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MacroAPE 1083:Motif440: Difference between revisions

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6;0.357351!10828-111C9;0.375294!10788-110H5;0.338887!10792-110H9;0.266786!10765-110E9;0.270802!10829-111D1;0.367209!10830-111D2;0.236958!10831-111D3;0.461715!10832-111D4;0.376135!10833-111D5;0.526557!10764-110E8;0.377168!10770-110F5;0.484299!10399-106A3;0.274992!10400-106A4;0.267896!10405-106A9;0.285755!10834-111D6;0.285828!10835-111D7;0.311236!10836-111D8;0.103072!10837-111D9;0.102891!10699-109G6;0.29581!10802-111A1;0.398935!10796-110I4;0.352012!10010-101C1;0.307386!10810-111A9;0.0242027!10421-106C7;0.236829!10708-109H6;0.302484!12235-129G3;0.368017!12236-129G4;0.403198!12237-129G5;0.605371!10167-103B5;0.288171!10151-102I7;0.0791581!10428-106D5;0.063024!10795-110I3;0.10685!10805-111A4;0.29947!10052-101G7;0.0662909!10189-103D9;0.103705!10589-108D4;0.139142!10425-106D2;0.133708!10427-106D4;0.28276!10702-109G9;0.348179!10432-106D9;0.642397!10496-107C1;0.00338622!10718-109I7;0.0201655!10011-101C2;0.260967!10053-101G8;0.147115!10686-109F2;0.907768!10084-102B3;0.606998!10012-101C3;0.0879208!10085-102B4;0.0575402!10482-107A5;0.128287!10419-106C5;0.230861!10080-102A8;0.357793!10760-110E4;0.337746!10709-109H7;0.00720649!10710-109H8;0.0599718!10703-109H1;0.0834437!10719-109I8;0.505409!10642-109A3;0.38066!10177-103C6;0.537673!10164-103B2;0.0588167!10173-103C2;0.0514129!10166-103B4;0.0496158!10083-102B2;0.0615837!10188-103D8;0.0775426!10552-107I3;0.0847821!10553-107I4;0.181207!10013-101C4;0.581928!10536-107G5;0.0921868!10618-108G6;0.424861!10423-106C9;0.00697546!10785-110H2;0.0238548!12238-129G6;0.00127058!12239-129G7;0.52994!12240-129G8;0.299215!10416-106C2;0.734745!10801-110I9;0.20704!10766-110F1;0.437603!10824-111C5;0.286094!10825-111C6;0.251533!10826-111C7;0.269215!10454-106G4;0.233612!10409-106B4;0.240366!10638-108I8;0.410459!10636-108I6;0.0429814!10513-107D9;0.275812!10420-106C6;0.0185089!10082-102B1;0.998888!10014-101C5;0.52432!10070-101I7;0.326586!10452-106G2;0.353125!10453-106G3;0.274899!10449-106F8;0.244801!10042-101F6;0.251666!10069-101I6;0.0396493!10193-103E4;0.180488!10631-108I1;0.0625288!10438-106E6;0.418018!10488-107B2;0.474405!10196-103E7;0.660677!10071-101I8;0.196182!10071-101I8;0.217474!10041-101F5;0.084737!10451-106G1;0.00772574!10450-106F9;0.36135!10604-108F1;0.503996!10605-108F2;0.23651!10606-108F3;0.107449!10603-108E9;0.200633!10497-107C2;0.270861!10448-106F7;0.54869!10643-109A4;0.332803!10426-106D3;0.0202745!10431-106D8;0.140322!10197-103E8;0.016485!10443-106F2;0.151032!10815-111B5;0.849653!10816-111B6;0.0291658!10817-111B7;0.0270343!10015-101C6;0.02101!10410-106B5;0.311861!10054-101G9;0.971006!10758-110E2;0.143239!10711-109H9;0.0263569!10040-101F4;0.0739907!10470-106I2;0.0585229!10415-106C1;0.0252778!10198-103E9;0.135747!10614-108G2;0.305591!10612-108F9;0.0613984!10549-107H9;0.205236!10615-108G3;0.123281!10487-107B1;0.885288!10433-106E1;0.140906!10688-109F4;0.0401516!10444-106F3;0.0482161!10444-106F3;0.180543!10485-107A8;0.510588!10413-106B8;0.0172786!10175-103C4;0.147632!10161-103A8;0.0817116!12131-128D7;0.0493765!10624-108H3;0.877573!10712-109I1;0.897624!10205-103F7;0.348627!10206-103F8;0.110518!10207-103F9;0.142659!10050-101G5;0.229952!10051-101G6;0.735809!10016-101C7;0.312338!10046-101G1;0.126725!10778-110G4;0.0660342!10633-108I3;0.365816!10818-111B8;0.164332!10819-111B9;0.133562!10820-111C1;0.108091!10484-107A7;0.137343!10808-111A7;0.0650859!10169-103B7;0.295841!10153-102I9;0.0876106!13425-144D5;0.0652665!13433-144E4;0.315256!13437-144E8;0.342636!11904-125F5;0.314313!11905-125F6;0.903895!10039-101F3;0.549018!10791-110H8;0.0722498!10017-101C8;0.00033253!10045-101F9;0.271234!10509-107D5;0.120111!10839-111E2;0.134831!10692-109F8;0.0284089!10079-102A7;0.0345253!10078-102A6;0.131182!10721-110A1;0.335015!10569-108B2;0.338235!10570-108B3;0.600706!10571-108B4;0.512045!10647-109A8;0.581538!10752-110D5;0.812096!10782-110G8;0.677168!10726-110A6;0.957844!10018-101C9;0.0871742!10086-102B5;0.730771!10182-103D2;0.58322!10165-103B3;0.0968021!10499-107C4;0.0598228!10408-106B3;0.00181345!10019-101D1;0.334949!10068-101I5;0.113014!10075-102A3;0.0351324!10077-102A5;0.263535!10727-110A7;0.695627!10775-110G1;0.219986!10412-106B7;0.43468!12231-129F8;0.755048!12232-129F9;0.138941!12233-129G1;0.075896!12234-129G2;0.0942283!10414-106B9;0.0800738!10170-103B8;0.666009!10183-103D3;0.0689583!10150-102I6;0.0718797!10174-103C3;0.0611006!10155-103A2;0.118651!10038-101F2;0.0661426!10838-111E1;0.0698867!10759-110E3;0.249661!10514-107E1;0.000411673!10465-106H6;0.297493!10691-109F7;0.699735!10843-111E6;0.0985376!10844-111E7;0.302254!11747-123G1;0.907089!11748-123G2;0.453408!11749-123G3;0.919952!11750-123G4;0.772192!11751-123G5;0.620934!11840-124H4;0.40448!11752-123G6;0.443898!11753-123G7;0.431908!11754-123G8;0.353744!11755-123G9;0.380966!11756-123H1;0.0391412!11833-124G6;0.374446!11760-123H5;0.105017!11836-124G9;0.561093!11758-123H3;0.915867!11835-124G8;0.985741!11762-123H7;0.297693!11838-124H2;0.745636!11757-123H2;0.670599!11759-123H4;0.784633!11761-123H6;0.28049!11842-124H6;0.899649!11837-124H1;0.690526!10568-108B1;0.562242!13230-141I8;0.424202!13231-141I9;0.762259!10696-109G3;0.846693!10493-107B7;0.0399578!10494-107B8;0.0180734!10850-111F4;0.0947091!10851-111F5;0.0673868!10852-111F6;0.0990487!10853-111F7;0.252778!10854-111F8;0.128733!10855-111F9;0.197993!10856-111G1;0.258407!10847-111F1;0.102584!10846-111E9;0.103324!10848-111F2;0.116917!10845-111E8;0.0843952!10857-111G2;0.112215!10858-111G3;0.0201118!10156-103A3;0.0156184!11901-125F2;0.0533965!11902-125F3;0.823456!11903-125F4;0.807336!10689-109F5;0.962301!10648-109A9;0.228273!10784-110H1;0.00539556!10744-110C6;0.191188!10772-110F7;0.232121!10474-106I6;0.302878!10600-108E6;0.453228!10684-109E9;0.225396!12226-129F3;0.625841!12227-129F4;0.173691!10508-107D4;0.21024!10539-107G8;0.247571!10607-108F4;0.771517!10555-107I6;0.869102!10774-110F9;0.221113!10637-108I7;0.334113!10663-109C6;0.148158!10728-110A8;0.697406!10729-110A9;0.560965!10430-106D7;0.816388!10730-110B1;0.529646!10813-111B3;0.521575!10812-111B2;0.967338!10037-101F1;0.133521!10172-103C1;0.0628795!10163-103B1;0.0792637!10076-102A4;0.0658423!10073-102A1;0.079076!10036-101E9;0.068653!10195-103E6;0.0828315!10277-104E7;0.0661757!10434-106E2;0.0166889!10550-107I1;0.0118122!10545-107H5;0.00274053!10544-107H4;0.119836!10704-109H2;0.100327!10510-107D6;0.652106!10558-107I9;0.991436!10020-101D2;0.459975!10732-110B3;0.0448665!10049-101G4;0.229109!10698-109G5;0.543961!10437-106E5;0.00319331!10417-106C3;0.00835598!10035-101E8;0.0684561!10171-103B9;0.081299!10157-103A4;0.0626456!10034-101E7;0.0715493!10072-101I9;0.0747982!10199-103F1;0.0890195!10200-103F2;0.959567!10697-109G4;0.171878!10723-110A3;0.286321!10179-103C8;0.0245675!10160-103A7;0.104953!10180-103C9;0.0426946!10162-103A9;0.144776!10021-101D3;0.059344!10840-111E3;0.395574!10706-109H4;0.513955!10033-101E6;0.714476!10032-101E5;0.0915405!10490-107B4;0.0784148!10439-106E7;0.013881!10022-101D4;0.00106634!10176-103C5;0.111434!10469-106I1;0.0764254!10067-101I4;0.0196807!10411-106B6;0.168271!10471-106I3;0.307519!10030-101E3;0.284034!10475-106I7;0.0660216!10787-110H4;0.666289!10477-106I9;0.170472!10695-109G2;0.191658!11771-123I7;0.599718!11772-123I8;0.715283!11773-123I9;0.438617!10093-102C3;0.304905!10442-106F1;0.489143!10442-106F1;0.252367!10201-103F3;0.306871!10639-108I9;0.16236!11843-124H7;0.191452!11841-124H5;0.302842!10693-109F9;0.735059!10436-106E4;0.318868!10483-107A6;0.273599!10282-104F3;0.0514731!10023-101D5;0.388953!10066-101I3;0.238259!10065-101I2;0.168953!10800-110I8;0.150911!10610-108F7;0.224323!10841-111E4;0.341629!10541-107H1;0.814838!10842-111E5;0.703304!10562-108A4;0.845426!10024-101D6;0.908415!10064-101I1;0.445784!10609-108F6;0.457935!10048-101G3;0.342814!10781-110G7;0.152563!10181-103D1;0.833506!10159-103A6;0.0662227!10056-101H2;0.0279546!10737-110B8;0.0995413!10025-101D7;0.679421!10044-101F8;0.406248!10424-106D1;0.0867903!10463-106H4;0.612137!10616-108G4;0.25653!10486-107A9;0.0742462!10062-101H8;0.0816923!10202-103F4;0.314655!10158-103A5;0.331256!10441-106E9;0.0347129!10031-101E4;0.821747!10063-101H9;0.0733621!10063-101H9;0.0832175!11763-123H8;0.164607!11765-123I1;0.891433!11768-123I4;0.456782!10807-111A6;0.642128!10790-110H7;0.343388!10798-110I6;0.194336!10786-110H3;0.605873!10591-108D6;0.2389!10593-108D8;0.909125!10590-108D5;0.524063!10026-101D8;0.443599!10096-102C6;0.136961!10168-103B6;0.672208!10154-103A1;0.0600402!10209-103G2;0.040672!10061-101H7;0.225332!10027-101D9;0.185014!10043-101F7;0.565831!10783-110G9;0.120479!10028-101E1;0.0862197!10060-101H6;0.254499!10203-103F5;0.255306!10059-101H5;0.41446!10047-101G2;0.359222!10029-101E2;0.379093!10058-101H4;0.199414!10418-106C4;0.174414!10492-107B6;0.000809716!10694-109G1;0.0622481!10797-110I5;0.746905!10057-101H3;0.196584!10100-102D1;0.450118!10055-101H1;0.0291316!10204-103F6;0.162558!10191-103E2;0.210569!10563-108A5;0.0195679
|name=motif440
|name=motif440
|tomtom_result=SP1#MA0079.2;2;0.00221906;1.05627;0.806561;8;GGAAGGGG;GGGGGCGGGG;-!GABPA#MA0062.2;2;0.00333341;1.5867;0.806561;8;GGAAGGGG;CCGGAAGTGGC;+!Klf4#MA0039.1;4;0.00544733;2.59293;0.806561;6;GGAAGGGG;TAAAGGAAGG;+!EWSR1-FLI1#MA0149.1;12;0.00567084;2.69932;0.806561;6;GGAAGGGG;GGAAGGAAGGAAGGAAGG;+!MSN4#MA0342.1;-3;0.00607577;2.89207;0.806561;5;GGAAGGGG;AGGGG;+!RGM1#MA0366.1;-3;0.00644267;3.06671;0.806561;5;GGAAGGGG;AGGGG;+!SPI1#MA0080.2;1;0.00692697;3.29724;0.806561;5;GGAAGGGG;CGGAAG;+!IXR1#MA0323.1;5;0.00723227;3.44256;0.806561;8;GGAAGGGG;AAGCCGGAAGCGGGG;+!GCR2#MA0305.1;1;0.0083978;3.99735;0.806561;6;GGAAGGGG;AGGAAGC;-!MSN2#MA0341.1;-3;0.00914636;4.35367;0.806561;5;GGAAGGGG;AGGGG;+!GIS1#MA0306.1;0;0.00933416;4.44306;0.806561;8;GGAAGGGG;TTTAGGGGT;-!YER130C#MA0423.1;0;0.0112276;5.34434;0.889325;8;GGAAGGGG;AATAGGGGT;-!SPI1#MA0080.2;1;0.0122532;5.83254;0.895905;6;GGAAGGGG;AGGAAGT;+!MZF1_5-13#MA0057.1;0;0.013537;6.44361;0.91907;8;GGAAGGGG;GGAGGGGGAA;+!Kr#MA0452.1;1;0.0153714;7.31677;0.966506;8;GGAAGGGG;CAAAAGGGTTA;+!ZEB1#MA0103.1;-2;0.0162694;7.74421;0.966506;6;GGAAGGGG;CAGGTG;-!Eip74EF#MA0026.1;2;0.0188627;8.97863;0.99843;5;GGAAGGGG;CCGGAAG;+!GABPA#MA0062.2;3;0.0200478;9.54276;0.99843;7;GGAAGGGG;ACCGGAAGAG;+
}}
}}

Latest revision as of 13:08, 7 September 2012

Full Name: motif440

Motif matrix
POACGT
01179712964347816654
0200623700
0362370000
0462370000
0500623700
0600623700
07230456347243158663
0800623700

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
SP1#MA0079.220.002219061.056270.8065618GGAAGGGGGGGGGCGGGG-
GABPA#MA0062.220.003333411.58670.8065618GGAAGGGGCCGGAAGTGGC+
Klf4#MA0039.140.005447332.592930.8065616GGAAGGGGTAAAGGAAGG+
EWSR1-FLI1#MA0149.1120.005670842.699320.8065616GGAAGGGGGGAAGGAAGGAAGGAAGG+
MSN4#MA0342.1-30.006075772.892070.8065615GGAAGGGGAGGGG+
RGM1#MA0366.1-30.006442673.066710.8065615GGAAGGGGAGGGG+
SPI1#MA0080.210.006926973.297240.8065615GGAAGGGGCGGAAG+
IXR1#MA0323.150.007232273.442560.8065618GGAAGGGGAAGCCGGAAGCGGGG+
GCR2#MA0305.110.00839783.997350.8065616GGAAGGGGAGGAAGC-
MSN2#MA0341.1-30.009146364.353670.8065615GGAAGGGGAGGGG+
GIS1#MA0306.100.009334164.443060.8065618GGAAGGGGTTTAGGGGT-
YER130C#MA0423.100.01122765.344340.8893258GGAAGGGGAATAGGGGT-
SPI1#MA0080.210.01225325.832540.8959056GGAAGGGGAGGAAGT+
MZF1_5-13#MA0057.100.0135376.443610.919078GGAAGGGGGGAGGGGGAA+
Kr#MA0452.110.01537147.316770.9665068GGAAGGGGCAAAAGGGTTA+
ZEB1#MA0103.1-20.01626947.744210.9665066GGAAGGGGCAGGTG-
Eip74EF#MA0026.120.01886278.978630.998435GGAAGGGGCCGGAAG+
GABPA#MA0062.230.02004789.542760.998437GGAAGGGGACCGGAAGAG+
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