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MacroAPE 1083:HNF4A f1: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!1;773.4674379807423;126.11966246958585;753.4574685387211;208.06305261049357!2;121.34781276235032;53.310247458001015;1562.4387421949898;124.010...")
 
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12182-129A4;0.150795!12183-129A5;0.0993189!12184-129A6;0.0549645!10809-111A8;0.0695472!10597-108E3;0.145346!10717-109I6;0.909274!10455-106G5;0.0635019!10534-107G3;0.115701!10429-106D6;0.773903!10464-106H5;0.349601!10827-111C8;0.631349!10789-110H6;0.0437332!10828-111C9;0.119601!10788-110H5;0.996601!10792-110H9;0.148494!10765-110E9;0.52819!10829-111D1;0.0321116!10830-111D2;0.189697!10831-111D3;0.931628!10832-111D4;0.0455577!10833-111D5;0.465518!10764-110E8;0.183177!10770-110F5;0.0128873!10399-106A3;0.196514!10400-106A4;0.0418443!10405-106A9;0.0573361!10834-111D6;0.0723654!10835-111D7;0.00369347!10836-111D8;0.0748352!10837-111D9;0.0472869!10699-109G6;0.00940262!10802-111A1;0.380317!10796-110I4;0.404496!10010-101C1;2.98497e-16!10810-111A9;0.0553883!10421-106C7;0.980715!10708-109H6;0.728333!12235-129G3;0.26995!12236-129G4;0.996019!12237-129G5;0.103437!10167-103B5;0.945716!10151-102I7;0.0155904!10428-106D5;0.0124179!10795-110I3;0.00236414!10805-111A4;0.516603!10052-101G7;0.500855!10189-103D9;0.596368!10589-108D4;0.34509!10425-106D2;0.000203324!10427-106D4;0.00919324!10702-109G9;0.488574!10432-106D9;0.000773943!10496-107C1;0.0625229!10718-109I7;0.0027293!10011-101C2;0.504489!10053-101G8;0.451218!10686-109F2;0.0628207!10084-102B3;0.0822379!10012-101C3;0.751704!10085-102B4;0.0310889!10482-107A5;0.0118543!10419-106C5;0.952227!10080-102A8;0.799837!10760-110E4;0.040789!10709-109H7;0.0686183!10710-109H8;0.0738509!10703-109H1;0.000921973!10719-109I8;0.540303!10642-109A3;0.408608!10177-103C6;0.00162256!10164-103B2;0.0627085!10173-103C2;0.0281446!10166-103B4;0.0254373!10083-102B2;0.00911774!10188-103D8;0.0804091!10552-107I3;0.0267215!10553-107I4;0.0961998!10013-101C4;0.563317!10536-107G5;0.379037!10618-108G6;0.0152202!10423-106C9;0.0240224!10785-110H2;0.0325606!12238-129G6;0.0217921!12239-129G7;0.338605!12240-129G8;0.980382!10416-106C2;0.210704!10801-110I9;0.15768!10766-110F1;0.0622847!10824-111C5;0.0475214!10825-111C6;0.10561!10826-111C7;0.0993923!10454-106G4;0.114539!10409-106B4;0.0607841!10638-108I8;0.415636!10636-108I6;0.310716!10513-107D9;0.117244!10420-106C6;6.98726e-08!10082-102B1;0.809485!10014-101C5;1.12277e-06!10070-101I7;6.10571e-18!10452-106G2;5.71183e-08!10453-106G3;0.177014!10449-106F8;0.488465!10042-101F6;0.595049!10069-101I6;0.0920766!10193-103E4;0.081579!10631-108I1;0.157631!10438-106E6;0.710117!10488-107B2;0.0653861!10196-103E7;0.0170956!10071-101I8;0.647045!10071-101I8;3.5645e-07!10041-101F5;0.000798116!10451-106G1;0.456495!10450-106F9;0.341665!10604-108F1;0.977903!10605-108F2;0.495215!10606-108F3;0.321848!10603-108E9;0.571322!10497-107C2;0.460203!10448-106F7;0.0313059!10643-109A4;0.0115544!10426-106D3;0.0220718!10431-106D8;0.294227!10197-103E8;0.834077!10443-106F2;0.0391781!10815-111B5;0.911424!10816-111B6;0.0313924!10817-111B7;0.114976!10015-101C6;0.0322218!10410-106B5;0.543753!10054-101G9;0.0524866!10758-110E2;0.450896!10711-109H9;0.429027!10040-101F4;0.374721!10470-106I2;0.0101162!10415-106C1;0.039867!10198-103E9;0.188057!10614-108G2;0.00132141!10612-108F9;0.464883!10549-107H9;1.01274e-05!10615-108G3;0.476431!10487-107B1;0.363151!10433-106E1;0.144324!10688-109F4;0.883366!10444-106F3;0.0234917!10444-106F3;0.370296!10485-107A8;0.353859!10413-106B8;0.840243!10175-103C4;0.185218!10161-103A8;0.278722!12131-128D7;0.0635659!10624-108H3;0.00622675!10712-109I1;0.114281!10205-103F7;0.523822!10206-103F8;0.796892!10207-103F9;0.246377!10050-101G5;0.869633!10051-101G6;0.000627302!10016-101C7;0.00608829!10046-101G1;0.082688!10778-110G4;0.955545!10633-108I3;0.0180853!10818-111B8;1.34972e-07!10819-111B9;1.12851e-19!10820-111C1;7.85845e-19!10484-107A7;7.14302e-19!10808-111A7;0.000166513!10169-103B7;0.559705!10153-102I9;0.0271148!13425-144D5;0.0132849!13433-144E4;0.0298938!13437-144E8;0.242448!11904-125F5;0.114377!11905-125F6;0.128485!10039-101F3;0.012479!10791-110H8;0.00934538!10017-101C8;0.0940673!10045-101F9;1.01521e-09!10509-107D5;0.000142501!10839-111E2;0.378649!10692-109F8;0.824673!10079-102A7;0.324625!10078-102A6;0.0924757!10721-110A1;0.00284325!10569-108B2;0.758516!10570-108B3;0.963853!10571-108B4;0.650409!10647-109A8;0.521483!10752-110D5;0.196589!10782-110G8;0.922457!10726-110A6;0.460215!10018-101C9;0.484966!10086-102B5;9.52961e-32!10182-103D2;8.92073e-41!10165-103B3;0.0912228!10499-107C4;0.0999958!10408-106B3;2.20038e-06!10019-101D1;0.00902105!10068-101I5;0.855128!10075-102A3;0.078107!10077-102A5;0.672696!10727-110A7;0.424042!10775-110G1;0.478018!10412-106B7;0.399018!12231-129F8;0.568451!12232-129F9;0.00482139!12233-129G1;0.00784825!12234-129G2;0.000910825!10414-106B9;0.000349107!10170-103B8;0.330333!10183-103D3;0.0425936!10150-102I6;0.0361672!10174-103C3;0.0158256!10155-103A2;0.950862!10038-101F2;0.114196!10838-111E1;0.165098!10759-110E3;0.367581!10514-107E1;0.816528!10465-106H6;0.695494!10691-109F7;0.461497!10843-111E6;0.378724!10844-111E7;0.543086!11747-123G1;0.096725!11748-123G2;0.539872!11749-123G3;0.353676!11750-123G4;0.738232!11751-123G5;0.00264932!11840-124H4;0.35292!11752-123G6;0.536447!11753-123G7;0.0356619!11754-123G8;0.120566!11755-123G9;0.442657!11756-123H1;0.207051!11833-124G6;0.0317134!11760-123H5;0.0374377!11836-124G9;0.180368!11758-123H3;0.858291!11835-124G8;0.530406!11762-123H7;0.171738!11838-124H2;0.816422!11757-123H2;0.207643!11759-123H4;0.749798!11761-123H6;0.0147361!11842-124H6;0.110473!11837-124H1;0.0338879!10568-108B1;0.0675688!13230-141I8;0.890126!13231-141I9;0.461719!10696-109G3;0.347459!10493-107B7;1.14827e-06!10494-107B8;0.553758!10850-111F4;0.0526547!10851-111F5;0.751077!10852-111F6;0.156117!10853-111F7;0.830187!10854-111F8;0.688802!10855-111F9;0.193833!10856-111G1;0.0015006!10847-111F1;0.223619!10846-111E9;0.599059!10848-111F2;0.175511!10845-111E8;0.0340958!10857-111G2;0.00049868!10858-111G3;0.155675!10156-103A3;0.295214!11901-125F2;0.0128496!11902-125F3;0.833686!11903-125F4;0.566235!10689-109F5;0.935849!10648-109A9;0.539432!10784-110H1;0.0253815!10744-110C6;0.335314!10772-110F7;0.789291!10474-106I6;0.211273!10600-108E6;0.981786!10684-109E9;0.257486!12226-129F3;0.0429951!12227-129F4;0.210014!10508-107D4;0.0542587!10539-107G8;0.10695!10607-108F4;0.115873!10555-107I6;0.722486!10774-110F9;0.243185!10637-108I7;0.198206!10663-109C6;0.0139748!10728-110A8;0.0983765!10729-110A9;0.424258!10430-106D7;0.0525744!10730-110B1;0.544954!10813-111B3;0.693482!10812-111B2;0.00250574!10037-101F1;0.641928!10172-103C1;0.0100969!10163-103B1;0.0135832!10076-102A4;0.0124035!10073-102A1;0.0214302!10036-101E9;0.00257262!10195-103E6;0.0190602!10277-104E7;0.0117424!10434-106E2;0.0708349!10550-107I1;0.769225!10545-107H5;0.803145!10544-107H4;0.0712458!10704-109H2;0.420118!10510-107D6;0.0126434!10558-107I9;0.0156901!10020-101D2;0.0338772!10732-110B3;0.560451!10049-101G4;0.0646306!10698-109G5;0.0382423!10437-106E5;0.185702!10417-106C3;0.122705!10035-101E8;0.0184282!10171-103B9;0.0128151!10157-103A4;0.0445885!10034-101E7;0.0165333!10072-101I9;0.0121736!10199-103F1;0.00168544!10200-103F2;0.324738!10697-109G4;0.139036!10723-110A3;0.0661882!10179-103C8;0.779425!10160-103A7;0.196832!10180-103C9;0.12569!10162-103A9;0.133351!10021-101D3;0.0260659!10840-111E3;0.640428!10706-109H4;0.719263!10033-101E6;0.392815!10032-101E5;0.0460315!10490-107B4;0.0206872!10439-106E7;0.117859!10022-101D4;0.0987281!10176-103C5;0.578492!10469-106I1;0.0195263!10067-101I4;0.0312346!10411-106B6;0.783625!10471-106I3;0.00348501!10030-101E3;0.000608954!10475-106I7;0.305006!10787-110H4;0.802828!10477-106I9;0.154904!10695-109G2;0.596099!11771-123I7;0.080229!11772-123I8;0.768306!11773-123I9;0.662803!10093-102C3;0.00709409!10442-106F1;0.443911!10442-106F1;0.462917!10201-103F3;0.165888!10639-108I9;0.727222!11843-124H7;0.642532!11841-124H5;0.638221!10693-109F9;0.269493!10436-106E4;0.243409!10483-107A6;0.000742234!10282-104F3;7.15546e-20!10023-101D5;4.56875e-05!10066-101I3;0.0284056!10065-101I2;0.167521!10800-110I8;0.546962!10610-108F7;0.370664!10841-111E4;0.321662!10541-107H1;0.271969!10842-111E5;0.46085!10562-108A4;0.227544!10024-101D6;0.0979633!10064-101I1;1.37707e-34!10609-108F6;1.96652e-19!10048-101G3;0.29015!10781-110G7;0.143316!10181-103D1;0.518643!10159-103A6;0.342772!10056-101H2;0.190495!10737-110B8;0.0840303!10025-101D7;0.00412026!10044-101F8;0.556545!10424-106D1;0.804267!10463-106H4;0.804572!10616-108G4;0.618679!10486-107A9;0.0813895!10062-101H8;0.287827!10202-103F4;0.0739425!10158-103A5;0.490688!10441-106E9;0.310977!10031-101E4;0.373051!10063-101H9;0.0331509!10063-101H9;0.000592888!11763-123H8;1.40311e-07!11765-123I1;0.480802!11768-123I4;0.985912!10807-111A6;0.867034!10790-110H7;0.0137911!10798-110I6;0.0351572!10786-110H3;0.276053!10591-108D6;0.0120288!10593-108D8;0.0420538!10590-108D5;0.384844!10026-101D8;0.136159!10096-102C6;0.55098!10168-103B6;0.507978!10154-103A1;0.111975!10209-103G2;0.0597234!10061-101H7;0.133691!10027-101D9;0.745!10043-101F7;0.105684!10783-110G9;0.13171!10028-101E1;0.475698!10060-101H6;0.493977!10203-103F5;0.718988!10059-101H5;0.0215685!10047-101G2;0.0845259!10029-101E2;0.617988!10058-101H4;0.317113!10418-106C4;0.88379!10492-107B6;0.43362!10694-109G1;0.568665!10797-110I5;0.0976265!10057-101H3;1.86075e-06!10100-102D1;0.360341!10055-101H1;0.0545341!10204-103F6;0.237642!10191-103E2;0.519213!10563-108A5;0.489244
|name=HNF4A_f1
|name=HNF4A_f1
|tomtom_result=HNF4A#MA0114.1;0;3.45072e-17;1.64254e-14;3.27385e-14;13;AGGCCAAAGTCCA;AGGCCAAAGGTCA;+!NR2F1#MA0017.1;1;2.82229e-10;1.34341e-07;1.33882e-07;13;AGGCCAAAGTCCA;AGGTTCAAAGGTCA;-!PPARG::RXRA#MA0065.2;2;3.67674e-08;1.75013e-05;1.16276e-05;13;AGGCCAAAGTCCA;GTAGGGCAAAGGTCA;+!PPARG::RXRA#MA0065.2;4;6.14959e-06;0.0029272;0.0014586;13;AGGCCAAAGTCCA;CTAGGGGTCAAAGGTCATCG;+!NR1H2::RXRA#MA0115.1;2;2.05155e-05;0.00976538;0.00389279;13;AGGCCAAAGTCCA;AAAGGTCAAAGGTCAAC;+!Esrrb#MA0141.1;-1;0.000429769;0.20457;0.0679568;12;AGGCCAAAGTCCA;AGCTCAAGGTCA;+!pan#MA0237.1;-1;0.00176695;0.841068;0.239483;8;AGGCCAAAGTCCA;GATCAAAG;-!GAL4#MA0299.1;1;0.00297436;1.4158;0.352738;13;AGGCCAAAGTCCA;CGGGGAACAGTACTC;+!Hltf#MA0109.1;-2;0.00595502;2.83459;0.591843;10;AGGCCAAAGTCCA;ATATAAGGTT;-!NRG1#MA0347.1;2;0.00623817;2.96937;0.591843;13;AGGCCAAAGTCCA;CTAGATCAGGGTCCATCGCA;+!NR4A2#MA0160.1;-6;0.00971882;4.62616;0.838243;7;AGGCCAAAGTCCA;AAGGTCAC;+!SOX10#MA0442.1;-3;0.014479;6.89201;0.99658;6;AGGCCAAAGTCCA;ACAAAG;-!PBF#MA0064.1;-5;0.016133;7.67932;0.99658;5;AGGCCAAAGTCCA;AAAGC;+!tll#MA0459.1;-4;0.0187808;8.93964;0.99658;9;AGGCCAAAGTCCA;AAAAGTCAAA;+!ESR1#MA0112.2;-2;0.0204736;9.74542;0.99658;11;AGGCCAAAGTCCA;GGCCCAGGTCACCCTGACCT;+
}}
}}

Latest revision as of 12:41, 7 September 2012

Full Name: HNF4A_f1

Motif matrix
POACGT
1773.4674379807423126.11966246958585753.4574685387211208.06305261049357
2121.3478127623503253.3102474580010151562.4387421949898124.01081918421183
3364.73108019204307111.79571990983267852.1245854020483532.4562360956186
4190.9039670287809682.1685665895789505.0394090248067482.9956789563761
5109.864884136847311572.519626908249645.948561258819545132.7745492956369
61706.036971720865335.47567288146607531.07450695252937288.5204700446932
71418.398537087748845.3833436260909380.2068839675023417.118856918207424
81538.39243564372034.398031070586581293.7202822579301424.59687262731644
914.10022482922836523.128532753352431787.791735219071636.0871287979043
10130.2228089816372644.85168015241222654.52293321249851031.5101992529942
1190.93337721491307840.6860696958689202.0563450589748727.431829629783
1283.069111651525531584.910347288304143.73344329832943149.394719361394
131366.352061220616116.41968909386502196.67174966665655181.66412161841086

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
HNF4A#MA0114.103.45072e-171.64254e-143.27385e-1413AGGCCAAAGTCCAAGGCCAAAGGTCA+
NR2F1#MA0017.112.82229e-101.34341e-071.33882e-0713AGGCCAAAGTCCAAGGTTCAAAGGTCA-
PPARG::RXRA#MA0065.223.67674e-081.75013e-051.16276e-0513AGGCCAAAGTCCAGTAGGGCAAAGGTCA+
PPARG::RXRA#MA0065.246.14959e-060.00292720.001458613AGGCCAAAGTCCACTAGGGGTCAAAGGTCATCG+
NR1H2::RXRA#MA0115.122.05155e-050.009765380.0038927913AGGCCAAAGTCCAAAAGGTCAAAGGTCAAC+
Esrrb#MA0141.1-10.0004297690.204570.067956812AGGCCAAAGTCCAAGCTCAAGGTCA+
pan#MA0237.1-10.001766950.8410680.2394838AGGCCAAAGTCCAGATCAAAG-
GAL4#MA0299.110.002974361.41580.35273813AGGCCAAAGTCCACGGGGAACAGTACTC+
Hltf#MA0109.1-20.005955022.834590.59184310AGGCCAAAGTCCAATATAAGGTT-
NRG1#MA0347.120.006238172.969370.59184313AGGCCAAAGTCCACTAGATCAGGGTCCATCGCA+
NR4A2#MA0160.1-60.009718824.626160.8382437AGGCCAAAGTCCAAAGGTCAC+
SOX10#MA0442.1-30.0144796.892010.996586AGGCCAAAGTCCAACAAAG-
PBF#MA0064.1-50.0161337.679320.996585AGGCCAAAGTCCAAAAGC+
tll#MA0459.1-40.01878088.939640.996589AGGCCAAAGTCCAAAAAGTCAAA+
ESR1#MA0112.2-20.02047369.745420.9965811AGGCCAAAGTCCAGGCCCAGGTCACCCTGACCT+
Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=MacroAPE_1083:HNF4A_f1&oldid=2133736"