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MacroAPE 1083:Motif GCNCAT: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!01;0;0;6864;0!02;0;6864;0;0!03;1716;1716;1716;1716!04;0;6864;0;0!05;6864;0;0;0!06;0;0;0;6864 |macroape_1083_sample_pvalues=11376-118A8;0.4476...")
 
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;0.621458!10827-111C8;0.860178!10789-110H6;0.929072!10828-111C9;0.41993!10788-110H5;0.576223!10792-110H9;0.902029!10765-110E9;0.376654!10829-111D1;0.584478!10830-111D2;0.643764!10831-111D3;0.27614!10832-111D4;0.615508!10833-111D5;0.786648!10764-110E8;0.851513!10770-110F5;0.223132!10399-106A3;0.723082!10400-106A4;0.715495!10405-106A9;0.766652!10834-111D6;0.802795!10835-111D7;0.884724!10836-111D8;0.924928!10837-111D9;0.967817!10699-109G6;0.609295!10802-111A1;0.80169!10796-110I4;0.729155!10010-101C1;0.677572!10810-111A9;0.718788!10421-106C7;0.486895!10708-109H6;0.2092!12235-129G3;0.901622!12236-129G4;0.732478!12237-129G5;0.661707!10167-103B5;0.756554!10151-102I7;0.461854!10428-106D5;0.564797!10795-110I3;0.616942!10805-111A4;0.843933!10052-101G7;0.748466!10189-103D9;0.574875!10589-108D4;0.484551!10425-106D2;0.476893!10427-106D4;0.0337965!10702-109G9;0.428985!10432-106D9;0.405641!10496-107C1;0.844885!10718-109I7;0.364484!10011-101C2;0.379939!10053-101G8;0.921959!10686-109F2;0.00241518!10084-102B3;0.619717!10012-101C3;0.585662!10085-102B4;0.518955!10482-107A5;0.243449!10419-106C5;0.892165!10080-102A8;0.301575!10760-110E4;0.702442!10709-109H7;0.466958!10710-109H8;0.567165!10703-109H1;0.835812!10719-109I8;0.0841576!10642-109A3;0.385591!10177-103C6;0.201888!10164-103B2;0.591329!10173-103C2;0.685568!10166-103B4;0.350426!10083-102B2;0.435207!10188-103D8;0.437669!10552-107I3;0.538846!10553-107I4;0.820394!10013-101C4;0.945111!10536-107G5;0.85567!10618-108G6;0.392719!10423-106C9;0.780478!10785-110H2;0.828492!12238-129G6;0.878018!12239-129G7;0.679804!12240-129G8;0.431025!10416-106C2;0.544507!10801-110I9;0.68338!10766-110F1;0.537263!10824-111C5;0.382561!10825-111C6;0.554125!10826-111C7;0.616176!10454-106G4;0.577552!10409-106B4;0.57354!10638-108I8;0.927986!10636-108I6;0.947817!10513-107D9;0.691465!10420-106C6;0.725895!10082-102B1;0.881997!10014-101C5;0.436275!10070-101I7;0.525004!10452-106G2;0.835638!10453-106G3;0.391082!10449-106F8;0.467347!10042-101F6;0.505084!10069-101I6;0.533869!10193-103E4;0.79933!10631-108I1;0.465355!10438-106E6;0.671668!10488-107B2;0.715192!10196-103E7;0.981077!10071-101I8;0.44633!10071-101I8;0.841102!10041-101F5;0.451193!10451-106G1;0.698554!10450-106F9;0.957887!10604-108F1;0.757814!10605-108F2;0.951494!10606-108F3;0.943996!10603-108E9;0.934475!10497-107C2;0.805567!10448-106F7;0.642205!10643-109A4;0.326744!10426-106D3;0.377992!10431-106D8;0.733806!10197-103E8;0.773979!10443-106F2;0.756754!10815-111B5;0.631254!10816-111B6;0.848317!10817-111B7;0.751541!10015-101C6;0.856491!10410-106B5;0.657696!10054-101G9;0.78103!10758-110E2;0.664642!10711-109H9;0.613781!10040-101F4;0.506599!10470-106I2;0.510393!10415-106C1;0.883875!10198-103E9;0.834826!10614-108G2;0.796795!10612-108F9;0.413042!10549-107H9;0.700875!10615-108G3;0.576565!10487-107B1;0.668783!10433-106E1;0.903165!10688-109F4;0.934096!10444-106F3;0.887009!10444-106F3;0.377238!10485-107A8;0.31525!10413-106B8;0.797594!10175-103C4;0.402174!10161-103A8;0.589652!12131-128D7;0.593174!10624-108H3;0.051906!10712-109I1;0.100728!10205-103F7;0.248604!10206-103F8;0.971979!10207-103F9;0.992036!10050-101G5;0.671745!10051-101G6;0.837196!10016-101C7;0.684835!10046-101G1;0.862966!10778-110G4;0.934318!10633-108I3;0.401364!10818-111B8;0.597464!10819-111B9;0.931863!10820-111C1;0.948114!10484-107A7;0.973717!10808-111A7;0.592925!10169-103B7;0.508334!10153-102I9;0.615333!13425-144D5;0.650861!13433-144E4;0.326173!13437-144E8;0.268513!11904-125F5;0.31025!11905-125F6;0.365884!10039-101F3;0.242273!10791-110H8;0.489996!10017-101C8;0.524898!10045-101F9;0.370495!10509-107D5;0.978447!10839-111E2;0.756712!10692-109F8;0.227939!10079-102A7;0.940525!10078-102A6;0.996746!10721-110A1;0.586195!10569-108B2;0.554141!10570-108B3;0.948085!10571-108B4;0.329057!10647-109A8;0.446014!10752-110D5;0.347175!10782-110G8;0.836769!10726-110A6;0.521437!10018-101C9;0.585043!10086-102B5;0.119638!10182-103D2;0.132925!10165-103B3;0.559588!10499-107C4;0.574635!10408-106B3;0.785929!10019-101D1;0.732595!10068-101I5;0.178996!10075-102A3;0.785376!10077-102A5;0.235715!10727-110A7;0.147926!10775-110G1;0.126286!10412-106B7;0.62423!12231-129F8;0.741263!12232-129F9;0.598249!12233-129G1;0.666002!12234-129G2;0.703818!10414-106B9;0.567894!10170-103B8;0.811546!10183-103D3;0.523916!10150-102I6;0.522365!10174-103C3;0.630199!10155-103A2;0.740612!10038-101F2;0.66133!10838-111E1;0.589646!10759-110E3;0.382062!10514-107E1;0.363449!10465-106H6;0.854228!10691-109F7;0.350734!10843-111E6;0.445809!10844-111E7;0.231828!11747-123G1;0.14483!11748-123G2;0.0752887!11749-123G3;0.229025!11750-123G4;0.153389!11751-123G5;0.329086!11840-124H4;0.309493!11752-123G6;0.265797!11753-123G7;0.794525!11754-123G8;0.33127!11755-123G9;0.346494!11756-123H1;0.207839!11833-124G6;0.326306!11760-123H5;0.629995!11836-124G9;0.289575!11758-123H3;0.347208!11835-124G8;0.40375!11762-123H7;0.272471!11838-124H2;0.355568!11757-123H2;0.43926!11759-123H4;0.442862!11761-123H6;0.101668!11842-124H6;0.494502!11837-124H1;0.267604!10568-108B1;0.279403!13230-141I8;0.0403904!13231-141I9;0.573942!10696-109G3;0.793067!10493-107B7;0.325547!10494-107B8;0.984766!10850-111F4;0.815267!10851-111F5;0.897389!10852-111F6;0.905193!10853-111F7;0.392837!10854-111F8;0.581307!10855-111F9;0.755406!10856-111G1;0.430263!10847-111F1;0.908788!10846-111E9;0.372927!10848-111F2;0.752429!10845-111E8;0.697437!10857-111G2;0.842086!10858-111G3;0.730117!10156-103A3;0.848734!11901-125F2;0.593023!11902-125F3;0.835598!11903-125F4;0.801214!10689-109F5;0.41008!10648-109A9;0.883718!10784-110H1;0.883875!10744-110C6;0.632693!10772-110F7;0.136851!10474-106I6;0.640915!10600-108E6;0.350322!10684-109E9;0.41692!12226-129F3;0.786216!12227-129F4;0.945782!10508-107D4;0.993249!10539-107G8;0.379518!10607-108F4;0.196255!10555-107I6;0.661078!10774-110F9;0.393413!10637-108I7;0.892612!10663-109C6;0.70631!10728-110A8;0.816624!10729-110A9;0.949981!10430-106D7;0.525469!10730-110B1;0.8678!10813-111B3;0.138554!10812-111B2;0.554025!10037-101F1;0.745901!10172-103C1;0.526279!10163-103B1;0.593433!10076-102A4;0.708823!10073-102A1;0.515261!10036-101E9;0.458777!10195-103E6;0.557525!10277-104E7;0.542589!10434-106E2;0.310517!10550-107I1;0.953651!10545-107H5;0.61041!10544-107H4;0.954702!10704-109H2;0.774776!10510-107D6;0.769583!10558-107I9;0.996177!10020-101D2;0.991466!10732-110B3;0.589918!10049-101G4;0.903784!10698-109G5;0.189732!10437-106E5;0.968366!10417-106C3;0.866886!10035-101E8;0.796738!10171-103B9;0.507067!10157-103A4;0.514172!10034-101E7;0.619544!10072-101I9;0.475462!10199-103F1;0.420558!10200-103F2;0.873283!10697-109G4;0.706388!10723-110A3;0.523956!10179-103C8;0.410464!10160-103A7;0.639155!10180-103C9;0.731419!10162-103A9;0.424066!10021-101D3;0.675479!10840-111E3;0.782231!10706-109H4;0.598662!10033-101E6;0.815957!10032-101E5;0.443186!10490-107B4;0.534569!10439-106E7;0.754758!10022-101D4;0.219047!10176-103C5;0.989001!10469-106I1;0.550688!10067-101I4;0.394928!10411-106B6;0.975699!10471-106I3;0.732949!10030-101E3;0.635949!10475-106I7;0.775213!10787-110H4;0.315589!10477-106I9;0.172648!10695-109G2;0.341979!11771-123I7;0.905804!11772-123I8;0.964047!11773-123I9;0.910272!10093-102C3;0.737457!10442-106F1;0.898891!10442-106F1;0.7769!10201-103F3;0.457634!10639-108I9;0.806686!11843-124H7;0.534647!11841-124H5;0.740822!10693-109F9;0.964698!10436-106E4;0.453952!10483-107A6;0.324354!10282-104F3;0.502675!10023-101D5;0.520895!10066-101I3;0.590707!10065-101I2;0.912464!10800-110I8;0.923264!10610-108F7;0.382542!10841-111E4;0.305227!10541-107H1;0.358633!10842-111E5;0.420922!10562-108A4;0.409603!10024-101D6;0.186616!10064-101I1;0.345761!10609-108F6;0.681499!10048-101G3;0.72813!10781-110G7;0.942648!10181-103D1;0.688967!10159-103A6;0.633615!10056-101H2;0.732623!10737-110B8;0.525778!10025-101D7;0.675445!10044-101F8;0.677617!10424-106D1;0.797315!10463-106H4;0.654183!10616-108G4;0.952939!10486-107A9;0.923358!10062-101H8;0.995907!10202-103F4;0.79464!10158-103A5;0.823547!10441-106E9;0.557927!10031-101E4;0.945296!10063-101H9;0.498963!10063-101H9;0.374325!11763-123H8;0.878802!11765-123I1;0.396552!11768-123I4;0.838487!10807-111A6;0.616883!10790-110H7;0.349132!10798-110I6;0.701744!10786-110H3;0.308286!10591-108D6;0.530089!10593-108D8;0.71064!10590-108D5;0.611687!10026-101D8;0.870451!10096-102C6;0.657859!10168-103B6;0.258331!10154-103A1;0.573167!10209-103G2;0.587613!10061-101H7;0.610821!10027-101D9;0.818892!10043-101F7;0.0848012!10783-110G9;0.073166!10028-101E1;0.602398!10060-101H6;0.048528!10203-103F5;0.712954!10059-101H5;0.633973!10047-101G2;0.9341!10029-101E2;0.476874!10058-101H4;0.533069!10418-106C4;0.889677!10492-107B6;0.476437!10694-109G1;0.898486!10797-110I5;0.676832!10057-101H3;0.318825!10100-102D1;0.760727!10055-101H1;0.925651!10204-103F6;0.659853!10191-103E2;0.359944!10563-108A5;0.615714
|name=motif_GCNCAT
|name=motif_GCNCAT
|tomtom_result=SRF#MA0083.1;0;0.00432187;2.05721;1;6;GCACAT;GCCCATATATGG;+!TEA1#MA0405.1;2;0.00713976;3.39853;1;6;GCACAT;GCGGACAT;+!DAL82#MA0291.1;2;0.00873073;4.15583;1;6;GCACAT;GCGCACATT;-!TOD6#MA0350.1;7;0.0175261;8.3424;1;6;GCACAT;AGGCACAGCTCATCGCGTTTT;+!DOT6#MA0351.1;7;0.0190282;9.05743;1;6;GCACAT;TTCTGCACCTCATCGCATCCT;+
}}
}}

Latest revision as of 12:44, 7 September 2012

Full Name: motif_GCNCAT

Motif matrix
POACGT
010068640
020686400
031716171617161716
040686400
056864000
060006864

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
SRF#MA0083.100.004321872.0572116GCACATGCCCATATATGG+
TEA1#MA0405.120.007139763.3985316GCACATGCGGACAT+
DAL82#MA0291.120.008730734.1558316GCACATGCGCACATT-
TOD6#MA0350.170.01752618.342416GCACATAGGCACAGCTCATCGCGTTTT+
DOT6#MA0351.170.01902829.0574316GCACATTTCTGCACCTCATCGCATCCT+
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