#_c6d67655ae3e8e9acffeefba96516e6ap1@Kcna10
1.87e-86FFCP PHASE2:Mm9::chr9:42208023..42208043,-#_c6d67655ae3e8e9acffeefba96516e6ap4@Tecta
1.87e-86FFCP PHASE1:Mm9::chr1:60561636..60561645,-#_c6d67655ae3e8e9acffeefba96516e6ap@chr1:60561636..60561645, -
1.87e-86FFCP PHASE1:Mm9::chr17:13983198..13983203,+#_c6d67655ae3e8e9acffeefba96516e6ap@chr17:13983198..13983203, +
1.87e-86FFCP PHASE2:Mm9::chr18:59222033..59222043,+#_c6d67655ae3e8e9acffeefba96516e6ap7@A730017C20Rik
1.87e-86FFCP PHASE2:Mm9::chr1:43454162..43454170,-#_c6d67655ae3e8e9acffeefba96516e6ap@chr1:43454162..43454170, -
1.87e-86FFCP PHASE2:Mm9::chr10:107349418..107349423,-#_c6d67655ae3e8e9acffeefba96516e6ap5@Otogl
1.87e-86FFCP PHASE1:Mm9::chr15:12848147..12848162,+#_c6d67655ae3e8e9acffeefba96516e6ap@chr15:12848147..12848162, +
1.87e-86FFCP PHASE1:Mm9::chr13:48087761..48087775,-#_c6d67655ae3e8e9acffeefba96516e6ap@chr13:48087761..48087775, -
1.87e-86FFCP PHASE2:Mm9::chr1:93218694..93218705,+#_c6d67655ae3e8e9acffeefba96516e6ap1@Espnl
1.87e-86FFCP PHASE2:Mm9::chr17:31335869..31335899,-#_c6d67655ae3e8e9acffeefba96516e6ap1@Tmprss3
1.87e-86FFCP PHASE2:Mm9::chr14:47293487..47293493,-#_c6d67655ae3e8e9acffeefba96516e6ap@chr14:47293487..47293493, -
1.87e-86FFCP PHASE1:Mm9::chr6:86745686..86745727,-#_c6d67655ae3e8e9acffeefba96516e6ap@chr6:86745686..86745727, -
1.87e-86FFCP PHASE1:Mm9::chr11:4689776..4689785,-#_c6d67655ae3e8e9acffeefba96516e6ap@chr11:4689776..4689785, -
1.87e-86FFCP PHASE2:Mm9::chr18:42158627..42158630,-#_c6d67655ae3e8e9acffeefba96516e6ap@chr18:42158627..42158630, -
1.87e-86FFCP PHASE2:Mm9::chr9:42207697..42207705,-#_c6d67655ae3e8e9acffeefba96516e6ap@chr9:42207697..42207705, -
1.87e-86FFCP PHASE1:Mm9::chr3:69811590..69811601,+#_c6d67655ae3e8e9acffeefba96516e6ap1@Otol1
1.87e-86FFCP PHASE2:Mm9::chr13:78257491..78257498,+#_c6d67655ae3e8e9acffeefba96516e6ap@chr13:78257491..78257498, +
1.87e-86FFCP PHASE2:Mm9::chrX:154140800..154140810,+#_c6d67655ae3e8e9acffeefba96516e6ap@chrX:154140800..154140810, +
1.87e-86FFCP PHASE2:Mm9::chr2:128881546..128881553,-#_c6d67655ae3e8e9acffeefba96516e6ap@chr2:128881546..128881553, -
1.87e-86FFCP PHASE1:Mm9::chr9:42207998..42208009,-#_c6d67655ae3e8e9acffeefba96516e6ap6@Tecta
1.87e-86FFCP PHASE1:Mm9::chr1:94627290..94627299,-#_c6d67655ae3e8e9acffeefba96516e6ap@chr1:94627290..94627299, -
1.87e-86FFCP PHASE2:Mm9::chr1:194818647..194818660,-#_c6d67655ae3e8e9acffeefba96516e6ap@chr1:194818647..194818660, -
1.87e-86FFCP PHASE2:Mm9::chr5:68423014..68423037,+#_c6d67655ae3e8e9acffeefba96516e6ap1@Grxcr1
1.87e-86FFCP PHASE1:Mm9::chr9:92087926..92087938,+#_c6d67655ae3e8e9acffeefba96516e6ap2@Plscr5
1.87e-86FFCP PHASE2:Mm9::chr3:154693281..154693317,-#_c6d67655ae3e8e9acffeefba96516e6ap@chr3:154693281..154693317, -
1.87e-86FFCP PHASE1:Mm9::chr1:172843847..172843880,-#_c6d67655ae3e8e9acffeefba96516e6ap@chr1:172843847..172843880, -
1.87e-86FFCP PHASE1:Mm9::chr16:96494788..96494801,+#_c6d67655ae3e8e9acffeefba96516e6ap12@B3galt5
1.87e-86FFCP PHASE2:Mm9::chr7:88068153..88068160,-#_c6d67655ae3e8e9acffeefba96516e6ap10@Sec11a
1.87e-86FFCP PHASE1:Mm9::chr1:78523144..78523177,+#_c6d67655ae3e8e9acffeefba96516e6ap@chr1:78523144..78523177, +
1.87e-86FFCP PHASE2:Mm9::chr10:80806047..80806059,-#_c6d67655ae3e8e9acffeefba96516e6ap4@Gipc3
1.87e-86FFCP PHASE1:Mm9::chr3:154459246..154459253,+#_c6d67655ae3e8e9acffeefba96516e6ap@chr3:154459246..154459253, +
1.87e-86FFCP PHASE2:Mm9::chr6:86746562..86746579,-#_c6d67655ae3e8e9acffeefba96516e6ap@chr6:86746562..86746579, -
1.87e-86FFCP PHASE2:Mm9::chr15:58480061..58480066,+#_c6d67655ae3e8e9acffeefba96516e6ap5@Fer1l6
1.87e-86FFCP PHASE1:Mm9::chr11:89702580..89702593,-#_c6d67655ae3e8e9acffeefba96516e6ap@chr11:89702580..89702593, -
1.87e-86FFCP PHASE1:Mm9::chr10:107156949..107156956,-#_c6d67655ae3e8e9acffeefba96516e6ap3@Ptprq
1.87e-86FFCP PHASE1:Mm9::chr9:42207397..42207408,-#_c6d67655ae3e8e9acffeefba96516e6ap@chr9:42207397..42207408, -
1.87e-86FFCP PHASE1:Mm9::chr6:29428397..29428407,-#_c6d67655ae3e8e9acffeefba96516e6ap@chr6:29428397..29428407, -
1.87e-86FFCP PHASE1:Mm9::chr10:97109753..97109764,+#_c6d67655ae3e8e9acffeefba96516e6ap3@Epyc
1.87e-86FFCP PHASE2:Mm9::chr4:130461150..130461185,+#_c6d67655ae3e8e9acffeefba96516e6ap@chr4:130461150..130461185, +
1.87e-86FFCP PHASE1:Mm9::chr2:121206695..121206711,-#_c6d67655ae3e8e9acffeefba96516e6ap1@Strc
1.87e-86FFCP PHASE1:Mm9::chr15:58022966..58022995,-#_c6d67655ae3e8e9acffeefba96516e6ap@chr15:58022966..58022995, -
1.87e-86FFCP PHASE2:Mm9::chr6:30619378..30619412,-#_c6d67655ae3e8e9acffeefba96516e6ap11@Tsga14
1.87e-86FFCP PHASE2:Mm9::chr9:42207887..42207960,-#_c6d67655ae3e8e9acffeefba96516e6ap1@Tecta
1.87e-86FFCP PHASE1:Mm9::chr5:147854240..147854249,-#_c6d67655ae3e8e9acffeefba96516e6ap@chr5:147854240..147854249, -
1.87e-86FFCP PHASE1:Mm9::chr18:42158627..42158630,-#_c6d67655ae3e8e9acffeefba96516e6ap@chr18:42158627..42158630, -
1.87e-86FFCP PHASE2:Mm9::chr11:114603036..114603048,+#_c6d67655ae3e8e9acffeefba96516e6ap@chr11:114603036..114603048, +
1.87e-86FFCP PHASE1:Mm9::chr2:53464168..53464175,+#_c6d67655ae3e8e9acffeefba96516e6ap@chr2:53464168..53464175, +
1.87e-86FFCP PHASE2:Mm9::chr1:172843813..172843834,-#_c6d67655ae3e8e9acffeefba96516e6ap@chr1:172843813..172843834, -
1.87e-86FFCP PHASE1:Mm9::chr13:43699228..43699239,+#_c6d67655ae3e8e9acffeefba96516e6ap@chr13:43699228..43699239, +
1.87e-86FFCP PHASE2:Mm9::chr3:35012425..35012439,+#_c6d67655ae3e8e9acffeefba96516e6ap@chr3:35012425..35012439, +
1.87e-86FFCP PHASE2:Mm9::chr8:13435173..13435186,+#_c6d67655ae3e8e9acffeefba96516e6ap6@Fam70b
1.87e-86FFCP PHASE2:Mm9::chr4:115556989..115556997,+#_c6d67655ae3e8e9acffeefba96516e6ap1@Kncn
1.87e-86FFCP PHASE2:Mm9::chr17:13983160..13983167,+#_c6d67655ae3e8e9acffeefba96516e6ap@chr17:13983160..13983167, +
1.87e-86FFCP PHASE1:Mm9::chr19:55255289..55255299,+#_c6d67655ae3e8e9acffeefba96516e6ap2@Tectb
1.87e-86FFCP PHASE2:Mm9::chr9:42206745..42206774,-#_c6d67655ae3e8e9acffeefba96516e6ap@chr9:42206745..42206774, -
1.87e-86FFCP PHASE2:Mm9::chr10:81091447..81091464,+#_c6d67655ae3e8e9acffeefba96516e6ap9@Ankrd24
1.87e-86FFCP PHASE1:Mm9::chr15:97806034..97806061,+#_c6d67655ae3e8e9acffeefba96516e6ap@chr15:97806034..97806061, +
1.87e-86FFCP PHASE2:Mm9::chr7:53496326..53496340,+#_c6d67655ae3e8e9acffeefba96516e6ap1@Otog
1.87e-86FFCP PHASE2:Mm9::chr5:3909310..3909321,+#_c6d67655ae3e8e9acffeefba96516e6ap@chr5:3909310..3909321, +
1.87e-86FFCP PHASE1:Mm9::chr14:31283072..31283081,-#_c6d67655ae3e8e9acffeefba96516e6ap@chr14:31283072..31283081, -
1.87e-86FFCP PHASE2:Mm9::chr11:102123535..102123544,+#_c6d67655ae3e8e9acffeefba96516e6ap5@BC030867
1.87e-86FFCP PHASE2:Mm9::chr11:75421384..75421397,+#_c6d67655ae3e8e9acffeefba96516e6ap@chr11:75421384..75421397, +
1.87e-86FFCP PHASE1:Mm9::chr6:113251606..113251613,+#_c6d67655ae3e8e9acffeefba96516e6ap@chr6:113251606..113251613, +
1.87e-86FFCP PHASE1:Mm9::chr4:130461150..130461185,+#_c6d67655ae3e8e9acffeefba96516e6ap@chr4:130461150..130461185, +
1.87e-86FFCP PHASE1:Mm9::chr17:13983095..13983100,+#_c6d67655ae3e8e9acffeefba96516e6ap@chr17:13983095..13983100, +
1.87e-86FFCP PHASE1:Mm9::chr9:42207852..42207876,-#_c6d67655ae3e8e9acffeefba96516e6ap2@Tecta
1.87e-86FFCP PHASE1:Mm9::chr7:29733825..29733837,-#_c6d67655ae3e8e9acffeefba96516e6ap@chr7:29733825..29733837, -
1.87e-86FFCP PHASE1:Mm9::chr1:93235228..93235249,+#_c6d67655ae3e8e9acffeefba96516e6ap@chr1:93235228..93235249, +
1.87e-86FFCP PHASE2:Mm9::chr4:151505798..151505818,-#_c6d67655ae3e8e9acffeefba96516e6ap21@Espn
1.87e-86FFCP PHASE1:Mm9::chr15:85334335..85334353,+#_c6d67655ae3e8e9acffeefba96516e6ap@chr15:85334335..85334353, +
1.87e-86FFCP PHASE2:Mm9::chr2:67011921..67011934,+#_c6d67655ae3e8e9acffeefba96516e6ap2@Gm1322
1.87e-86FFCP PHASE1:Mm9::chr12:109905399..109905416,+#_c6d67655ae3e8e9acffeefba96516e6ap@chr12:109905399..109905416, +
1.87e-86FFCP PHASE1:Mm9::chr10:107349392..107349413,-#_c6d67655ae3e8e9acffeefba96516e6ap2@Otogl
1.87e-86FFCP PHASE1:Mm9::chr10:80806047..80806059,-#_c6d67655ae3e8e9acffeefba96516e6ap4@Gipc3
1.87e-86FFCP PHASE2:Mm9::chr2:152453066..152453075,-#_c6d67655ae3e8e9acffeefba96516e6ap@chr2:152453066..152453075, -
1.87e-86FFCP PHASE2:Mm9::chr12:13508046..13508055,+#_c6d67655ae3e8e9acffeefba96516e6ap@chr12:13508046..13508055, +
1.87e-86FFCP PHASE2:Mm9::chr5:150945209..150945220,+#_c6d67655ae3e8e9acffeefba96516e6ap@chr5:150945209..150945220, +
1.87e-86FFCP PHASE1:Mm9::chr13:78322370..78322376,-#_c6d67655ae3e8e9acffeefba96516e6ap4@uc007rhb.1
1.87e-86FFCP PHASE2:Mm9::chr19:55255289..55255299,+#_c6d67655ae3e8e9acffeefba96516e6ap2@Tectb
1.87e-86FFCP PHASE1:Mm9::chr7:109052262..109052291,-#_c6d67655ae3e8e9acffeefba96516e6ap1@Tomt
1.87e-86FFCP PHASE1:Mm9::chr2:152453066..152453075,-#_c6d67655ae3e8e9acffeefba96516e6ap@chr2:152453066..152453075, -
1.87e-86FFCP PHASE2:Mm9::chr9:42208142..42208157,-#_c6d67655ae3e8e9acffeefba96516e6ap10@Tecta
1.87e-86FFCP PHASE1:Mm9::chr5:28035962..28035983,+#_c6d67655ae3e8e9acffeefba96516e6ap@chr5:28035962..28035983, +
1.87e-86FFCP PHASE1:Mm9::chr4:101908153..101908163,+#_c6d67655ae3e8e9acffeefba96516e6ap@chr4:101908153..101908163, +
1.87e-86FFCP PHASE1:Mm9::chr9:42206730..42206739,-#_c6d67655ae3e8e9acffeefba96516e6ap@chr9:42206730..42206739, -
1.87e-86FFCP PHASE1:Mm9::chr1:63733478..63733491,-#_c6d67655ae3e8e9acffeefba96516e6ap1@Dytn
1.87e-86FFCP PHASE2:Mm9::chr4:63079735..63079745,-#_c6d67655ae3e8e9acffeefba96516e6ap@chr4:63079735..63079745, -
1.87e-86FFCP PHASE2:Mm9::chr5:147854240..147854249,-#_c6d67655ae3e8e9acffeefba96516e6ap@chr5:147854240..147854249, -
1.87e-86FFCP PHASE2:Mm9::chr10:107349430..107349440,-#_c6d67655ae3e8e9acffeefba96516e6ap3@Otogl
1.87e-86FFCP PHASE1:Mm9::chr3:106986057..106986062,+#_c6d67655ae3e8e9acffeefba96516e6ap1@Kcna10
1.87e-86FFCP PHASE1:Mm9::chr13:58283583..58283607,-#_c6d67655ae3e8e9acffeefba96516e6ap@chr13:58283583..58283607, -
1.87e-86FFCP PHASE2:Mm9::chr1:93235228..93235249,+#_c6d67655ae3e8e9acffeefba96516e6ap@chr1:93235228..93235249, +

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=UBERON:0009617&oldid=3274645"