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MacroAPE 1083:Motif GCACNT: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!01;0;0;6736;0!02;0;6736;0;0!03;6736;0;0;0!04;0;6736;0;0!05;1684;1684;1684;1684!06;0;0;0;6736 |macroape_1083_sample_pvalues=11376-118A8;0.4168...")
 
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C8;0.675354!10789-110H6;0.632127!10828-111C9;0.371168!10788-110H5;0.482352!10792-110H9;0.752862!10765-110E9;0.800493!10829-111D1;0.380147!10830-111D2;0.814684!10831-111D3;0.294425!10832-111D4;0.507488!10833-111D5;0.366105!10764-110E8;0.451707!10770-110F5;0.532886!10399-106A3;0.254248!10400-106A4;0.5279!10405-106A9;0.495966!10834-111D6;0.54607!10835-111D7;0.39742!10836-111D8;0.781513!10837-111D9;0.340868!10699-109G6;0.384052!10802-111A1;0.255349!10796-110I4;0.352307!10010-101C1;0.324683!10810-111A9;0.692865!10421-106C7;0.543325!10708-109H6;0.224816!12235-129G3;0.319876!12236-129G4;0.00131867!12237-129G5;0.330249!10167-103B5;0.0182804!10151-102I7;0.923663!10428-106D5;0.760803!10795-110I3;0.514244!10805-111A4;0.626085!10052-101G7;0.470956!10189-103D9;0.357246!10589-108D4;0.417647!10425-106D2;0.461932!10427-106D4;0.114615!10702-109G9;0.749055!10432-106D9;0.791701!10496-107C1;0.220071!10718-109I7;0.114599!10011-101C2;0.349493!10053-101G8;0.297469!10686-109F2;0.987105!10084-102B3;0.0906354!10012-101C3;0.85388!10085-102B4;0.88691!10482-107A5;0.918812!10419-106C5;0.286452!10080-102A8;0.216651!10760-110E4;0.217236!10709-109H7;0.326165!10710-109H8;0.452944!10703-109H1;0.285435!10719-109I8;0.659926!10642-109A3;0.420306!10177-103C6;0.21911!10164-103B2;0.937723!10173-103C2;0.869917!10166-103B4;0.876272!10083-102B2;0.958136!10188-103D8;0.988994!10552-107I3;0.98174!10553-107I4;0.945853!10013-101C4;0.0983406!10536-107G5;0.423716!10618-108G6;0.415252!10423-106C9;0.783843!10785-110H2;0.621741!12238-129G6;0.423036!12239-129G7;0.0595076!12240-129G8;0.373812!10416-106C2;0.0593495!10801-110I9;0.798893!10766-110F1;0.481082!10824-111C5;0.702798!10825-111C6;0.354103!10826-111C7;0.3594!10454-106G4;0.300771!10409-106B4;0.400761!10638-108I8;0.776573!10636-108I6;0.67932!10513-107D9;0.396335!10420-106C6;0.700304!10082-102B1;0.707318!10014-101C5;0.169031!10070-101I7;0.143471!10452-106G2;0.152597!10453-106G3;0.408212!10449-106F8;0.216748!10042-101F6;0.229181!10069-101I6;0.775963!10193-103E4;0.488872!10631-108I1;0.877972!10438-106E6;0.875508!10488-107B2;0.398109!10196-103E7;0.523867!10071-101I8;0.221437!10071-101I8;0.314511!10041-101F5;0.798023!10451-106G1;0.90506!10450-106F9;0.679862!10604-108F1;0.740293!10605-108F2;0.829244!10606-108F3;0.680429!10603-108E9;0.768909!10497-107C2;0.272648!10448-106F7;0.763922!10643-109A4;0.0441796!10426-106D3;0.21932!10431-106D8;0.394713!10197-103E8;0.570217!10443-106F2;0.211995!10815-111B5;0.270259!10816-111B6;0.841021!10817-111B7;0.78211!10015-101C6;0.789795!10410-106B5;0.256805!10054-101G9;0.850806!10758-110E2;0.27223!10711-109H9;0.258491!10040-101F4;0.372195!10470-106I2;0.860419!10415-106C1;0.34786!10198-103E9;0.137391!10614-108G2;0.185814!10612-108F9;0.15781!10549-107H9;0.332207!10615-108G3;0.388215!10487-107B1;0.373368!10433-106E1;0.40903!10688-109F4;0.977617!10444-106F3;0.610607!10444-106F3;0.240817!10485-107A8;0.208282!10413-106B8;0.0125123!10175-103C4;0.0558833!10161-103A8;0.800995!12131-128D7;0.688901!10624-108H3;0.452582!10712-109I1;0.709669!10205-103F7;0.683249!10206-103F8;0.871517!10207-103F9;0.780989!10050-101G5;0.807552!10051-101G6;0.108985!10016-101C7;0.607685!10046-101G1;0.889338!10778-110G4;0.790327!10633-108I3;0.853471!10818-111B8;0.733229!10819-111B9;0.722149!10820-111C1;0.678387!10484-107A7;0.809857!10808-111A7;0.58029!10169-103B7;0.274669!10153-102I9;0.816842!13425-144D5;0.820946!13433-144E4;0.739545!13437-144E8;0.720168!11904-125F5;0.720369!11905-125F6;0.584492!10039-101F3;0.427967!10791-110H8;0.912621!10017-101C8;0.866235!10045-101F9;0.0408384!10509-107D5;0.138398!10839-111E2;0.717859!10692-109F8;0.537891!10079-102A7;0.444228!10078-102A6;0.772646!10721-110A1;0.946308!10569-108B2;0.374466!10570-108B3;0.919968!10571-108B4;0.851668!10647-109A8;0.881306!10752-110D5;0.643167!10782-110G8;0.69211!10726-110A6;0.00576792!10018-101C9;0.043219!10086-102B5;0.797877!10182-103D2;0.666443!10165-103B3;0.759112!10499-107C4;0.780326!10408-106B3;0.295758!10019-101D1;0.192707!10068-101I5;0.277989!10075-102A3;0.350485!10077-102A5;0.119071!10727-110A7;0.66525!10775-110G1;0.802182!10412-106B7;0.978076!12231-129F8;0.0514971!12232-129F9;0.244204!12233-129G1;0.659489!12234-129G2;0.578255!10414-106B9;0.315168!10170-103B8;0.175854!10183-103D3;0.777112!10150-102I6;0.815355!10174-103C3;0.832749!10155-103A2;0.865926!10038-101F2;0.978883!10838-111E1;0.973117!10759-110E3;0.689863!10514-107E1;0.696824!10465-106H6;0.65636!10691-109F7;0.877246!10843-111E6;0.831935!10844-111E7;0.83311!11747-123G1;0.939682!11748-123G2;0.117625!11749-123G3;0.184359!11750-123G4;0.652508!11751-123G5;0.989751!11840-124H4;0.677656!11752-123G6;0.965106!11753-123G7;0.908914!11754-123G8;0.574621!11755-123G9;0.152818!11756-123H1;0.0396041!11833-124G6;0.711002!11760-123H5;0.618921!11836-124G9;0.567431!11758-123H3;0.680553!11835-124G8;0.570881!11762-123H7;0.643574!11838-124H2;0.699064!11757-123H2;0.323284!11759-123H4;0.998332!11761-123H6;0.725865!11842-124H6;0.400381!11837-124H1;0.543369!10568-108B1;0.771991!13230-141I8;0.0158037!13231-141I9;0.355637!10696-109G3;0.451715!10493-107B7;0.159468!10494-107B8;0.83149!10850-111F4;0.0627334!10851-111F5;0.443441!10852-111F6;0.372109!10853-111F7;0.645233!10854-111F8;0.697846!10855-111F9;0.7395!10856-111G1;0.0646613!10847-111F1;0.0478072!10846-111E9;0.817455!10848-111F2;0.537069!10845-111E8;0.820313!10857-111G2;0.9875!10858-111G3;0.487024!10156-103A3;0.569966!11901-125F2;0.754924!11902-125F3;0.342659!11903-125F4;0.324309!10689-109F5;0.376626!10648-109A9;0.0743057!10784-110H1;0.862668!10744-110C6;0.179512!10772-110F7;0.325808!10474-106I6;0.566734!10600-108E6;0.375438!10684-109E9;0.0271114!12226-129F3;0.000912842!12227-129F4;0.0466491!10508-107D4;0.0137225!10539-107G8;0.32301!10607-108F4;0.0917578!10555-107I6;0.188222!10774-110F9;0.11895!10637-108I7;0.144423!10663-109C6;0.566269!10728-110A8;0.372855!10729-110A9;0.147985!10430-106D7;0.756167!10730-110B1;0.981646!10813-111B3;0.693692!10812-111B2;0.254922!10037-101F1;0.0321684!10172-103C1;0.997267!10163-103B1;0.801173!10076-102A4;0.795732!10073-102A1;0.818039!10036-101E9;0.573198!10195-103E6;0.94309!10277-104E7;0.861105!10434-106E2;0.763191!10550-107I1;0.552434!10545-107H5;0.349396!10544-107H4;0.542621!10704-109H2;0.149862!10510-107D6;0.121938!10558-107I9;0.359284!10020-101D2;0.0809932!10732-110B3;0.442833!10049-101G4;0.505898!10698-109G5;0.0772679!10437-106E5;0.618416!10417-106C3;0.237365!10035-101E8;0.0429031!10171-103B9;0.920768!10157-103A4;0.703252!10034-101E7;0.862795!10072-101I9;0.935439!10199-103F1;0.650975!10200-103F2;0.0139479!10697-109G4;0.294603!10723-110A3;0.92615!10179-103C8;0.0305594!10160-103A7;0.933356!10180-103C9;0.993596!10162-103A9;0.350438!10021-101D3;0.371046!10840-111E3;0.317037!10706-109H4;0.892546!10033-101E6;0.0875369!10032-101E5;0.907244!10490-107B4;0.895168!10439-106E7;0.808585!10022-101D4;0.450494!10176-103C5;0.34812!10469-106I1;0.811814!10067-101I4;0.154772!10411-106B6;0.877635!10471-106I3;0.78221!10030-101E3;0.0420907!10475-106I7;0.516261!10787-110H4;0.39005!10477-106I9;0.588912!10695-109G2;0.225853!11771-123I7;0.137459!11772-123I8;0.243098!11773-123I9;0.0658936!10093-102C3;0.0962013!10442-106F1;0.000433252!10442-106F1;0.698946!10201-103F3;0.438779!10639-108I9;0.133106!11843-124H7;0.0370939!11841-124H5;0.993212!10693-109F9;0.16632!10436-106E4;0.425384!10483-107A6;0.38608!10282-104F3;0.312191!10023-101D5;0.370436!10066-101I3;0.262279!10065-101I2;0.786906!10800-110I8;0.436799!10610-108F7;0.876488!10841-111E4;0.704016!10541-107H1;0.432917!10842-111E5;0.391992!10562-108A4;0.513435!10024-101D6;0.336734!10064-101I1;0.0445546!10609-108F6;0.299184!10048-101G3;0.199066!10781-110G7;0.961245!10181-103D1;0.343783!10159-103A6;0.887439!10056-101H2;0.741671!10737-110B8;0.926354!10025-101D7;0.763363!10044-101F8;0.966226!10424-106D1;0.938593!10463-106H4;0.705219!10616-108G4;0.313264!10486-107A9;0.394552!10062-101H8;0.216788!10202-103F4;0.315025!10158-103A5;0.0154769!10441-106E9;0.790338!10031-101E4;0.265388!10063-101H9;0.982733!10063-101H9;0.7132!11763-123H8;0.340717!11765-123I1;0.532689!11768-123I4;0.521405!10807-111A6;0.64581!10790-110H7;0.110676!10798-110I6;0.224349!10786-110H3;0.12188!10591-108D6;0.440341!10593-108D8;0.397641!10590-108D5;0.0352489!10026-101D8;0.48582!10096-102C6;0.3988!10168-103B6;0.995086!10154-103A1;0.778915!10209-103G2;0.779278!10061-101H7;0.202532!10027-101D9;0.287305!10043-101F7;0.384624!10783-110G9;0.241581!10028-101E1;0.172231!10060-101H6;0.0121503!10203-103F5;0.115085!10059-101H5;0.155188!10047-101G2;0.19996!10029-101E2;0.0237188!10058-101H4;0.0920412!10418-106C4;0.193598!10492-107B6;0.204989!10694-109G1;0.744531!10797-110I5;0.278956!10057-101H3;0.680726!10100-102D1;0.303329!10055-101H1;0.55116!10204-103F6;0.557482!10191-103E2;0.425641!10563-108A5;0.587071
|name=motif_GCACNT
|name=motif_GCACNT
|tomtom_result=CBF1#MA0281.1;0;0.00185452;0.882752;0.478173;6;GCACAT;GCACGTGA;+!HIF1A::ARNT#MA0259.1;0;0.00234122;1.11442;0.478173;6;GCACAT;GCACGTCC;-!PHO4#MA0357.1;0;0.00234122;1.11442;0.478173;6;GCACAT;GCACGTGC;+!Myc#MA0147.1;1;0.00252072;1.19986;0.478173;6;GCACAT;CGCACGTGGC;+!DAL82#MA0291.1;2;0.00356412;1.69652;0.52184;6;GCACAT;GCGCACATT;-!Mycn#MA0104.2;1;0.00574455;2.73441;0.52184;6;GCACAT;CGCACGTGGC;+!h#MA0449.1;1;0.00598563;2.84916;0.52184;6;GCACAT;GGCACGTGCC;+!MYC::MAX#MA0059.1;2;0.0068895;3.2794;0.52184;6;GCACAT;GAGCACGTGGT;+!Ddit3::Cebpa#MA0019.1;6;0.00708541;3.37266;0.52184;6;GCACAT;GGGATTGCATCT;-!RTG3#MA0376.1;6;0.00715238;3.40453;0.52184;6;GCACAT;ATATTAGCACGTGCTTAGTC;+!twi#MA0249.1;2;0.011993;5.70866;0.800769;6;GCACAT;TCGCATATGTTG;+!TEA1#MA0405.1;2;0.0129769;6.177;0.800769;6;GCACAT;GCGGACAT;+!sna#MA0086.1;-1;0.0145748;6.9376;0.800769;5;GCACAT;CACCTG;-!Mycn#MA0104.2;-1;0.0145748;6.9376;0.800769;5;GCACAT;CACGTG;+!ZEB1#MA0103.1;-1;0.0151967;7.23363;0.800769;5;GCACAT;CACCTG;+!Arnt#MA0004.1;-1;0.0172357;8.20419;0.81739;5;GCACAT;CACGTG;-
}}
}}

Latest revision as of 14:21, 7 September 2012

Full Name: motif_GCACNT

Motif matrix
POACGT
010067360
020673600
036736000
040673600
051684168416841684
060006736

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
CBF1#MA0281.100.001854520.8827520.4781736GCACATGCACGTGA+
HIF1A::ARNT#MA0259.100.002341221.114420.4781736GCACATGCACGTCC-
PHO4#MA0357.100.002341221.114420.4781736GCACATGCACGTGC+
Myc#MA0147.110.002520721.199860.4781736GCACATCGCACGTGGC+
DAL82#MA0291.120.003564121.696520.521846GCACATGCGCACATT-
Mycn#MA0104.210.005744552.734410.521846GCACATCGCACGTGGC+
h#MA0449.110.005985632.849160.521846GCACATGGCACGTGCC+
MYC::MAX#MA0059.120.00688953.27940.521846GCACATGAGCACGTGGT+
Ddit3::Cebpa#MA0019.160.007085413.372660.521846GCACATGGGATTGCATCT-
RTG3#MA0376.160.007152383.404530.521846GCACATATATTAGCACGTGCTTAGTC+
twi#MA0249.120.0119935.708660.8007696GCACATTCGCATATGTTG+
TEA1#MA0405.120.01297696.1770.8007696GCACATGCGGACAT+
sna#MA0086.1-10.01457486.93760.8007695GCACATCACCTG-
Mycn#MA0104.2-10.01457486.93760.8007695GCACATCACGTG+
ZEB1#MA0103.1-10.01519677.233630.8007695GCACATCACCTG+
Arnt#MA0004.1-10.01723578.204190.817395GCACATCACGTG-
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