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MacroAPE 1083:Motif TCNGGA: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!01;0;0;0;60000!02;0;60000;0;0!03;15000;15000;15000;15000!04;0;0;60000;0!05;0;0;60000;0!06;60000;0;0;0 |macroape_1083_sample_pvalues=11376-118...")
 
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597-108E3;0.362219!10717-109I6;0.109827!10455-106G5;0.69119!10534-107G3;0.328814!10429-106D6;0.588623!10464-106H5;0.187857!10827-111C8;0.407355!10789-110H6;0.564288!10828-111C9;0.599344!10788-110H5;0.841282!10792-110H9;0.605072!10765-110E9;0.504176!10829-111D1;0.57529!10830-111D2;0.375582!10831-111D3;0.485071!10832-111D4;0.717893!10833-111D5;0.464975!10764-110E8;0.359145!10770-110F5;0.331392!10399-106A3;0.831392!10400-106A4;0.892768!10405-106A9;0.868723!10834-111D6;0.870535!10835-111D7;0.526345!10836-111D8;0.501777!10837-111D9;0.673045!10699-109G6;0.941301!10802-111A1;0.857547!10796-110I4;0.735527!10010-101C1;0.11848!10810-111A9;0.447191!10421-106C7;0.35282!10708-109H6;0.175211!12235-129G3;0.547637!12236-129G4;0.359706!12237-129G5;0.879506!10167-103B5;0.366085!10151-102I7;0.732063!10428-106D5;0.786948!10795-110I3;0.428683!10805-111A4;0.621165!10052-101G7;0.408914!10189-103D9;0.463714!10589-108D4;0.848832!10425-106D2;0.139439!10427-106D4;0.86184!10702-109G9;0.149272!10432-106D9;0.0167187!10496-107C1;0.929182!10718-109I7;0.347055!10011-101C2;0.373724!10053-101G8;0.404303!10686-109F2;0.337383!10084-102B3;0.0398494!10012-101C3;0.487783!10085-102B4;0.719153!10482-107A5;0.691975!10419-106C5;0.469217!10080-102A8;0.343596!10760-110E4;0.297856!10709-109H7;0.627025!10710-109H8;0.386779!10703-109H1;0.385096!10719-109I8;0.174955!10642-109A3;0.38458!10177-103C6;0.357422!10164-103B2;0.873685!10173-103C2;0.807163!10166-103B4;0.374106!10083-102B2;0.570039!10188-103D8;0.341247!10552-107I3;0.733251!10553-107I4;0.405519!10013-101C4;0.580988!10536-107G5;0.409718!10618-108G6;0.339478!10423-106C9;0.356581!10785-110H2;0.323777!12238-129G6;0.480415!12239-129G7;0.11958!12240-129G8;0.00661928!10416-106C2;0.0278643!10801-110I9;0.364186!10766-110F1;0.870347!10824-111C5;0.832245!10825-111C6;0.546672!10826-111C7;0.593358!10454-106G4;0.598201!10409-106B4;0.499883!10638-108I8;0.843675!10636-108I6;0.997946!10513-107D9;0.71821!10420-106C6;0.514548!10082-102B1;0.247259!10014-101C5;0.650422!10070-101I7;0.883833!10452-106G2;0.988902!10453-106G3;0.506067!10449-106F8;0.391585!10042-101F6;0.381623!10069-101I6;0.667304!10193-103E4;0.775204!10631-108I1;0.600657!10438-106E6;0.156189!10488-107B2;0.43447!10196-103E7;0.235557!10071-101I8;0.590105!10071-101I8;0.804485!10041-101F5;0.788312!10451-106G1;0.435219!10450-106F9;0.407238!10604-108F1;0.494442!10605-108F2;0.250739!10606-108F3;0.42152!10603-108E9;0.472003!10497-107C2;0.452318!10448-106F7;0.506216!10643-109A4;0.677256!10426-106D3;0.497225!10431-106D8;0.596032!10197-103E8;0.87597!10443-106F2;0.751165!10815-111B5;0.452798!10816-111B6;0.569967!10817-111B7;0.506379!10015-101C6;0.54804!10410-106B5;0.53755!10054-101G9;0.679057!10758-110E2;0.908551!10711-109H9;0.528623!10040-101F4;0.51778!10470-106I2;0.609075!10415-106C1;0.463378!10198-103E9;0.891446!10614-108G2;0.818997!10612-108F9;0.89065!10549-107H9;0.280092!10615-108G3;0.336256!10487-107B1;0.0311655!10433-106E1;0.632521!10688-109F4;0.93505!10444-106F3;0.339573!10444-106F3;0.830701!10485-107A8;0.7985!10413-106B8;0.762136!10175-103C4;0.42942!10161-103A8;0.747728!12131-128D7;0.81216!10624-108H3;0.0197344!10712-109I1;0.0683224!10205-103F7;0.183112!10206-103F8;0.516904!10207-103F9;0.792414!10050-101G5;0.253982!10051-101G6;0.509664!10016-101C7;0.866379!10046-101G1;0.805545!10778-110G4;0.735805!10633-108I3;0.000993548!10818-111B8;0.34092!10819-111B9;0.428458!10820-111C1;0.446655!10484-107A7;0.464083!10808-111A7;0.147446!10169-103B7;0.31751!10153-102I9;0.78076!13425-144D5;0.832324!13433-144E4;0.545518!13437-144E8;0.514696!11904-125F5;0.513169!11905-125F6;0.56958!10039-101F3;0.587254!10791-110H8;0.625912!10017-101C8;0.284362!10045-101F9;0.766646!10509-107D5;0.673637!10839-111E2;0.996908!10692-109F8;0.199667!10079-102A7;0.489064!10078-102A6;0.905349!10721-110A1;0.856486!10569-108B2;0.146456!10570-108B3;0.149721!10571-108B4;0.0496569!10647-109A8;0.0097455!10752-110D5;0.719647!10782-110G8;0.93668!10726-110A6;0.000443869!10018-101C9;0.787693!10086-102B5;0.467081!10182-103D2;0.480543!10165-103B3;0.729244!10499-107C4;0.831833!10408-106B3;0.133685!10019-101D1;0.217809!10068-101I5;0.36331!10075-102A3;0.222776!10077-102A5;0.437995!10727-110A7;0.610446!10775-110G1;0.120271!10412-106B7;0.441147!12231-129F8;0.681358!12232-129F9;0.937437!12233-129G1;0.592632!12234-129G2;0.823022!10414-106B9;0.978505!10170-103B8;0.186666!10183-103D3;0.693106!10150-102I6;0.719316!10174-103C3;0.807568!10155-103A2;0.997034!10038-101F2;0.96901!10838-111E1;0.807913!10759-110E3;0.324938!10514-107E1;0.928467!10465-106H6;0.753706!10691-109F7;0.472618!10843-111E6;0.560999!10844-111E7;0.333427!11747-123G1;0.307947!11748-123G2;0.000164667!11749-123G3;0.00140524!11750-123G4;0.00115661!11751-123G5;0.011742!11840-124H4;0.0839745!11752-123G6;0.275154!11753-123G7;0.00565857!11754-123G8;0.010083!11755-123G9;1.83918e-06!11756-123H1;1.22431e-05!11833-124G6;1.44217e-05!11760-123H5;0.0372948!11836-124G9;6.6685e-06!11758-123H3;0.00788048!11835-124G8;0.000733764!11762-123H7;0.000848167!11838-124H2;0.000604705!11757-123H2;0.00213313!11759-123H4;3.4584e-09!11761-123H6;0.000157478!11842-124H6;0.00181985!11837-124H1;0.0031381!10568-108B1;0.00129213!13230-141I8;0.146645!13231-141I9;0.0346086!10696-109G3;0.0503533!10493-107B7;0.104848!10494-107B8;0.628228!10850-111F4;0.996718!10851-111F5;0.728615!10852-111F6;0.501917!10853-111F7;0.416432!10854-111F8;0.96659!10855-111F9;0.914786!10856-111G1;0.986758!10847-111F1;0.86441!10846-111E9;0.540816!10848-111F2;0.520313!10845-111E8;0.911325!10857-111G2;0.17893!10858-111G3;0.626888!10156-103A3;0.867177!11901-125F2;0.774282!11902-125F3;0.31668!11903-125F4;0.150648!10689-109F5;0.278329!10648-109A9;0.884374!10784-110H1;0.667993!10744-110C6;0.488528!10772-110F7;0.222983!10474-106I6;0.531295!10600-108E6;0.119994!10684-109E9;0.751305!12226-129F3;0.101277!12227-129F4;0.368562!10508-107D4;0.438901!10539-107G8;0.0265688!10607-108F4;0.127469!10555-107I6;0.52024!10774-110F9;0.270393!10637-108I7;0.578306!10663-109C6;0.923821!10728-110A8;0.699354!10729-110A9;0.351147!10430-106D7;0.00269827!10730-110B1;0.45286!10813-111B3;0.0817698!10812-111B2;0.0338349!10037-101F1;0.000156577!10172-103C1;0.688267!10163-103B1;0.692055!10076-102A4;0.829714!10073-102A1;0.5901!10036-101E9;0.710451!10195-103E6;0.552207!10277-104E7;0.66001!10434-106E2;0.447622!10550-107I1;0.394773!10545-107H5;0.265858!10544-107H4;0.80198!10704-109H2;0.838141!10510-107D6;0.032691!10558-107I9;0.866562!10020-101D2;0.897053!10732-110B3;0.460047!10049-101G4;0.260714!10698-109G5;0.118857!10437-106E5;0.390732!10417-106C3;0.6663!10035-101E8;0.613733!10171-103B9;0.600523!10157-103A4;0.648548!10034-101E7;0.791386!10072-101I9;0.592761!10199-103F1;0.846896!10200-103F2;0.313671!10697-109G4;0.701624!10723-110A3;0.827105!10179-103C8;0.537348!10160-103A7;0.615816!10180-103C9;0.932474!10162-103A9;0.542393!10021-101D3;0.783109!10840-111E3;0.0786299!10706-109H4;0.123502!10033-101E6;0.714912!10032-101E5;0.646435!10490-107B4;0.560607!10439-106E7;0.454885!10022-101D4;0.394643!10176-103C5;0.463403!10469-106I1;0.736552!10067-101I4;0.753137!10411-106B6;0.792715!10471-106I3;0.498933!10030-101E3;0.681266!10475-106I7;0.988844!10787-110H4;0.128166!10477-106I9;0.422903!10695-109G2;0.611922!11771-123I7;0.428487!11772-123I8;0.836041!11773-123I9;0.81287!10093-102C3;0.323324!10442-106F1;0.414911!10442-106F1;0.229581!10201-103F3;0.172588!10639-108I9;0.491741!11843-124H7;0.68071!11841-124H5;0.576799!10693-109F9;0.932442!10436-106E4;0.176417!10483-107A6;0.448372!10282-104F3;0.191717!10023-101D5;0.526215!10066-101I3;0.721938!10065-101I2;0.807926!10800-110I8;0.544765!10610-108F7;0.08123!10841-111E4;0.09621!10541-107H1;0.274493!10842-111E5;0.375541!10562-108A4;0.115363!10024-101D6;0.118864!10064-101I1;0.884008!10609-108F6;0.993576!10048-101G3;0.0663941!10781-110G7;0.237076!10181-103D1;0.08914!10159-103A6;0.92864!10056-101H2;0.981223!10737-110B8;0.963949!10025-101D7;0.00751496!10044-101F8;0.401803!10424-106D1;0.269425!10463-106H4;0.271423!10616-108G4;0.312956!10486-107A9;0.871101!10062-101H8;0.489809!10202-103F4;0.88876!10158-103A5;0.761244!10441-106E9;0.872386!10031-101E4;0.976384!10063-101H9;0.575403!10063-101H9;0.727048!11763-123H8;0.968797!11765-123I1;0.00978755!11768-123I4;0.074695!10807-111A6;0.0203172!10790-110H7;0.84979!10798-110I6;0.571373!10786-110H3;0.498038!10591-108D6;0.37832!10593-108D8;0.644055!10590-108D5;0.542811!10026-101D8;0.473247!10096-102C6;0.612917!10168-103B6;0.0387904!10154-103A1;0.724928!10209-103G2;0.801251!10061-101H7;0.976427!10027-101D9;0.801232!10043-101F7;0.557024!10783-110G9;0.706086!10028-101E1;0.979129!10060-101H6;0.608398!10203-103F5;0.843905!10059-101H5;0.981824!10047-101G2;0.822275!10029-101E2;0.90346!10058-101H4;0.672079!10418-106C4;0.705297!10492-107B6;0.838017!10694-109G1;0.950819!10797-110I5;0.248591!10057-101H3;0.432981!10100-102D1;0.504424!10055-101H1;0.294543!10204-103F6;0.412965!10191-103E2;0.140746!10563-108A5;0.832333
|name=motif_TCNGGA
|name=motif_TCNGGA
|tomtom_result=ECM22#MA0292.1;0;0.000539489;0.256797;0.349837;6;TCAGGA;TCCGGAG;-!YER184C#MA0424.1;1;0.00213667;1.01706;0.349837;6;TCAGGA;CTCCGGAA;+!SIP4#MA0380.1;1;0.00220774;1.05089;0.349837;6;TCAGGA;CTCCGGA;+!YJL103C#MA0427.1;2;0.00633788;3.01683;0.725176;6;TCAGGA;TCTCCGGAGCT;-!GSM1#MA0308.1;10;0.00762738;3.63063;0.725176;6;TCAGGA;ATTAAAAAACTCCGGAGTATA;+!MCM1#MA0331.1;5;0.00871862;4.15006;0.753569;6;TCAGGA;CCCAATTAGGAA;+!Eip74EF#MA0026.1;-1;0.0127148;6.05224;0.80003;5;TCAGGA;CCGGAAG;+!Hand1::Tcfe2a#MA0092.1;2;0.0138853;6.6094;0.80003;6;TCAGGA;GGTCTGGCAT;+!SPIB#MA0081.1;0;0.0149371;7.11008;0.80003;6;TCAGGA;AGAGGAA;+!CAT8#MA0280.1;-1;0.0152981;7.28188;0.80003;5;TCAGGA;CCGGAA;+!ASG1#MA0275.1;-1;0.01589;7.56366;0.80003;5;TCAGGA;CCGGAA;+!RDS2#MA0362.1;1;0.0168136;8.00328;0.80003;6;TCAGGA;CTCGGGG;+!FEV#MA0156.1;-1;0.0168294;8.01079;0.80003;5;TCAGGA;CAGGAAAT;+!ASH1#MA0276.1;5;0.019449;9.25771;0.880532;5;TCAGGA;CCGGATCGGG;+
}}
}}

Latest revision as of 12:47, 7 September 2012

Full Name: motif_TCNGGA

Motif matrix
POACGT
0100060000
0206000000
0315000150001500015000
0400600000
0500600000
0660000000

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
ECM22#MA0292.100.0005394890.2567970.3498376TCAGGATCCGGAG-
YER184C#MA0424.110.002136671.017060.3498376TCAGGACTCCGGAA+
SIP4#MA0380.110.002207741.050890.3498376TCAGGACTCCGGA+
YJL103C#MA0427.120.006337883.016830.7251766TCAGGATCTCCGGAGCT-
GSM1#MA0308.1100.007627383.630630.7251766TCAGGAATTAAAAAACTCCGGAGTATA+
MCM1#MA0331.150.008718624.150060.7535696TCAGGACCCAATTAGGAA+
Eip74EF#MA0026.1-10.01271486.052240.800035TCAGGACCGGAAG+
Hand1::Tcfe2a#MA0092.120.01388536.60940.800036TCAGGAGGTCTGGCAT+
SPIB#MA0081.100.01493717.110080.800036TCAGGAAGAGGAA+
CAT8#MA0280.1-10.01529817.281880.800035TCAGGACCGGAA+
ASG1#MA0275.1-10.015897.563660.800035TCAGGACCGGAA+
RDS2#MA0362.110.01681368.003280.800036TCAGGACTCGGGG+
FEV#MA0156.1-10.01682948.010790.800035TCAGGACAGGAAAT+
ASH1#MA0276.150.0194499.257710.8805325TCAGGACCGGATCGGG+
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