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MacroAPE 1083:KCCGCCDY,motif582: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!1;0.264;17.424;124.344;121.968!2;9.768;220.704;17.16;16.368!3;74.712;139.392;49.632;0.264!4;26.664;0.264;236.808;0.264!5;0.264;192.192;57.024;...")
 
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;0.203863!10464-106H5;0.117626!10827-111C8;0.264928!10789-110H6;0.464378!10828-111C9;0.897634!10788-110H5;0.718309!10792-110H9;0.623823!10765-110E9;0.747199!10829-111D1;0.416713!10830-111D2;0.283299!10831-111D3;0.123654!10832-111D4;0.56792!10833-111D5;0.469716!10764-110E8;0.317967!10770-110F5;0.126177!10399-106A3;0.387442!10400-106A4;0.201269!10405-106A9;0.172044!10834-111D6;0.191854!10835-111D7;0.603145!10836-111D8;0.0796316!10837-111D9;0.0574756!10699-109G6;0.478177!10802-111A1;0.110838!10796-110I4;0.124984!10010-101C1;0.094475!10810-111A9;0.0499563!10421-106C7;0.0837723!10708-109H6;0.685974!12235-129G3;0.180293!12236-129G4;0.344062!12237-129G5;0.287316!10167-103B5;0.507818!10151-102I7;0.577396!10428-106D5;0.613345!10795-110I3;0.110592!10805-111A4;0.256424!10052-101G7;0.0393631!10189-103D9;0.0630058!10589-108D4;0.0064409!10425-106D2;0.360507!10427-106D4;0.0813314!10702-109G9;0.254414!10432-106D9;0.304387!10496-107C1;0.140276!10718-109I7;0.104238!10011-101C2;0.427722!10053-101G8;0.0582857!10686-109F2;0.718054!10084-102B3;0.204986!10012-101C3;0.959133!10085-102B4;0.785027!10482-107A5;0.507398!10419-106C5;0.0785741!10080-102A8;0.0166515!10760-110E4;0.0442247!10709-109H7;0.417841!10710-109H8;0.067575!10703-109H1;0.311754!10719-109I8;0.505238!10642-109A3;0.220145!10177-103C6;0.188308!10164-103B2;0.942272!10173-103C2;0.561937!10166-103B4;0.340579!10083-102B2;0.343754!10188-103D8;0.547497!10552-107I3;0.894897!10553-107I4;0.321297!10013-101C4;0.339718!10536-107G5;0.0617241!10618-108G6;0.014016!10423-106C9;0.207885!10785-110H2;0.237434!12238-129G6;0.598245!12239-129G7;0.0221239!12240-129G8;0.0992788!10416-106C2;0.0159297!10801-110I9;0.503446!10766-110F1;0.408888!10824-111C5;0.327539!10825-111C6;0.278643!10826-111C7;0.295583!10454-106G4;0.202733!10409-106B4;0.139895!10638-108I8;0.189655!10636-108I6;0.343415!10513-107D9;0.290563!10420-106C6;0.14121!10082-102B1;0.086206!10014-101C5;0.0421957!10070-101I7;0.0316148!10452-106G2;0.0569001!10453-106G3;0.146161!10449-106F8;0.328335!10042-101F6;0.312902!10069-101I6;0.780046!10193-103E4;0.145926!10631-108I1;0.74673!10438-106E6;0.259793!10488-107B2;0.230353!10196-103E7;0.54199!10071-101I8;0.273239!10071-101I8;0.031559!10041-101F5;0.487292!10451-106G1;0.0562747!10450-106F9;0.0936532!10604-108F1;0.116358!10605-108F2;0.125571!10606-108F3;0.18385!10603-108E9;0.126636!10497-107C2;0.0933054!10448-106F7;0.0852378!10643-109A4;0.00707057!10426-106D3;0.837928!10431-106D8;0.974868!10197-103E8;0.553033!10443-106F2;0.0376269!10815-111B5;0.853632!10816-111B6;0.292405!10817-111B7;0.224785!10015-101C6;0.274657!10410-106B5;0.0338801!10054-101G9;0.0177507!10758-110E2;0.0894143!10711-109H9;0.0886431!10040-101F4;0.090104!10470-106I2;0.510844!10415-106C1;0.959402!10198-103E9;0.627717!10614-108G2;0.0489717!10612-108F9;0.564046!10549-107H9;0.135226!10615-108G3;0.0246502!10487-107B1;0.133361!10433-106E1;0.338784!10688-109F4;0.111859!10444-106F3;0.771661!10444-106F3;0.302198!10485-107A8;0.419534!10413-106B8;0.210172!10175-103C4;0.0879179!10161-103A8;0.982058!12131-128D7;0.768072!10624-108H3;0.0390985!10712-109I1;0.0577752!10205-103F7;0.993866!10206-103F8;0.14277!10207-103F9;0.265511!10050-101G5;0.431674!10051-101G6;0.0324328!10016-101C7;0.139941!10046-101G1;0.332073!10778-110G4;0.243857!10633-108I3;0.932558!10818-111B8;0.074226!10819-111B9;0.0733798!10820-111C1;0.0998682!10484-107A7;0.0906897!10808-111A7;0.231628!10169-103B7;0.239913!10153-102I9;0.673976!13425-144D5;0.778884!13433-144E4;0.771881!13437-144E8;0.669081!11904-125F5;0.879088!11905-125F6;0.147905!10039-101F3;0.393612!10791-110H8;0.584363!10017-101C8;0.0735366!10045-101F9;0.0692414!10509-107D5;0.0493596!10839-111E2;0.0336455!10692-109F8;0.864795!10079-102A7;0.643182!10078-102A6;0.0811755!10721-110A1;0.135728!10569-108B2;0.0165237!10570-108B3;0.336533!10571-108B4;0.292292!10647-109A8;0.397241!10752-110D5;0.0655348!10782-110G8;0.170657!10726-110A6;0.487982!10018-101C9;0.603425!10086-102B5;0.313935!10182-103D2;0.0295119!10165-103B3;0.949036!10499-107C4;0.861026!10408-106B3;0.060342!10019-101D1;0.576588!10068-101I5;0.0192333!10075-102A3;0.0487909!10077-102A5;0.0432006!10727-110A7;0.0142294!10775-110G1;0.121709!10412-106B7;0.157927!12231-129F8;0.181991!12232-129F9;0.181472!12233-129G1;0.590826!12234-129G2;0.311691!10414-106B9;0.0877067!10170-103B8;0.053966!10183-103D3;0.461637!10150-102I6;0.622131!10174-103C3;0.600362!10155-103A2;0.416882!10038-101F2;0.79733!10838-111E1;0.581712!10759-110E3;0.199271!10514-107E1;0.0793743!10465-106H6;0.0498511!10691-109F7;0.469377!10843-111E6;0.812428!10844-111E7;0.166087!11747-123G1;0.303396!11748-123G2;0.385688!11749-123G3;0.172436!11750-123G4;0.110984!11751-123G5;0.136344!11840-124H4;0.106308!11752-123G6;0.276016!11753-123G7;0.507405!11754-123G8;0.252607!11755-123G9;0.316549!11756-123H1;0.645004!11833-124G6;0.561238!11760-123H5;0.533245!11836-124G9;0.390067!11758-123H3;0.401999!11835-124G8;0.327779!11762-123H7;0.136703!11838-124H2;0.0843019!11757-123H2;0.064767!11759-123H4;0.250695!11761-123H6;0.563312!11842-124H6;0.112866!11837-124H1;0.428!10568-108B1;0.135081!13230-141I8;0.245595!13231-141I9;0.152678!10696-109G3;0.154419!10493-107B7;0.101332!10494-107B8;0.565341!10850-111F4;0.86223!10851-111F5;0.865268!10852-111F6;0.334606!10853-111F7;0.438971!10854-111F8;0.714086!10855-111F9;0.165645!10856-111G1;0.120937!10847-111F1;0.645388!10846-111E9;0.609119!10848-111F2;0.950514!10845-111E8;0.833106!10857-111G2;0.0987186!10858-111G3;0.620774!10156-103A3;0.493117!11901-125F2;0.559776!11902-125F3;0.198728!11903-125F4;0.0819977!10689-109F5;0.212828!10648-109A9;0.768511!10784-110H1;0.122468!10744-110C6;0.0313884!10772-110F7;0.424666!10474-106I6;0.732007!10600-108E6;0.404611!10684-109E9;0.0120637!12226-129F3;0.0346763!12227-129F4;0.980791!10508-107D4;0.71746!10539-107G8;0.0957562!10607-108F4;0.228043!10555-107I6;0.112022!10774-110F9;0.253734!10637-108I7;0.231516!10663-109C6;0.21136!10728-110A8;0.216534!10729-110A9;0.0693659!10430-106D7;0.607093!10730-110B1;0.0823538!10813-111B3;0.0882463!10812-111B2;0.308959!10037-101F1;0.383187!10172-103C1;0.667419!10163-103B1;0.495624!10076-102A4;0.652395!10073-102A1;0.711911!10036-101E9;0.338681!10195-103E6;0.754508!10277-104E7;0.699263!10434-106E2;0.614016!10550-107I1;0.129998!10545-107H5;0.248272!10544-107H4;0.378203!10704-109H2;0.387237!10510-107D6;0.117976!10558-107I9;0.128309!10020-101D2;0.604794!10732-110B3;0.0877773!10049-101G4;0.434042!10698-109G5;0.630396!10437-106E5;0.162704!10417-106C3;0.674927!10035-101E8;0.648196!10171-103B9;0.573042!10157-103A4;0.561157!10034-101E7;0.616341!10072-101I9;0.627428!10199-103F1;0.327632!10200-103F2;0.115211!10697-109G4;0.0673755!10723-110A3;0.164684!10179-103C8;0.118597!10160-103A7;0.503667!10180-103C9;0.334386!10162-103A9;0.493065!10021-101D3;0.381239!10840-111E3;0.0256697!10706-109H4;0.358153!10033-101E6;0.176476!10032-101E5;0.78564!10490-107B4;0.666973!10439-106E7;0.663716!10022-101D4;0.446966!10176-103C5;0.0453038!10469-106I1;0.41527!10067-101I4;0.732113!10411-106B6;0.20359!10471-106I3;0.854722!10030-101E3;0.712534!10475-106I7;0.116381!10787-110H4;0.117405!10477-106I9;0.0412281!10695-109G2;0.206911!11771-123I7;0.675239!11772-123I8;0.916541!11773-123I9;0.667425!10093-102C3;0.201017!10442-106F1;0.0146622!10442-106F1;0.253555!10201-103F3;0.217438!10639-108I9;0.138406!11843-124H7;0.696416!11841-124H5;0.502826!10693-109F9;0.231591!10436-106E4;0.0812251!10483-107A6;0.167853!10282-104F3;0.203018!10023-101D5;0.949352!10066-101I3;0.644035!10065-101I2;0.0558826!10800-110I8;0.038633!10610-108F7;0.0955857!10841-111E4;0.0630084!10541-107H1;0.124675!10842-111E5;0.0261978!10562-108A4;0.218935!10024-101D6;0.359551!10064-101I1;0.0432095!10609-108F6;0.0370908!10048-101G3;0.21388!10781-110G7;0.404341!10181-103D1;0.0771083!10159-103A6;0.550378!10056-101H2;0.964246!10737-110B8;0.311419!10025-101D7;0.869815!10044-101F8;0.0186417!10424-106D1;0.00774847!10463-106H4;0.260305!10616-108G4;0.0746566!10486-107A9;0.0976349!10062-101H8;0.0333285!10202-103F4;0.319627!10158-103A5;0.0245723!10441-106E9;0.928369!10031-101E4;0.236101!10063-101H9;0.855284!10063-101H9;0.390648!11763-123H8;0.0219989!11765-123I1;0.18743!11768-123I4;0.11995!10807-111A6;0.168358!10790-110H7;0.120533!10798-110I6;0.202631!10786-110H3;0.40355!10591-108D6;0.402657!10593-108D8;0.283445!10590-108D5;0.298172!10026-101D8;0.320677!10096-102C6;0.00397702!10168-103B6;0.998657!10154-103A1;0.897195!10209-103G2;0.780037!10061-101H7;0.0284488!10027-101D9;0.0876312!10043-101F7;0.636838!10783-110G9;0.209323!10028-101E1;0.928574!10060-101H6;0.471435!10203-103F5;0.554629!10059-101H5;0.045536!10047-101G2;0.040841!10029-101E2;0.00828137!10058-101H4;0.0186887!10418-106C4;0.0540084!10492-107B6;0.616704!10694-109G1;0.710498!10797-110I5;0.334168!10057-101H3;0.0881514!10100-102D1;0.0360276!10055-101H1;0.108927!10204-103F6;0.083092!10191-103E2;0.287725!10563-108A5;0.0110506
|name=KCCGCCDY,motif582,CNhs12574,T:264.0(8.60%),B:2656.1(3.91%),P:1e-30
|name=KCCGCCDY,motif582,CNhs12574,T:264.0(8.60%),B:2656.1(3.91%),P:1e-30
|tomtom_result=CHA4#MA0283.1;2;0.00119438;0.568524;0.884055;6;GCCGCCGT;TCTCCGCC;-!ELK1#MA0028.1;2;0.00291655;1.38828;0.884055;8;GCCGCCGT;CTTCCGGCTC;-!UGA3#MA0410.1;1;0.00319512;1.52088;0.884055;7;GCCGCCGT;TCCCGCCG;-!STP1#MA0394.1;-1;0.00473208;2.25247;0.884055;7;GCCGCCGT;GCGCCGCA;-!YLL054C#MA0429.1;0;0.00528467;2.5155;0.884055;7;GCCGCCGT;TCGGCCG;-!RDS1#MA0361.1;0;0.00614536;2.92519;0.884055;7;GCCGCCGT;CCGGCCG;-!LEU3#MA0324.1;-1;0.00650041;3.09419;0.884055;7;GCCGCCGT;CCGGTAACGG;-!CRZ1#MA0285.1;1;0.00821153;3.90869;0.977172;8;GCCGCCGT;CTAAGCCAC;+!Zfx#MA0146.1;0;0.0122209;5.81715;1;8;GCCGCCGT;GGGGCCGAGGCCTG;+!RDR1#MA0360.1;2;0.0149729;7.12711;1;6;GCCGCCGT;GTTCCGCA;-!SUT1#MA0399.1;1;0.0166708;7.93529;1;6;GCCGCCGT;CCCCGCG;-!NDT80#MA0343.1;13;0.0171872;8.18112;1;8;GCCGCCGT;TTGCGTTTTTGTGGCCGGAAA;-
}}
}}

Latest revision as of 12:48, 7 September 2012

Full Name: KCCGCCDY,motif582,CNhs12574,T:264.0(8.60%),B:2656.1(3.91%),P:1e-30

Motif matrix
POACGT
10.26417.424124.344121.968
29.768220.70417.1616.368
374.712139.39249.6320.264
426.6640.264236.8080.264
50.264192.19257.02414.52
614.52131.47251.74466.264
787.3840.264101.90474.448
80.528100.58440.92121.704

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
CHA4#MA0283.120.001194380.5685240.8840556GCCGCCGTTCTCCGCC-
ELK1#MA0028.120.002916551.388280.8840558GCCGCCGTCTTCCGGCTC-
UGA3#MA0410.110.003195121.520880.8840557GCCGCCGTTCCCGCCG-
STP1#MA0394.1-10.004732082.252470.8840557GCCGCCGTGCGCCGCA-
YLL054C#MA0429.100.005284672.51550.8840557GCCGCCGTTCGGCCG-
RDS1#MA0361.100.006145362.925190.8840557GCCGCCGTCCGGCCG-
LEU3#MA0324.1-10.006500413.094190.8840557GCCGCCGTCCGGTAACGG-
CRZ1#MA0285.110.008211533.908690.9771728GCCGCCGTCTAAGCCAC+
Zfx#MA0146.100.01222095.8171518GCCGCCGTGGGGCCGAGGCCTG+
RDR1#MA0360.120.01497297.1271116GCCGCCGTGTTCCGCA-
SUT1#MA0399.110.01667087.9352916GCCGCCGTCCCCGCG-
NDT80#MA0343.1130.01718728.1811218GCCGCCGTTTGCGTTTTTGTGGCCGGAAA-
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