FF:10002-101A5: Difference between revisions
From FANTOM5_SSTAR
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|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|datafreeze_phase=1 | |||
|def= | |def= | ||
|expression_enrichment_score=chr17:26697304..26697335,-!p1@SEBOX,p1@VTN!3.33!2150.16!SEBOX;;chr4:57547454..57547469,-!p1@HOPX!2.64!438.03!HOPX;;chr17:26697276..26697303,-!p2@SEBOX,p2@VTN!2.62!418.66!SEBOX;;chr17:26697257..26697268,-!p3@SEBOX,p3@VTN!2.22!165.28!SEBOX;;chr6:134210243..134210257,+!p1@TCF21!2.14!136.84!TCF21;;chr19:57352087..57352102,-!p1@PEG3,p1@ZIM2!2.04!109.12!PEG3;;chr1:214161272..214161322,+!p1@PROX1!1.85!96.55!PROX1;;chr6:53013620..53013644,-!p1@GCM1!1.81!62.86!GCM1;;chr7:73038839..73038862,-!p1@MLXIPL!1.72!51.93!MLXIPL;;chr11:47400078..47400106,-!p1@SPI1!1.72!51.73!SPI1;;chr1:151804244..151804310,-!p1@RORC!1.69!48.53!RORC;;chr15:53082521..53082549,-!p1@ONECUT1!1.69!48.12!ONECUT1;;chr8:135708787..135708805,-!p2@ZFAT!1.69!48.02!ZFAT;;chr6:10412600..10412637,-!p1@TFAP2A!1.63!68.11!TFAP2A;;chr17:53344980..53345011,+!p3@HLF!1.62!41.01!HLF;;chr17:53344945..53344977,+!p2@HLF!1.62!40.29!HLF;;chr2:68592406..68592424,+!p1@PLEK!1.59!38.02!PLEK;;chrX:131547625..131547644,-!p4@MBNL3!1.59!37.61!MBNL3;;chr6:10415276..10415341,-!p2@TFAP2A!1.55!41.42!TFAP2A;;chr20:43029862..43029900,+!p1@HNF4A!1.55!34.72!HNF4A;;chr12:100867653..100867677,+!p2@NR1H4!1.55!34.31!NR1H4;;chr1:201979703..201979721,+!p2@ELF3!1.55!34.21!ELF3;;chr16:86544113..86544145,+!p1@FOXF1!1.54!41.01!FOXF1;;chr1:201979743..201979762,+!p1@ELF3!1.54!33.39!ELF3;;chr19:33793430..33793447,-!p1@CEBPA!1.53!133.03!CEBPA;;chr8:10588010..10588030,-!p1@SOX7!1.49!30.09!SOX7;;chr21:39870339..39870443,-!p1@ERG!1.49!29.88!ERG;;chr1:27240455..27240474,-!p1@NR0B2!1.47!28.54!NR0B2;;chr20:62680984..62680999,-!p1@SOX18!1.43!34.00!SOX18;;chr3:128212033..128212051,-!p1@GATA2!1.43!26.07!GATA2;;chrX:66763856..66763896,+!p1@AR!1.42!36.27!AR;;chr4:174451370..174451387,-!p1@HAND2!1.41!24.52!HAND2;;chr16:85932760..85932775,+!p1@IRF8!1.40!23.91!IRF8;;chr2:46524897..46524911,+!p2@EPAS1!1.39!64.71!EPAS1;;chr22:41763452..41763466,+!p2@TEF!1.39!23.39!TEF;;chr3:12330560..12330579,+!p1@PPARG!1.38!26.38!PPARG;;chr1:161208013..161208038,-!p1@NR1I3!1.38!23.08!NR1I3;;chr12:100867627..100867652,+!p1@NR1H4!1.38!23.08!NR1H4;;chr19:46367576..46367592,+!p1@FOXA3!1.37!22.67!FOXA3;;chr15:42749722..42749739,-!p2@ZFP106!1.35!37.71!ZFP106;;chr17:80797886..80797906,-!p1@ZNF750!1.34!21.02!ZNF750;;chr17:53342311..53342400,+!p1@HLF!1.32!22.67!HLF;;chr8:76319876..76319926,+!p1@HNF4G!1.32!20.09!HNF4G;;chrX:131547596..131547609,-!p10@MBNL3!1.32!19.68!MBNL3;;chr16:79634624..79634642,-!p1@MAF!1.31!75.63!MAF;;chr19:4153613..4153652,+!p1@CREB3L3!1.31!19.47!CREB3L3;;chr20:62365971..62365986,+!p5@ZGPAT!1.31!19.27!ZGPAT;;chr21:34442439..34442455,+!p1@OLIG1!1.30!19.06!OLIG1;;chr7:96654133..96654150,-!p1@DLX5!1.30!18.96!DLX5;;chr3:126076242..126076257,-!p1@KLF15!1.29!23.18!KLF15;;chr1:216896752..216896778,-!p1@ESRRG!1.29!18.34!ESRRG;;chr1:40105299..40105326,-!p1@HEYL!1.29!18.34!HEYL;;chr4:87857474..87857489,+!p7@AFF1!1.28!31.43!AFF1;;chr1:209979467..209979494,-!p1@IRF6!1.28!20.40!IRF6;;chr1:199996733..199996781,+!p1@NR5A2!1.28!17.93!NR5A2;;chr8:102504651..102504683,+!p1@GRHL2!1.28!17.93!GRHL2;;chr20:55204351..55204377,+!p1@TFAP2C!1.27!22.36!TFAP2C;;chrX:70319128..70319142,+!p3@FOXO4!1.27!17.52!FOXO4;;chr10:8096631..8096660,+!p1@GATA3!1.26!20.92!GATA3;;chr7:115670804..115670825,-!p1@TFEC!1.26!17.21!TFEC;;chr1:61548225..61548299,+!p1@NFIA!1.25!212.37!NFIA;;chrX:70316005..70316034,+!p2@FOXO4!1.25!29.98!FOXO4;;chr7:15726296..15726315,-!p1@MEOX2!1.25!16.80!MEOX2;;chr19:46801639..46801699,+!p1@HIF3A!1.25!16.69!HIF3A;;chr20:43030002..43030028,+!p3@HNF4A!1.25!16.59!HNF4A;;chr11:113930425..113930471,+!p1@ZBTB16!1.23!23.08!ZBTB16;;chr1:6479968..6479986,-!p1@HES2!1.23!16.18!HES2;;chr10:8096772..8096787,+!p2@GATA3!1.22!18.34!GATA3;;chr1:161207986..161207998,-!p2@NR1I3!1.21!15.15!NR1I3;;chr5:71803177..71803255,-!p1@ZNF366!1.19!14.53!ZNF366;;chr14:38064429..38064486,-!p1@FOXA1!1.19!14.43!FOXA1;;chr2:145277882..145277967,-!p3@ZEB2!1.18!24.32!ZEB2;;chr17:59529743..59529798,+!p1@TBX4!1.18!14.22!TBX4;;chr12:24715376..24715432,-!p1@SOX5!1.17!17.62!SOX5;;chr6:151977801..151977813,+!p8@ESR1!1.17!13.81!ESR1;;chr8:71316428..71316459,-!p2@NCOA2!1.14!21.43!NCOA2;;chr1:216896780..216896800,-!p2@ESRRG!1.14!12.78!ESRRG;;chr11:34642612..34642646,+!p1@EHF!1.13!12.47!EHF;;chr4:87856129..87856186,+!p1@AFF1!1.12!166.00!AFF1;;chr2:10091815..10091864,+!p1@GRHL1!1.12!16.07!GRHL1;;chr7:28725715..28725727,+!p3@CREB5!1.12!14.43!CREB5;;chr19:50432453..50432468,+!p1@ATF5!1.11!664.61!ATF5;;chr4:87856191..87856208,+!p2@AFF1!1.11!94.90!AFF1;;chr11:113930291..113930339,+!p2@ZBTB16!1.10!18.96!ZBTB16;;chr5:2751762..2751784,-!p1@IRX2!1.10!11.64!IRX2;;chr20:22564895..22564910,-!p1@FOXA2!1.10!11.54!FOXA2;;chr2:122042770..122042785,-!p1@TFCP2L1!1.09!11.44!TFCP2L1;;chr1:42801540..42801562,-!p4@FOXJ3!1.09!11.23!FOXJ3;;chr6:10412392..10412409,-!p4@TFAP2A!1.08!12.47!TFAP2A;;chr6:10415484..10415508,-!p3@TFAP2A!1.08!11.13!TFAP2A;;chr13:72441315..72441454,-!p1@DACH1!1.07!21.84!DACH1;;chr10:8095593..8095625,+!p3@GATA3!1.07!12.67!GATA3;;chr18:53068911..53068935,-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| |expression_enrichment_score=chr17:26697304..26697335,-!p1@SEBOX,p1@VTN!3.33!2150.16!SEBOX;;chr4:57547454..57547469,-!p1@HOPX!2.64!438.03!HOPX;;chr17:26697276..26697303,-!p2@SEBOX,p2@VTN!2.62!418.66!SEBOX;;chr17:26697257..26697268,-!p3@SEBOX,p3@VTN!2.22!165.28!SEBOX;;chr6:134210243..134210257,+!p1@TCF21!2.14!136.84!TCF21;;chr19:57352087..57352102,-!p1@PEG3,p1@ZIM2!2.04!109.12!PEG3;;chr1:214161272..214161322,+!p1@PROX1!1.85!96.55!PROX1;;chr6:53013620..53013644,-!p1@GCM1!1.81!62.86!GCM1;;chr7:73038839..73038862,-!p1@MLXIPL!1.72!51.93!MLXIPL;;chr11:47400078..47400106,-!p1@SPI1!1.72!51.73!SPI1;;chr1:151804244..151804310,-!p1@RORC!1.69!48.53!RORC;;chr15:53082521..53082549,-!p1@ONECUT1!1.69!48.12!ONECUT1;;chr8:135708787..135708805,-!p2@ZFAT!1.69!48.02!ZFAT;;chr6:10412600..10412637,-!p1@TFAP2A!1.63!68.11!TFAP2A;;chr17:53344980..53345011,+!p3@HLF!1.62!41.01!HLF;;chr17:53344945..53344977,+!p2@HLF!1.62!40.29!HLF;;chr2:68592406..68592424,+!p1@PLEK!1.59!38.02!PLEK;;chrX:131547625..131547644,-!p4@MBNL3!1.59!37.61!MBNL3;;chr6:10415276..10415341,-!p2@TFAP2A!1.55!41.42!TFAP2A;;chr20:43029862..43029900,+!p1@HNF4A!1.55!34.72!HNF4A;;chr12:100867653..100867677,+!p2@NR1H4!1.55!34.31!NR1H4;;chr1:201979703..201979721,+!p2@ELF3!1.55!34.21!ELF3;;chr16:86544113..86544145,+!p1@FOXF1!1.54!41.01!FOXF1;;chr1:201979743..201979762,+!p1@ELF3!1.54!33.39!ELF3;;chr19:33793430..33793447,-!p1@CEBPA!1.53!133.03!CEBPA;;chr8:10588010..10588030,-!p1@SOX7!1.49!30.09!SOX7;;chr21:39870339..39870443,-!p1@ERG!1.49!29.88!ERG;;chr1:27240455..27240474,-!p1@NR0B2!1.47!28.54!NR0B2;;chr20:62680984..62680999,-!p1@SOX18!1.43!34.00!SOX18;;chr3:128212033..128212051,-!p1@GATA2!1.43!26.07!GATA2;;chrX:66763856..66763896,+!p1@AR!1.42!36.27!AR;;chr4:174451370..174451387,-!p1@HAND2!1.41!24.52!HAND2;;chr16:85932760..85932775,+!p1@IRF8!1.40!23.91!IRF8;;chr2:46524897..46524911,+!p2@EPAS1!1.39!64.71!EPAS1;;chr22:41763452..41763466,+!p2@TEF!1.39!23.39!TEF;;chr3:12330560..12330579,+!p1@PPARG!1.38!26.38!PPARG;;chr1:161208013..161208038,-!p1@NR1I3!1.38!23.08!NR1I3;;chr12:100867627..100867652,+!p1@NR1H4!1.38!23.08!NR1H4;;chr19:46367576..46367592,+!p1@FOXA3!1.37!22.67!FOXA3;;chr15:42749722..42749739,-!p2@ZFP106!1.35!37.71!ZFP106;;chr17:80797886..80797906,-!p1@ZNF750!1.34!21.02!ZNF750;;chr17:53342311..53342400,+!p1@HLF!1.32!22.67!HLF;;chr8:76319876..76319926,+!p1@HNF4G!1.32!20.09!HNF4G;;chrX:131547596..131547609,-!p10@MBNL3!1.32!19.68!MBNL3;;chr16:79634624..79634642,-!p1@MAF!1.31!75.63!MAF;;chr19:4153613..4153652,+!p1@CREB3L3!1.31!19.47!CREB3L3;;chr20:62365971..62365986,+!p5@ZGPAT!1.31!19.27!ZGPAT;;chr21:34442439..34442455,+!p1@OLIG1!1.30!19.06!OLIG1;;chr7:96654133..96654150,-!p1@DLX5!1.30!18.96!DLX5;;chr3:126076242..126076257,-!p1@KLF15!1.29!23.18!KLF15;;chr1:216896752..216896778,-!p1@ESRRG!1.29!18.34!ESRRG;;chr1:40105299..40105326,-!p1@HEYL!1.29!18.34!HEYL;;chr4:87857474..87857489,+!p7@AFF1!1.28!31.43!AFF1;;chr1:209979467..209979494,-!p1@IRF6!1.28!20.40!IRF6;;chr1:199996733..199996781,+!p1@NR5A2!1.28!17.93!NR5A2;;chr8:102504651..102504683,+!p1@GRHL2!1.28!17.93!GRHL2;;chr20:55204351..55204377,+!p1@TFAP2C!1.27!22.36!TFAP2C;;chrX:70319128..70319142,+!p3@FOXO4!1.27!17.52!FOXO4;;chr10:8096631..8096660,+!p1@GATA3!1.26!20.92!GATA3;;chr7:115670804..115670825,-!p1@TFEC!1.26!17.21!TFEC;;chr1:61548225..61548299,+!p1@NFIA!1.25!212.37!NFIA;;chrX:70316005..70316034,+!p2@FOXO4!1.25!29.98!FOXO4;;chr7:15726296..15726315,-!p1@MEOX2!1.25!16.80!MEOX2;;chr19:46801639..46801699,+!p1@HIF3A!1.25!16.69!HIF3A;;chr20:43030002..43030028,+!p3@HNF4A!1.25!16.59!HNF4A;;chr11:113930425..113930471,+!p1@ZBTB16!1.23!23.08!ZBTB16;;chr1:6479968..6479986,-!p1@HES2!1.23!16.18!HES2;;chr10:8096772..8096787,+!p2@GATA3!1.22!18.34!GATA3;;chr1:161207986..161207998,-!p2@NR1I3!1.21!15.15!NR1I3;;chr5:71803177..71803255,-!p1@ZNF366!1.19!14.53!ZNF366;;chr14:38064429..38064486,-!p1@FOXA1!1.19!14.43!FOXA1;;chr2:145277882..145277967,-!p3@ZEB2!1.18!24.32!ZEB2;;chr17:59529743..59529798,+!p1@TBX4!1.18!14.22!TBX4;;chr12:24715376..24715432,-!p1@SOX5!1.17!17.62!SOX5;;chr6:151977801..151977813,+!p8@ESR1!1.17!13.81!ESR1;;chr8:71316428..71316459,-!p2@NCOA2!1.14!21.43!NCOA2;;chr1:216896780..216896800,-!p2@ESRRG!1.14!12.78!ESRRG;;chr11:34642612..34642646,+!p1@EHF!1.13!12.47!EHF;;chr4:87856129..87856186,+!p1@AFF1!1.12!166.00!AFF1;;chr2:10091815..10091864,+!p1@GRHL1!1.12!16.07!GRHL1;;chr7:28725715..28725727,+!p3@CREB5!1.12!14.43!CREB5;;chr19:50432453..50432468,+!p1@ATF5!1.11!664.61!ATF5;;chr4:87856191..87856208,+!p2@AFF1!1.11!94.90!AFF1;;chr11:113930291..113930339,+!p2@ZBTB16!1.10!18.96!ZBTB16;;chr5:2751762..2751784,-!p1@IRX2!1.10!11.64!IRX2;;chr20:22564895..22564910,-!p1@FOXA2!1.10!11.54!FOXA2;;chr2:122042770..122042785,-!p1@TFCP2L1!1.09!11.44!TFCP2L1;;chr1:42801540..42801562,-!p4@FOXJ3!1.09!11.23!FOXJ3;;chr6:10412392..10412409,-!p4@TFAP2A!1.08!12.47!TFAP2A;;chr6:10415484..10415508,-!p3@TFAP2A!1.08!11.13!TFAP2A;;chr13:72441315..72441454,-!p1@DACH1!1.07!21.84!DACH1;;chr10:8095593..8095625,+!p3@GATA3!1.07!12.67!GATA3;;chr18:53068911..53068935,-!p4@TCF4!1.07!12.16!TCF4;;chr17:15942934..15942957,-!p5@NCOR1!1.07!10.72!NCOR1;;chr11:47400062..47400077,-!p2@SPI1!1.06!10.61!SPI1;;chr17:48072574..48072597,-!p1@DLX3!1.06!10.51!DLX3;;chrY:21906594..21906622,-!p1@KDM5D!1.06!10.41!KDM5D;;chr20:39317868..39317884,-!p1@MAFB!1.05!121.18!MAFB;;chr3:114819124..114819200,-!p3@ZBTB20!1.05!23.80!ZBTB20;;chr16:79634595..79634620,-!p2@MAF!1.05!18.75!MAF;;chr17:6926362..6926377,+!p1@BCL6B!1.05!10.30!BCL6B;;chr3:126073018..126073036,-!p3@KLF15!1.05!10.20!KLF15;;chr17:59477233..59477263,+!p1@TBX2!1.04!31.53!TBX2;;chr8:55370487..55370503,+!p1@SOX17!1.04!9.99!SOX17;;chr12:115122318..115122331,-!p2@TBX3!1.04!9.89!TBX3;;chr6:10412576..10412599,-!p5@TFAP2A!1.02!9.58!TFAP2A;;chr7:15726243..15726293,-!p2@MEOX2!1.02!9.58!MEOX2;;chr8:11561684..11561751,+!p1@GATA4!1.02!9.48!GATA4;;chr3:169381420..169381535,-!p1@MECOM!1.01!10.82!MECOM;;chr4:149363494..149363543,-!p1@NR3C2!1.01!9.27!NR3C2;;chr1:199996702..199996732,+!p5@NR5A2!1.01!9.27!NR5A2;;chr10:51572408..51572454,+!p3@NCOA4!1.00!53.17!NCOA4;;chr5:92918919..92918942,+!p1@NR2F1!1.00!41.53!NR2F1;;chr20:62365987..62365998,+!p8@ZGPAT!1.00!9.07!ZGPAT;;chr19:54058073..54058088,+!p1@ZNF331!1.00!8.96!ZNF331;;chr2:46524537..46524553,+!p1@EPAS1!0.99!891.20!EPAS1;;chr1:200011711..200011752,+!p3@NR5A2!0.99!8.76!NR5A2;;chr16:51185318..51185348,-!p2@SALL1!0.99!8.76!SALL1;;chr15:60884706..60884743,-!p1@RORA!0.98!45.65!RORA;;chr10:94449703..94449718,+!p1@HHEX!0.98!34.11!HHEX;;chr2:85981107..85981120,+!p3@ATOH8!0.98!8.66!ATOH8;;chrY:2803415..2803468,+!p1@ZFY!0.98!8.55!ZFY;;chr3:187463179..187463201,-!p2@BCL6!0.97!35.76!BCL6;;chr17:45928521..45928539,-!p1@SP6!0.97!8.35!SP6;;chr17:17726907..17726958,-!p2@SREBF1!0.96!51.52!SREBF1;;chr7:1577111..1577132,+!p4@MAFK!0.96!9.07!MAFK;;chr12:115121962..115121987,-!p1@TBX3!0.95!69.45!TBX3;;chr12:100897130..100897149,+!p3@NR1H4!0.95!7.93!NR1H4;;chr7:27183291..27183324,-!p1@HOXA5!0.95!7.93!HOXA5;;chr7:27183263..27183284,-!p2@HOXA5!0.95!7.83!HOXA5;;chr11:47279504..47279563,+!p1@NR1H3!0.94!18.03!NR1H3;;chr17:26694979..26695007,-!p4@SEBOX!0.94!7.73!SEBOX;;chrX:70316072..70316085,+!p4@FOXO4!0.94!7.73!FOXO4;;chr12:19556960..19556982,+!p10@AEBP2!0.94!7.63!AEBP2;;chr4:149363475..149363492,-!p2@NR3C2!0.94!7.63!NR3C2;;chr17:59477197..59477212,+!p2@TBX2!0.93!13.19!TBX2;;chr6:126221034..126221056,+!p13@NCOA7!0.93!7.52!NCOA7;;chr6:10419768..10419819,-!p6@TFAP2A!0.93!7.42!TFAP2A;;chr8:102504979..102505010,+!p2@GRHL2!0.93!7.42!GRHL2;;chrX:66763914..66763933,+!p3@AR!0.93!7.42!AR;;chr7:113726357..113726443,+!p1@FOXP2!0.92!12.78!FOXP2;;chr3:126076264..126076305,-!p2@KLF15!0.92!10.51!KLF15;;chr6:1389789..1389821,+!p1@FOXF2!0.92!10.10!FOXF2;;chr12:115122005..115122016,-!p3@TBX3!0.92!8.76!TBX3;;chr3:25469724..25469773,+!p1@RARB!0.91!10.51!RARB;;chr6:28321971..28321995,-!p1@ZNF323!0.91!7.21!ZNF323;;chr17:15942958..15942973,-!p10@NCOR1!0.91!7.11!NCOR1;;chr8:48650715..48650735,-!p1@CEBPD!0.90!925.00!CEBPD;;chr7:99621306..99621328,+!p5@ZKSCAN1!0.90!7.01!ZKSCAN1;;chr18:42277095..42277130,+!p8@SETBP1!0.90!7.01!SETBP1;;chrX:70316101..70316112,+!p5@FOXO4!0.90!7.01!FOXO4;;chr10:35484053..35484076,+!p1@CREM!0.89!17.52!CREM;;chr20:50159198..50159299,-!p1@NFATC2!0.89!10.20!NFATC2;;chr6:151977817..151977828,+!p12@ESR1!0.89!6.80!ESR1;;chr6:10413188..10413249,-!p7@TFAP2A!0.89!6.70!TFAP2A;;chr17:74137321..74137337,-!p1@FOXJ1!0.89!6.70!FOXJ1;;chr12:52445218..52445237,+!p1@NR4A1!0.88!88.51!NR4A1;;chr2:70142232..70142251,+!p1@MXD1!0.88!38.64!MXD1;;chr12:100867736..100867750,+!p4@NR1H4!0.88!6.59!NR1H4;;chr5:2751785..2751808,-!p2@IRX2!0.88!6.59!IRX2;;chr7:27192185..27192209,-!p1@HOXA3!0.88!6.59!HOXA3;;chr16:79633894..79633954,-!p3@MAF!0.87!12.88!MAF;;chr2:242556880..242556899,-!p5@THAP4!0.87!6.49!THAP4;;chr1:161207964..161207975,-!p3@NR1I3!0.87!6.49!NR1I3;;chr5:174151612..174151633,+!p2@MSX2!0.87!6.39!MSX2;;chr9:22447422..22447483,+!p1@DMRTA1!0.87!6.39!DMRTA1;;chr3:128206762..128206781,-!p2@GATA2!0.86!41.42!GATA2;;chr11:61520075..61520136,+!p1@C11orf9!0.86!13.91!C11orf9;;chr17:59477275..59477286,+!p3@TBX2!0.86!8.55!TBX2;;chr2:180427304..180427323,-!p7@ZNF385B!0.86!6.29!ZNF385B;;chr5:142814241..142814278,-!p12@NR3C1!0.86!6.29!NR3C1;;chr11:113930401..113930422,+!p3@ZBTB16!0.86!6.18!ZBTB16;;chr20:22566120..22566136,-!p4@FOXA2!0.86!6.18!FOXA2;;chrX:106960285..106960299,-!p1@TSC22D3!0.85!174.45!TSC22D3;;chr3:24536253..24536328,-!p1@THRB!0.85!12.06!THRB;;chr10:31288398..31288455,-!p2@ZNF438!0.85!7.21!ZNF438;;chr7:44143925..44143970,+!p1@AEBP1!0.84!141.17!AEBP1;;chr22:38598086..38598105,+!p1@MAFF!0.84!68.01!MAFF;;chr2:114036488..114036504,-!p1@PAX8!0.84!5.98!PAX8;;chr12:24102576..24102623,-!p2@SOX5!0.84!5.87!SOX5;;chr1:40367668..40367684,-!p2@MYCL1!0.84!5.87!MYCL1;;chr6:53013605..53013616,-!p2@GCM1!0.84!5.87!GCM1;;chr18:6414884..6414942,-!p1@L3MBTL4!0.83!7.32!L3MBTL4;;chr3:126072967..126072981,-!p4@KLF15!0.83!5.77!KLF15;;chr19:54041669..54041697,+!p2@ZNF331!0.83!5.77!ZNF331;;chr5:88178983..88179012,-!p1@MEF2C!0.82!46.27!MEF2C;;chr4:87857433..87857472,+!p9@A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R3C1;;chr18:53255415..53255491,-!p1@TCF4!0.36!16.90!TCF4;;chr7:17338239..17338262,+!p2@AHR!0.36!14.73!AHR;;chr1:203764742..203764769,+!p1@ZC3H11A!0.36!12.26!ZC3H11A;;chr10:31320777..31320834,-!p1@ZNF438!0.36!9.99!ZNF438;;chr12:96588279..96588299,+!p4@ELK3!0.36!9.17!ELK3;;chr9:99616768..99616819,-!p1@ZNF782!0.36!8.96!ZNF782;;chr12:46123050..46123129,+!p2@ARID2!0.36!5.87!ARID2;;chr5:139493727..139493766,+!p4@PURA!0.36!5.36!PURA;;chr19:20188776..20188826,+!p1@ZNF90!0.36!4.95!ZNF90;;chr10:94449675..94449694,+!p2@HHEX!0.36!4.84!HHEX;;chr19:52430697..52430749,+!p1@ZNF613!0.36!4.22!ZNF613;;chr13:36871902..36872023,-!p1@CCDC169-SOHLH2,p1@CCDC169,p1@SOHLH2!0.36!3.81!SOHLH2;;chr9:2017383..2017417,+!p5@SMARCA2!0.36!3.81!SMARCA2;;chr3:114866124..114866149,-!p5@ZBTB20!0.36!2.78!ZBTB20;;chr3:168864315..168864339,-!p2@MECOM!0.36!2.68!MECOM;;chr12:432372..432377,-!p3@KDM5A!0.36!2.58!KDM5A;;chr8:71316222..71316259,-!p5@NCOA2!0.36!2.58!NCOA2;;chr2:61108771..61108789,+!p4@REL!0.36!2.37!REL;;chr17:46688334..46688385,-!p1@HOXB7!0.36!2.27!HOXB7;;chr19:49140595..49140607,-!p3@DBP!0.36!2.16!DBP;;chr4:87968291..87968314,+!p14@AFF1!0.36!2.06!AFF1;;chr2:61108808..61108821,+!p3@REL!0.36!1.85!REL;;chr8:145535378..145535420,+!p4@HSF1!0.36!1.85!HSF1;;chr8:80680024..80680046,-!p2@HEY1!0.36!1.55!HEY1;;chr19:18392422..18392440,-!p1@JUND!0.35!285.22!JUND;;chr5:131826457..131826514,-!p1@IRF1!0.35!80.48!IRF1;;chr15:42783305..42783348,-!p1@ZFP106!0.35!31.84!ZFP106;;chr10:38299546..38299686,+!p1@ZNF33A!0.35!28.85!ZNF33A;;chr6:126112074..126112144,+!p1@NCOA7!0.35!26.48!NCOA7;;chr4:26322419..26322479,+!p2@RBPJ!0.35!23.91!RBPJ;;chr16:69599899..69599919,+!p2@NFAT5!0.35!22.88!NFAT5;;chr2:97202480..97202499,+!p1@ARID5A!0.35!20.09!ARID5A;;chr1:59249688..59249703,-!p3@JUN!0.35!11.44!JUN;;chr8:28243661..28243709,-!p1@ZNF395!0.35!11.13!ZNF395;;chr17:47439568..47439641,-!p2@ZNF652!0.35!11.03!ZNF652;;chr2:178128149..178128198,-!p2@NFE2L2!0.35!10.20!NFE2L2;;chr18:72922777..72922808,+!p2@TSHZ1!0.35!8.86!TSHZ1;;chr16:30546141..30546240,-!p1@ZNF747,p2@ZNF768!0.35!7.42!ZNF747;;chr11:65430554..65430579,-!p3@RELA!0.35!4.43!RELA;;chr1:91487836..91487854,-!p3@ZNF644!0.35!3.92!ZNF644;;chr6:91006518..91006570,-!p1@BACH2!0.35!3.92!BACH2;;chr9:102584262..102584276,+!p1@NR4A3!0.35!3.81!NR4A3;;chr18:47814186..47814232,-!p2@CXXC1!0.35!3.40!CXXC1;;chr9:2017420..2017433,+!p6@SMARCA2!0.35!3.19!SMARCA2;;chr2:208030886..208030917,-!p4@KLF7!0.35!3.19!KLF7;;chr5:142784101..142784130,-!p4@NR3C1!0.35!2.99!NR3C1;;chr19:12444440..12444455,-!p1@ZNF563!0.35!2.78!ZNF563;;chr15:96875657..96875760,+!p14@NR2F2!0.35!2.58!NR2F2;;chr18:42260059..42260132,+!p1@SETBP1!0.35!2.58!SETBP1;;chr19:57078972..57079027,+!p2@ZNF470!0.35!2.37!ZNF470;;chr2:145282041..145282092,-!p8@ZEB2!0.35!2.27!ZEB2;;chr17:46655704..46655718,-!p2@HOXB4!0.35!2.27!HOXB4;;chr6:168227611..168227624,+!p2@MLLT4!0.35!2.16!MLLT4;;chr19:18391652..18391669,-!p8@JUND!0.35!2.06!JUND;;chr3:170075124..170075136,+!p4@SKIL!0.35!2.06!SKIL;;chr10:48355030..48355090,+!p1@ZNF488!0.35!1.85!ZNF488;;chr8:124286761..124286773,-!p4@ZHX1!0.35!1.75!ZHX1;;chr5:124080203..124080258,-!p5@ZNF608!0.35!1.55!ZNF608;;chr17:38497662..38497713,+!p4@RARA!0.35!1.55!RARA;;chr18:52989001..52989030,-!p10@TCF4!0.35!1.44!TCF4;;chr14:75746340..75746368,+!p3@FOS!0.35!1.24!FOS;;chr14:89029904..89029917,+!p5@ZC3H14!0.35!1.24!ZC3H14;;chr16:67198633..67198671,+!p1@HSF4!0.35!1.24!HSF4;;chr17:59477266..59477273,+!p6@TBX2!0.35!1.24!TBX2;;chr19:12444399..12444415,-!p5@ZNF563!0.35!1.24!ZNF563;;chr10:102505327..102505344,+!p1@PAX2!0.35!1.24!PAX2;;chr11:16627528..16627550,-!p7@SOX6!0.35!1.24!SOX6;;chr12:52448420..52448460,+!p5@NR4A1!0.35!1.24!NR4A1;;chr1:200008734..200008765,+!p2@NR5A2!0.35!1.24!NR5A2;;chr1:214161428..214161437,+!p6@PROX1!0.35!1.24!PROX1;;chr22:38380543..38380569,-!p1@SOX10!0.35!1.24!SOX10;;chr2:176973498..176973524,+!p1@HOXD10!0.35!1.24!HOXD10;;chr2:85981008..85981025,+!p7@ATOH8!0.35!1.24!ATOH8;;chr2:85981027..85981047,+!p8@ATOH8!0.35!1.24!ATOH8;;chr3:185784049..185784050,-!p7@ETV5!0.35!1.24!ETV5;;chr3:69915369..69915381,+!p4@MITF!0.35!1.24!MITF;;chr4:111558135..111558198,-!p2@PITX2!0.35!1.24!PITX2;;chr5:134369879..134369898,-!p2@PITX1!0.35!1.24!PITX1;;chr5:142814316..142814335,-!p18@NR3C1!0.35!1.24!NR3C1;;chr6:126070748..126070768,+!p2@HEY2!0.35!1.24!HEY2;;chr7:73038889..73038905,-!p3@MLXIPL!0.35!1.24!MLXIPL;;chr8:102504932..102504952,+!p4@GRHL2!0.35!1.24!GRHL2;;chrX:131622988..131623006,-!p8@MBNL3!0.35!1.24!MBNL3;;chr9:22446814..22446830,+!p4@DMRTA1!0.35!1.24!DMRTA1;;chr9:73028786..73028797,-!p11@KLF9!0.35!1.24!KLF9;;chrX:57619083..57619113,+!p1@ZXDB!0.35!1.24!ZXDB;;chr9:14314946..14314983,-!p8@NFIB!0.35!1.24!NFIB;;chr1:59249707..59249727,-!p1@JUN!0.34!82.54!JUN;;chr1:37940170..37940190,+!p1@ZC3H12A!0.34!23.91!ZC3H12A;;chr10:124768300..124768334,-!p1@IKZF5!0.34!23.80!IKZF5;;chr17:47439437..47439533,-!p1@ZNF652!0.34!15.56!ZNF652;;chr2:148778590..148778647,+!p2@MBD5!0.34!14.53!MBD5;;chr16:1464688..1464728,-!p1@UNKL!0.34!13.09!UNKL;;chr19:56146352..56146420,+!p2@ZNF580,p2@ZNF581!0.34!12.57!ZNF580;;chr19:19976683..19976709,+!p1@ZNF253!0.34!8.04!ZNF253;;chr4:83821835..83821896,+!p1@THAP9!0.34!5.77!THAP9;;chr10:97890024..97890064,+!p2@ZNF518A!0.34!4.74!ZNF518A;;chr22:46546406..46546440,+!p1@PPARA!0.34!4.12!PPARA;;chr15:100106244..100106259,+!p2@MEF2A!0.34!3.92!MEF2A;;chr4:87928307..87928321,+!p8@AFF1!0.34!3.71!AFF1;;chr1:151043266..151043295,+!p2@GABPB2!0.34!3.50!GABPB2;;chr20:45142154..45142227,-!p1@ZNF334!0.34!3.19!ZNF334;;chr13:37494365..37494381,-!p1@SMAD9!0.34!2.68!SMAD9;;chr9:73028638..73028650,-!p7@KLF9!0.34!2.37!KLF9;;chr1:158985493..158985535,+!p4@IFI16!0.34!2.27!IFI16;;chr19:44037334..44037365,+!p2@ZNF575!0.34!2.16!ZNF575;;chr3:40547564..40547616,+!p1@ZNF620!0.34!2.06!ZNF620;;chr3:42947600..42947680,+!p1@ZNF662!0.34!2.06!ZNF662;;chr16:54964740..54964789,+!p1@IRX5!0.34!2.06!IRX5;;chr19:37341260..37341284,+!p2@ZNF345!0.34!1.96!ZNF345;;chr5:178287112..178287133,+!p4@ZNF354B!0.34!1.85!ZNF354B;;chr6:106546808..106546833,+!p3@PRDM1!0.34!1.75!PRDM1;;chr7:44143997..44144008,+!p3@AEBP1!0.34!1.75!AEBP1;;chr8:60031809..60031835,-!p4@TOX!0.34!1.75!TOX;;chr14:75746722..75746777,+!p2@FOS!0.34!1.75!FOS;;chr3:39195139..39195150,-!p3@CSRNP1!0.34!1.75!CSRNP1;;chr1:23696448..23696453,-!p5@ZNF436!0.34!1.65!ZNF436;;chr1:6684918..6684936,+!p2@THAP3!0.34!1.65!THAP3;;chr20:48807548..48807572,+!p14@CEBPB!0.34!1.65!CEBPB;;chr9:110250697..110250738,-!p2@KLF4!0.34!1.55!KLF4;;chr7:44143738..44143760,+!p4@AEBP1!0.34!1.44!AEBP1;;chr13:74707894..74707947,-!p6@KLF12!0.34!1.44!KLF12;;chr19:57183114..57183145,-!p1@ZNF835!0.34!1.44!ZNF835;;chr1:158979686..158979745,+!p1@IFI16!0.33!63.16!IFI16;;chr14:75894714..75894733,+!p1@JDP2!0.33!54.92!JDP2;;chr1:173991434..173991556,-!p1@RC3H1!0.33!23.49!RC3H1;;chr19:32836499..32836551,+!p1@ZNF507!0.33!20.61!ZNF507;;chr16:4366053..4366076,+!p@chr16:4366053..4366076,+!0.33!19.06!GLIS2;;chr11:615942..615957,-!p1@IRF7!0.33!17.83!IRF7;;chr8:48650697..48650708,-!p2@CEBPD!0.33!14.01!CEBPD;;chr19:11849700..11849803,-!p1@ZNF823!0.33!8.76!ZNF823;;chr11:128392273..128392308,-!p2@ETS1!0.33!7.52!ETS1;;chr3:141087393..141087426,+!p3@ZBTB38!0.33!7.01!ZBTB38;;chr4:38665866..38665878,+!p4@KLF3!0.33!5.56!KLF3;;chr17:38256877..38256900,-!p2@NR1D1!0.33!5.56!NR1D1;;chr19:54041382..54041437,+!p3@ZNF331!0.33!4.74!ZNF331;;chr8:123793860..123793921,+!p2@ZHX2!0.33!4.64!ZHX2;;chr19:926055..926068,+!p2@ARID3A!0.33!3.50!ARID3A;;chr2:157199008..157199023,-!p3@NR4A2!0.33!3.30!NR4A2;;chr5:76383070..76383117,-!p3@ZBED3!0.33!3.19!ZBED3;;chr9:2016724..2016752,+!p7@SMARCA2!0.33!2.99!SMARCA2;;chr20:62462566..62462631,-!p1@ZBTB46!0.33!2.89!ZBTB46;;chr19:12075844..12075880,+!p3@ZNF763!0.33!2.58!ZNF763;;chr6:28303901..28303944,-!p2@ZNF323!0.33!2.37!ZNF323;;chr1:8483849..8483868,-!p14@RERE!0.33!2.37!RERE;;chr8:72756667..72756736,-!p2@MSC!0.33!2.27!MSC;;chr1:221052700..221052730,+!p5@HLX!0.33!2.16!HLX;;chr7:137563905..137563916,-!p11@CREB3L2!0.33!1.96!CREB3L2;;chr2:46602879..46602899,+!p8@EPAS1!0.33!1.55!EPAS1;;chr3:141868230..141868250,-!p6@TFDP2!0.33!1.55!TFDP2;;chr1:170633262..170633285,+!p3@PRRX1!0.33!1.44!PRRX1;;chr1:203764689..203764700,+!p3@ZC3H11A!0.33!1.34!ZC3H11A;;chr10:63808979..63808990,+!p8@ARID5B!0.33!1.34!ARID5B;;chr5:92918860..92918871,+!p10@NR2F1!0.33!1.34!NR2F1;;chr5:121465234..121465263,+!p1@ZNF474!0.33!1.13!ZNF474;;chr5:172483414..172483425,+!p3@C5orf41!0.33!1.13!CREBRF;;chr7:27224795..27224840,-!p2@HOXA11!0.33!1.13!HOXA11;;chr19:50435704..50435718,+!p11@ATF5!0.33!1.13!ATF5;;chr1:119457098..119457116,-!p12@TBX15!0.33!1.13!TBX15;; 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Revision as of 19:12, 29 June 2012
Name: | SABiosciences XpressRef Human Universal Total RNA, pool1 |
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Species: | Human (Homo sapiens) |
Library ID: | {{{library_id}}} |
Sample type: | {{{sample_category}}} |
Genomic View: | UCSC |
CAGEd-oPOSSUM: | link |
Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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Download raw sequence, BAM & CTSS | ||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
no result for this sample
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs10610
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs10610
Novel motif | Logo | P-value |
---|---|---|
1 | 1 | 0.548 |
10 | 10 | 0.128 |
100 | 100 | 0.874 |
101 | 101 | 0.71 |
102 | 102 | 0.0159 |
103 | 103 | 0.635 |
104 | 104 | 0.964 |
105 | 105 | 0.605 |
106 | 106 | 0.227 |
107 | 107 | 0.042 |
108 | 108 | 0.878 |
109 | 109 | 0.572 |
11 | 11 | 0.798 |
110 | 110 | 0.67 |
111 | 111 | 0.0234 |
112 | 112 | 0.341 |
113 | 113 | 0.081 |
114 | 114 | 0.447 |
115 | 115 | 0.988 |
116 | 116 | 0.622 |
117 | 117 | 0.0937 |
118 | 118 | 0.631 |
119 | 119 | 0.409 |
12 | 12 | 0.52 |
120 | 120 | 0.398 |
121 | 121 | 0.674 |
122 | 122 | 0.927 |
123 | 123 | 0.39 |
124 | 124 | 0.435 |
125 | 125 | 0.0634 |
126 | 126 | 0.239 |
127 | 127 | 0.0185 |
128 | 128 | 0.692 |
129 | 129 | 0.899 |
13 | 13 | 0.567 |
130 | 130 | 0.487 |
131 | 131 | 0.0467 |
132 | 132 | 0.304 |
133 | 133 | 0.357 |
134 | 134 | 0.27 |
135 | 135 | 0.17 |
136 | 136 | 0.632 |
137 | 137 | 0.712 |
138 | 138 | 0.58 |
139 | 139 | 0.285 |
14 | 14 | 0.497 |
140 | 140 | 0.738 |
141 | 141 | 0.628 |
142 | 142 | 0.959 |
143 | 143 | 0.00244 |
144 | 144 | 0.124 |
145 | 145 | 0.47 |
146 | 146 | 0.0308 |
147 | 147 | 0.943 |
148 | 148 | 0.796 |
149 | 149 | 0.414 |
15 | 15 | 0.545 |
150 | 150 | 0.864 |
151 | 151 | 0.493 |
152 | 152 | 0.114 |
153 | 153 | 0.79 |
154 | 154 | 0.211 |
155 | 155 | 0.603 |
156 | 156 | 0.605 |
157 | 157 | 0.906 |
158 | 158 | 0.4 |
159 | 159 | 0.526 |
16 | 16 | 0.613 |
160 | 160 | 0.667 |
161 | 161 | 0.986 |
162 | 162 | 0.972 |
163 | 163 | 0.969 |
164 | 164 | 0.27 |
165 | 165 | 0.0169 |
166 | 166 | 0.719 |
167 | 167 | 0.0923 |
168 | 168 | 0.353 |
169 | 169 | 0.124 |
17 | 17 | 0.814 |
18 | 18 | 0.016 |
19 | 19 | 0.0256 |
2 | 2 | 0.0545 |
20 | 20 | 0.223 |
21 | 21 | 0.269 |
22 | 22 | 0.171 |
23 | 23 | 0.11 |
24 | 24 | 0.897 |
25 | 25 | 0.618 |
26 | 26 | 0.83 |
27 | 27 | 0.621 |
28 | 28 | 0.752 |
29 | 29 | 0.0831 |
3 | 3 | 0.857 |
30 | 30 | 0.0432 |
31 | 31 | 0.727 |
32 | 32 | 0.825 |
33 | 33 | 0.542 |
34 | 34 | 0.161 |
35 | 35 | 0.419 |
36 | 36 | 0.143 |
37 | 37 | 0.743 |
38 | 38 | 0.685 |
39 | 39 | 0.115 |
4 | 4 | 0.0559 |
40 | 40 | 0.919 |
41 | 41 | 0.0236 |
42 | 42 | 0.907 |
43 | 43 | 0.984 |
44 | 44 | 0.581 |
45 | 45 | 0.0548 |
46 | 46 | 0.493 |
47 | 47 | 0.592 |
48 | 48 | 0.814 |
49 | 49 | 0.912 |
5 | 5 | 0.953 |
50 | 50 | 0.275 |
51 | 51 | 0.803 |
52 | 52 | 0.0638 |
53 | 53 | 0.714 |
54 | 54 | 0.755 |
55 | 55 | 0.809 |
56 | 56 | 0.671 |
57 | 57 | 0.175 |
58 | 58 | 0.64 |
59 | 59 | 0.499 |
6 | 6 | 0.34 |
60 | 60 | 0.214 |
61 | 61 | 0.431 |
62 | 62 | 0.959 |
63 | 63 | 0.441 |
64 | 64 | 0.749 |
65 | 65 | 0.567 |
66 | 66 | 0.0925 |
67 | 67 | 0.128 |
68 | 68 | 0.186 |
69 | 69 | 0.428 |
7 | 7 | 0.415 |
70 | 70 | 0.243 |
71 | 71 | 0.601 |
72 | 72 | 0.403 |
73 | 73 | 0.577 |
74 | 74 | 0.418 |
75 | 75 | 0.0802 |
76 | 76 | 0.0106 |
77 | 77 | 0.00569 |
78 | 78 | 0.505 |
79 | 79 | 0.448 |
8 | 8 | 0.916 |
80 | 80 | 0.116 |
81 | 81 | 0.419 |
82 | 82 | 0.839 |
83 | 83 | 0.743 |
84 | 84 | 0.751 |
85 | 85 | 0.419 |
86 | 86 | 0.991 |
87 | 87 | 0.324 |
88 | 88 | 0.405 |
89 | 89 | 0.783 |
9 | 9 | 0.327 |
90 | 90 | 0.617 |
91 | 91 | 0.475 |
92 | 92 | 0.67 |
93 | 93 | 0.983 |
94 | 94 | 0.0652 |
95 | 95 | 0.188 |
96 | 96 | 0.849 |
97 | 97 | 0.218 |
98 | 98 | 0.35 |
99 | 99 | 0.142 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs10610
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
FF:0000004 tissue sample
FF:0000210 human sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
UBERON: Anatomy
0000479 (tissue)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0001062 (anatomical entity)
FF: FANTOM5
NA
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
NA