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MacroAPE 1083:RGCGGCSGC,motif262: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!1;598.968;74.871;610.119;309.042!2;280.368;1.593;1309.446;1.593!3;1.593;1588.221;1.593;1.593!4;113.103;434.889;743.931;301.077!5;1.593;1.593;1...")
 
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1e-06!11441-118I1;1.26024e-07!10007-101B4;1.14979e-08!11520-119H8;0.303365!11600-120H7;0.000119366!11681-122H7;0.000155164!11216-116B1;9.96618e-05!12179-129A1;0.0288291!12180-129A2;0.0335982!12181-129A3;0.00934251!12176-128I7;0.0106395!12177-128I8;0.00708017!12182-129A4;0.00614823!12183-129A5;0.0121309!12184-129A6;0.0351567!10809-111A8;0.0143173!10597-108E3;0.118259!10717-109I6;0.0488864!10455-106G5;0.000139547!10534-107G3;0.562071!10429-106D6;0.588362!10464-106H5;0.021709!10827-111C8;0.723087!10789-110H6;0.796465!10828-111C9;0.196579!10788-110H5;0.667069!10792-110H9;0.615102!10765-110E9;0.854997!10829-111D1;0.927323!10830-111D2;0.890334!10831-111D3;0.213821!10832-111D4;0.599778!10833-111D5;0.611006!10764-110E8;0.984783!10770-110F5;0.591179!10399-106A3;0.992261!10400-106A4;0.688074!10405-106A9;0.871044!10834-111D6;0.8066!10835-111D7;0.923812!10836-111D8;0.492757!10837-111D9;0.216704!10699-109G6;0.988634!10802-111A1;0.0769677!10796-110I4;0.316432!10010-101C1;0.32086!10810-111A9;0.693138!10421-106C7;0.578099!10708-109H6;0.608124!12235-129G3;0.0285518!12236-129G4;0.125314!12237-129G5;0.134095!10167-103B5;0.120335!10151-102I7;0.00193027!10428-106D5;0.000106475!10795-110I3;0.116725!10805-111A4;0.150126!10052-101G7;0.737307!10189-103D9;0.820426!10589-108D4;0.936529!10425-106D2;0.767947!10427-106D4;0.061777!10702-109G9;0.746155!10432-106D9;0.818356!10496-107C1;0.0389704!10718-109I7;0.00107533!10011-101C2;0.718114!10053-101G8;0.994395!10686-109F2;0.0970976!10084-102B3;0.118783!10012-101C3;0.000258198!10085-102B4;0.000356592!10482-107A5;0.0070733!10419-106C5;0.654506!10080-102A8;0.996768!10760-110E4;0.92822!10709-109H7;0.00528745!10710-109H8;0.153545!10703-109H1;0.00809349!10719-109I8;0.819444!10642-109A3;0.31977!10177-103C6;0.165418!10164-103B2;0.00466124!10173-103C2;0.000108279!10166-103B4;0.000134792!10083-102B2;1.8816e-05!10188-103D8;0.000715886!10552-107I3;0.000581078!10553-107I4;0.0547579!10013-101C4;0.556895!10536-107G5;0.848862!10618-108G6;0.0862961!10423-106C9;0.16768!10785-110H2;0.0458286!12238-129G6;0.0886387!12239-129G7;0.0501975!12240-129G8;0.0527376!10416-106C2;0.00746357!10801-110I9;0.838458!10766-110F1;0.555092!10824-111C5;0.799096!10825-111C6;0.325376!10826-111C7;0.325961!10454-106G4;0.383678!10409-106B4;0.555299!10638-108I8;0.828864!10636-108I6;0.00882293!10513-107D9;0.000725304!10420-106C6;0.0281255!10082-102B1;0.0704328!10014-101C5;0.050805!10070-101I7;0.187314!10452-106G2;0.659126!10453-106G3;0.130917!10449-106F8;0.950461!10042-101F6;0.973697!10069-101I6;0.000398698!10193-103E4;0.435327!10631-108I1;0.000285382!10438-106E6;0.518343!10488-107B2;0.259087!10196-103E7;0.0397694!10071-101I8;0.183978!10071-101I8;0.399525!10041-101F5;0.00155501!10451-106G1;0.67334!10450-106F9;0.295678!10604-108F1;0.459113!10605-108F2;0.814612!10606-108F3;0.294777!10603-108E9;0.649504!10497-107C2;0.583059!10448-106F7;0.159234!10643-109A4;0.255623!10426-106D3;0.00122982!10431-106D8;0.00092756!10197-103E8;0.0810947!10443-106F2;0.260234!10815-111B5;0.00172383!10816-111B6;0.079076!10817-111B7;0.276905!10015-101C6;0.090855!10410-106B5;0.0723577!10054-101G9;0.302735!10758-110E2;0.307624!10711-109H9;0.88013!10040-101F4;0.183376!10470-106I2;0.000114209!10415-106C1;2.33098e-06!10198-103E9;0.00163413!10614-108G2;0.160303!10612-108F9;0.000240749!10549-107H9;0.108116!10615-108G3;0.387548!10487-107B1;0.0482934!10433-106E1;0.0160932!10688-109F4;0.108312!10444-106F3;0.000149505!10444-106F3;0.732505!10485-107A8;0.717997!10413-106B8;0.554685!10175-103C4;0.468841!10161-103A8;0.00559576!12131-128D7;0.000171622!10624-108H3;6.61632e-05!10712-109I1;0.0261543!10205-103F7;0.235575!10206-103F8;0.172306!10207-103F9;0.0552119!10050-101G5;0.266988!10051-101G6;0.00277003!10016-101C7;0.814233!10046-101G1;0.0750972!10778-110G4;0.0275039!10633-108I3;0.312506!10818-111B8;0.0883248!10819-111B9;0.615251!10820-111C1;0.567758!10484-107A7;0.629187!10808-111A7;0.335643!10169-103B7;0.834692!10153-102I9;0.00199131!13425-144D5;5.30384e-05!13433-144E4;0.885311!13437-144E8;0.451741!11904-125F5;0.930576!11905-125F6;0.188838!10039-101F3;0.595199!10791-110H8;0.000234715!10017-101C8;0.343587!10045-101F9;0.253714!10509-107D5;0.847512!10839-111E2;0.626841!10692-109F8;0.0746715!10079-102A7;0.147468!10078-102A6;0.93658!10721-110A1;0.49119!10569-108B2;0.810156!10570-108B3;0.294741!10571-108B4;0.349462!10647-109A8;0.397684!10752-110D5;0.200936!10782-110G8;0.563415!10726-110A6;0.195036!10018-101C9;0.0222338!10086-102B5;0.391333!10182-103D2;0.0673144!10165-103B3;0.00022968!10499-107C4;3.83181e-05!10408-106B3;0.58142!10019-101D1;0.057491!10068-101I5;0.640336!10075-102A3;0.386995!10077-102A5;0.588862!10727-110A7;0.832667!10775-110G1;0.688901!10412-106B7;0.468284!12231-129F8;0.777059!12232-129F9;0.0036974!12233-129G1;0.035157!12234-129G2;0.0224267!10414-106B9;0.0012766!10170-103B8;0.200821!10183-103D3;0.000675786!10150-102I6;0.00115634!10174-103C3;5.67111e-05!10155-103A2;0.0128925!10038-101F2;6.74816e-05!10838-111E1;0.000665407!10759-110E3;0.148084!10514-107E1;0.673985!10465-106H6;0.0926048!10691-109F7;0.440049!10843-111E6;0.00389045!10844-111E7;0.315212!11747-123G1;0.454982!11748-123G2;0.00789827!11749-123G3;0.0802892!11750-123G4;0.00717775!11751-123G5;0.0097565!11840-124H4;0.0413998!11752-123G6;0.0395689!11753-123G7;0.0729329!11754-123G8;0.0775347!11755-123G9;0.0137309!11756-123H1;0.0304489!11833-124G6;0.225083!11760-123H5;0.132865!11836-124G9;0.0966111!11758-123H3;0.197732!11835-124G8;0.166966!11762-123H7;0.172385!11838-124H2;0.0143154!11757-123H2;0.377017!11759-123H4;0.0897254!11761-123H6;0.0573597!11842-124H6;0.0862642!11837-124H1;0.45471!10568-108B1;0.253108!13230-141I8;0.0402338!13231-141I9;0.132746!10696-109G3;0.129891!10493-107B7;0.0197427!10494-107B8;0.00262732!10850-111F4;0.118607!10851-111F5;0.0217497!10852-111F6;0.199193!10853-111F7;0.00161563!10854-111F8;0.0106223!10855-111F9;0.852842!10856-111G1;0.0030078!10847-111F1;0.01704!10846-111E9;0.239013!10848-111F2;0.000446485!10845-111E8;0.000473032!10857-111G2;0.462943!10858-111G3;0.000237152!10156-103A3;4.55755e-05!11901-125F2;5.32949e-05!11902-125F3;0.834955!11903-125F4;0.450406!10689-109F5;0.778651!10648-109A9;0.051365!10784-110H1;0.160021!10744-110C6;0.226651!10772-110F7;0.569178!10474-106I6;0.595213!10600-108E6;0.247563!10684-109E9;0.329737!12226-129F3;0.97144!12227-129F4;5.1271e-05!10508-107D4;0.963972!10539-107G8;0.00350528!10607-108F4;0.0292963!10555-107I6;0.247726!10774-110F9;0.04781!10637-108I7;0.874076!10663-109C6;0.120055!10728-110A8;0.418963!10729-110A9;0.285549!10430-106D7;0.930869!10730-110B1;0.00387168!10813-111B3;0.0706947!10812-111B2;0.118479!10037-101F1;0.255844!10172-103C1;0.000249794!10163-103B1;0.00204775!10076-102A4;3.73453e-05!10073-102A1;0.000432356!10036-101E9;0.00341273!10195-103E6;0.00046617!10277-104E7;0.00038064!10434-106E2;0.000430935!10550-107I1;0.833794!10545-107H5;0.250738!10544-107H4;0.0192354!10704-109H2;0.00261746!10510-107D6;0.207581!10558-107I9;0.186163!10020-101D2;0.514251!10732-110B3;0.795265!10049-101G4;0.569608!10698-109G5;0.941643!10437-106E5;0.695812!10417-106C3;0.0356785!10035-101E8;0.000257268!10171-103B9;0.000167946!10157-103A4;0.00130869!10034-101E7;6.88723e-05!10072-101I9;0.000205869!10199-103F1;0.00231665!10200-103F2;0.755576!10697-109G4;0.71668!10723-110A3;0.825385!10179-103C8;0.0500032!10160-103A7;2.50821e-05!10180-103C9;3.08804e-06!10162-103A9;0.00451655!10021-101D3;0.000409113!10840-111E3;0.411613!10706-109H4;0.630964!10033-101E6;0.904168!10032-101E5;3.01179e-05!10490-107B4;0.000386235!10439-106E7;0.000607977!10022-101D4;0.041815!10176-103C5;0.887722!10469-106I1;0.000111087!10067-101I4;0.0109033!10411-106B6;0.142759!10471-106I3;0.0110996!10030-101E3;0.00201747!10475-106I7;0.239514!10787-110H4;0.486411!10477-106I9;0.613614!10695-109G2;0.146425!11771-123I7;0.0985882!11772-123I8;0.0114796!11773-123I9;0.151957!10093-102C3;0.21996!10442-106F1;0.424713!10442-106F1;0.066529!10201-103F3;0.154016!10639-108I9;0.269097!11843-124H7;0.0749648!11841-124H5;0.300969!10693-109F9;0.536633!10436-106E4;0.415755!10483-107A6;0.00134437!10282-104F3;0.00194807!10023-101D5;0.421693!10066-101I3;0.154858!10065-101I2;0.843141!10800-110I8;0.118758!10610-108F7;0.108188!10841-111E4;0.0677066!10541-107H1;0.519368!10842-111E5;0.128468!10562-108A4;0.0901175!10024-101D6;0.501039!10064-101I1;0.207796!10609-108F6;0.0915209!10048-101G3;0.158604!10781-110G7;0.148267!10181-103D1;0.000829332!10159-103A6;0.00218873!10056-101H2;0.000176935!10737-110B8;0.00482152!10025-101D7;0.164902!10044-101F8;0.538815!10424-106D1;0.822863!10463-106H4;0.886415!10616-108G4;0.0716122!10486-107A9;0.0544069!10062-101H8;0.125029!10202-103F4;0.790364!10158-103A5;0.804449!10441-106E9;0.000221181!10031-101E4;0.79237!10063-101H9;0.000853691!10063-101H9;0.00231168!11763-123H8;0.813365!11765-123I1;0.251076!11768-123I4;0.123736!10807-111A6;0.0961364!10790-110H7;0.240166!10798-110I6;0.159546!10786-110H3;0.549415!10591-108D6;0.979864!10593-108D8;0.630531!10590-108D5;0.451615!10026-101D8;0.943454!10096-102C6;0.0635974!10168-103B6;0.605581!10154-103A1;0.00198512!10209-103G2;6.04305e-05!10061-101H7;0.172639!10027-101D9;0.569629!10043-101F7;0.00205976!10783-110G9;0.00213381!10028-101E1;0.521992!10060-101H6;0.79994!10203-103F5;0.156236!10059-101H5;0.199301!10047-101G2;0.28878!10029-101E2;0.176169!10058-101H4;0.0402812!10418-106C4;0.745261!10492-107B6;0.268423!10694-109G1;0.134257!10797-110I5;0.119313!10057-101H3;0.332359!10100-102D1;0.0650628!10055-101H1;0.49916!10204-103F6;0.584405!10191-103E2;0.132174!10563-108A5;0.996845
|name=RGCGGCSGC,motif262,CNhs10643,T:1593.0(51.91%),B:24766.4(40.29%),P:1e-37
|name=RGCGGCSGC,motif262,CNhs10643,T:1593.0(51.91%),B:24766.4(40.29%),P:1e-37
|tomtom_result=RDS1#MA0361.1;-2;0.0001556;0.0740658;0.128633;7;GGCGGCCGC;CGGCCGA;+!YLL054C#MA0429.1;-2;0.000630443;0.300091;0.170781;7;GGCGGCCGC;CGGCCGA;+!abi4#MA0123.1;0;0.000721765;0.34356;0.170781;9;GGCGGCCGC;GGGGGCACCG;-!Mafb#MA0117.1;-1;0.00332993;1.58505;0.525276;8;GGCGGCCGC;GCGTCAGC;-!STP1#MA0394.1;-2;0.00535891;2.55084;0.559984;7;GGCGGCCGC;GCGCCGCA;-!IME1#MA0320.1;-2;0.00564616;2.68757;0.559984;7;GGCGGCCGC;CCGCCGAG;+!Zfx#MA0146.1;2;0.00698875;3.32665;0.559984;9;GGCGGCCGC;GGGGCCGAGGCCTG;+!Myf#MA0055.1;1;0.00736611;3.50627;0.559984;9;GGCGGCCGC;CAGCAGCTGCTG;+!UGA3#MA0410.1;-2;0.00770315;3.6667;0.559984;7;GGCGGCCGC;CGGCGGGA;+!UME6#MA0412.1;4;0.00828322;3.94281;0.559984;9;GGCGGCCGC;AATTAGCCGCCGA;-!PHD1#MA0355.1;0;0.0146287;6.96328;0.769279;9;GGCGGCCGC;ACCTGCAGCA;+!MIZF#MA0131.1;1;0.0160856;7.65677;0.769279;9;GGCGGCCGC;TAACGTCCGC;+!brk#MA0213.1;0;0.0162558;7.73778;0.769279;8;GGCGGCCGC;GGCGCCAG;-
}}
}}

Latest revision as of 12:41, 7 September 2012

Full Name: RGCGGCSGC,motif262,CNhs10643,T:1593.0(51.91%),B:24766.4(40.29%),P:1e-37

Motif matrix
POACGT
1598.96874.871610.119309.042
2280.3681.5931309.4461.593
31.5931588.2211.5931.593
4113.103434.889743.931301.077
51.5931.5931588.2211.593
61.5931588.2211.5931.593
7345.681705.699484.27257.348
81.5931.5931588.2211.593
9203.9041385.911.5931.593

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
RDS1#MA0361.1-20.00015560.07406580.1286337GGCGGCCGCCGGCCGA+
YLL054C#MA0429.1-20.0006304430.3000910.1707817GGCGGCCGCCGGCCGA+
abi4#MA0123.100.0007217650.343560.1707819GGCGGCCGCGGGGGCACCG-
Mafb#MA0117.1-10.003329931.585050.5252768GGCGGCCGCGCGTCAGC-
STP1#MA0394.1-20.005358912.550840.5599847GGCGGCCGCGCGCCGCA-
IME1#MA0320.1-20.005646162.687570.5599847GGCGGCCGCCCGCCGAG+
Zfx#MA0146.120.006988753.326650.5599849GGCGGCCGCGGGGCCGAGGCCTG+
Myf#MA0055.110.007366113.506270.5599849GGCGGCCGCCAGCAGCTGCTG+
UGA3#MA0410.1-20.007703153.66670.5599847GGCGGCCGCCGGCGGGA+
UME6#MA0412.140.008283223.942810.5599849GGCGGCCGCAATTAGCCGCCGA-
PHD1#MA0355.100.01462876.963280.7692799GGCGGCCGCACCTGCAGCA+
MIZF#MA0131.110.01608567.656770.7692799GGCGGCCGCTAACGTCCGC+
brk#MA0213.100.01625587.737780.7692798GGCGGCCGCGGCGCCAG-
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