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MacroAPE 1083:SP4 f1: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!1;4.93193717277488;3.801047120418845;13.476439790575943;0.7853403141361276!2;1.0052356020942421;6.910994764397926;14.07329842931939;1.00523560...")
 
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856!10568-108B1;0.100785!13230-141I8;0.386915!13231-141I9;0.613937!10696-109G3;0.601051!10493-107B7;0.013377!10494-107B8;0.0342848!10850-111F4;0.0403422!10851-111F5;0.0526328!10852-111F6;0.00823051!10853-111F7;0.00310094!10854-111F8;0.283021!10855-111F9;0.0171002!10856-111G1;0.015035!10847-111F1;0.0243311!10846-111E9;0.00660183!10848-111F2;0.0362038!10845-111E8;0.0430946!10857-111G2;0.0948593!10858-111G3;0.156345!10156-103A3;0.00289045!11901-125F2;0.306904!11902-125F3;0.795006!11903-125F4;0.458543!10689-109F5;0.74947!10648-109A9;0.925029!10784-110H1;0.217415!10744-110C6;0.954218!10772-110F7;0.956131!10474-106I6;0.379798!10600-108E6;0.0220125!10684-109E9;0.00176978!12226-129F3;0.0906161!12227-129F4;0.0302563!10508-107D4;0.0396931!10539-107G8;0.222157!10607-108F4;0.239847!10555-107I6;0.887224!10774-110F9;0.46218!10637-108I7;0.725988!10663-109C6;0.929756!10728-110A8;0.766475!10729-110A9;0.996302!10430-106D7;0.0348344!10730-110B1;0.167509!10813-111B3;0.943684!10812-111B2;0.260907!10037-101F1;0.0987908!10172-103C1;0.264445!10163-103B1;0.454245!10076-102A4;0.407971!10073-102A1;0.440174!10036-101E9;0.443107!10195-103E6;0.412354!10277-104E7;0.302697!10434-106E2;0.234523!10550-107I1;0.79982!10545-107H5;0.653257!10544-107H4;0.24493!10704-109H2;0.529812!10510-107D6;0.160222!10558-107I9;0.0156347!10020-101D2;0.540618!10732-110B3;0.182798!10049-101G4;0.180649!10698-109G5;0.240618!10437-106E5;0.938481!10417-106C3;0.036126!10035-101E8;0.599904!10171-103B9;0.381204!10157-103A4;0.47878!10034-101E7;0.283747!10072-101I9;0.348183!10199-103F1;0.390907!10200-103F2;0.125015!10697-109G4;0.416514!10723-110A3;0.963257!10179-103C8;0.496637!10160-103A7;0.865649!10180-103C9;0.68865!10162-103A9;0.879467!10021-101D3;0.713124!10840-111E3;0.942967!10706-109H4;0.511864!10033-101E6;0.246923!10032-101E5;0.491014!10490-107B4;0.501212!10439-106E7;0.845251!10022-101D4;0.594562!10176-103C5;0.210014!10469-106I1;0.429684!10067-101I4;0.724781!10411-106B6;0.281562!10471-106I3;0.00456011!10030-101E3;0.770712!10475-106I7;0.478999!10787-110H4;0.719642!10477-106I9;0.42878!10695-109G2;0.0717583!11771-123I7;0.0315775!11772-123I8;0.862493!11773-123I9;0.908566!10093-102C3;0.714686!10442-106F1;0.232758!10442-106F1;0.0141733!10201-103F3;0.0161261!10639-108I9;0.0785822!11843-124H7;0.22426!11841-124H5;0.167013!10693-109F9;0.0700734!10436-106E4;0.777681!10483-107A6;0.457026!10282-104F3;0.667358!10023-101D5;0.389591!10066-101I3;0.583945!10065-101I2;0.545605!10800-110I8;0.679766!10610-108F7;0.402179!10841-111E4;0.945172!10541-107H1;0.0874617!10842-111E5;0.548374!10562-108A4;0.878802!10024-101D6;0.748244!10064-101I1;0.777891!10609-108F6;0.759803!10048-101G3;0.616391!10781-110G7;0.231133!10181-103D1;0.606541!10159-103A6;0.613989!10056-101H2;0.379045!10737-110B8;0.905591!10025-101D7;0.141063!10044-101F8;0.871166!10424-106D1;0.842605!10463-106H4;0.935987!10616-108G4;0.946262!10486-107A9;0.458515!10062-101H8;0.804562!10202-103F4;0.228023!10158-103A5;0.11218!10441-106E9;0.792533!10031-101E4;0.797814!10063-101H9;0.526604!10063-101H9;0.361356!11763-123H8;0.76799!11765-123I1;0.211082!11768-123I4;0.304009!10807-111A6;0.192708!10790-110H7;0.259395!10798-110I6;0.605076!10786-110H3;0.906545!10591-108D6;0.656001!10593-108D8;0.59669!10590-108D5;0.306917!10026-101D8;0.685243!10096-102C6;0.157043!10168-103B6;0.62625!10154-103A1;0.662595!10209-103G2;0.306738!10061-101H7;0.423086!10027-101D9;0.460344!10043-101F7;0.213339!10783-110G9;0.18034!10028-101E1;0.119461!10060-101H6;0.321085!10203-103F5;0.718347!10059-101H5;0.132465!10047-101G2;0.184719!10029-101E2;0.115454!10058-101H4;0.85842!10418-106C4;0.376122!10492-107B6;0.0925875!10694-109G1;0.116002!10797-110I5;0.00625503!10057-101H3;0.316717!10100-102D1;0.656888!10055-101H1;0.0605979!10204-103F6;0.256046!10191-103E2;0.142921!10563-108A5;0.68894
|name=SP4_f1
|name=SP4_f1
|tomtom_result=SP1#MA0079.2;-6;1.03031e-05;0.0049043;0.00959545;10;GGGGCCAGGGGGGGGGCGGGGCCG;GGGGGCGGGG;-!opa#MA0456.1;-5;7.49923e-05;0.0356963;0.0349207;12;GGGGCCAGGGGGGGGGCGGGGCCG;CAGCGGGGGGTC;-!Klf4#MA0039.2;-7;0.000323414;0.153945;0.0632492;10;GGGGCCAGGGGGGGGGCGGGGCCG;TGGGTGGGGC;+!YGR067C#MA0425.1;-3;0.000403767;0.192193;0.0632492;14;GGGGCCAGGGGGGGGGCGGGGCCG;TGAAAAAGTGGGGT;-!SP1#MA0079.2;-7;0.000471498;0.224433;0.0632492;10;GGGGCCAGGGGGGGGGCGGGGCCG;GGGGCGGGGT;+!Pax4#MA0068.1;0;0.000498132;0.237111;0.0632492;24;GGGGCCAGGGGGGGGGCGGGGCCG;GGGGGGGGAGTGGAGTATTGGAAATTTTTC;-!btd#MA0443.1;-10;0.000533242;0.253823;0.0632492;10;GGGGCCAGGGGGGGGGCGGGGCCG;AGGGGGCGGA;+!MIG2#MA0338.1;-9;0.000599782;0.285496;0.0632492;7;GGGGCCAGGGGGGGGGCGGGGCCG;TGCGGGG;-!PLAG1#MA0163.1;0;0.000611226;0.290944;0.0632492;14;GGGGCCAGGGGGGGGGCGGGGCCG;GGGGCCCAAGGGGG;+!abi4#MA0123.1;-8;0.000861915;0.410272;0.0802713;10;GGGGCCAGGGGGGGGGCGGGGCCG;GGGGGCACCG;-!RREB1#MA0073.1;0;0.00139622;0.6646;0.110909;20;GGGGCCAGGGGGGGGGCGGGGCCG;TGGGGGGGGGTGGTTTGGGG;-!MIG3#MA0339.1;-9;0.00142907;0.680237;0.110909;7;GGGGCCAGGGGGGGGGCGGGGCCG;TGCGGGG;-!Pax5#MA0014.1;-1;0.00164805;0.784471;0.118065;20;GGGGCCAGGGGGGGGGCGGGGCCG;GGAGCACTGAAGCGTAACCG;+!STP2#MA0395.1;-4;0.00228409;1.08723;0.151943;20;GGGGCCAGGGGGGGGGCGGGGCCG;TGATCGGCGCCGCACGACGA;+!CTCF#MA0139.1;-1;0.00278077;1.32365;0.172651;19;GGGGCCAGGGGGGGGGCGGGGCCG;TGGCCACCAGGGGGCGCTA;+!Macho-1#MA0118.1;-7;0.00319326;1.51999;0.174897;9;GGGGCCAGGGGGGGGGCGGGGCCG;TGGGGGGTC;+!MSN2#MA0341.1;-11;0.00350891;1.67024;0.174897;5;GGGGCCAGGGGGGGGGCGGGGCCG;AGGGG;+!YML081W#MA0431.1;-8;0.00356813;1.69843;0.174897;9;GGGGCCAGGGGGGGGGCGGGGCCG;GTGCGGGGT;-!MIG1#MA0337.1;-9;0.00421342;2.00559;0.196201;7;GGGGCCAGGGGGGGGGCGGGGCCG;GCGGGGG;-!SUT1#MA0399.1;-9;0.00448883;2.13668;0.199072;7;GGGGCCAGGGGGGGGGCGGGGCCG;CGCGGGG;+!Zfx#MA0146.1;-5;0.00470431;2.23925;0.199145;14;GGGGCCAGGGGGGGGGCGGGGCCG;CAGGCCTCGGCCCC;-!IXR1#MA0323.1;-1;0.00651377;3.10056;0.263755;15;GGGGCCAGGGGGGGGGCGGGGCCG;AAGCCGGAAGCGGGG;+!DOT6#MA0351.1;-5;0.00798208;3.79947;0.300995;19;GGGGCCAGGGGGGGGGCGGGGCCG;AGGATGCGATGAGGTGCAGAA;-!Egr1#MA0162.1;-8;0.00834212;3.97085;0.300995;11;GGGGCCAGGGGGGGGGCGGGGCCG;TGCGTGGGCGT;+!YPR022C#MA0436.1;-7;0.0087566;4.16814;0.300995;7;GGGGCCAGGGGGGGGGCGGGGCCG;CGTGGGG;-!TFAP2A#MA0003.1;-3;0.00925574;4.40573;0.300995;9;GGGGCCAGGGGGGGGGCGGGGCCG;GCCCGGGGG;+!INSM1#MA0155.1;-2;0.00949444;4.51935;0.300995;12;GGGGCCAGGGGGGGGGCGGGGCCG;TGTCAGGGGGCG;+!UGA3#MA0410.1;-8;0.00962812;4.58299;0.300995;8;GGGGCCAGGGGGGGGGCGGGGCCG;CGGCGGGA;+!CRZ1#MA0285.1;-12;0.00973623;4.63444;0.300995;9;GGGGCCAGGGGGGGGGCGGGGCCG;GTGGCTTAG;-!ADR1#MA0268.1;-8;0.0104232;4.96147;0.300995;7;GGGGCCAGGGGGGGGGCGGGGCCG;GTGGGGT;-!RPN4#MA0373.1;-11;0.0104232;4.96147;0.300995;7;GGGGCCAGGGGGGGGGCGGGGCCG;GGTGGCG;+!MSN4#MA0342.1;-6;0.0106654;5.07674;0.300995;5;GGGGCCAGGGGGGGGGCGGGGCCG;AGGGG;+!MZF1_5-13#MA0057.1;-7;0.0132641;6.31371;0.360371;10;GGGGCCAGGGGGGGGGCGGGGCCG;GGAGGGGGAA;+!ESR1#MA0112.2;-1;0.0135432;6.44658;0.360371;20;GGGGCCAGGGGGGGGGCGGGGCCG;AGGTCAGGGTGACCTGGGCC;-!RGM1#MA0366.1;-6;0.0142019;6.76012;0.367401;5;GGGGCCAGGGGGGGGGCGGGGCCG;AGGGG;+!RSC30#MA0375.1;-12;0.0162596;7.73958;0.384022;8;GGGGCCAGGGGGGGGGCGGGGCCG;CGCGCGCG;-!REI1#MA0364.1;-4;0.0163319;7.77397;0.384022;7;GGGGCCAGGGGGGGGGCGGGGCCG;TCAGGGG;-!RXR::RAR_DR5#MA0159.1;-1;0.0164938;7.85104;0.384022;17;GGGGCCAGGGGGGGGGCGGGGCCG;AGGTCATGGAGAGGTCA;+!Mycn#MA0104.2;-3;0.018301;8.71127;0.408299;10;GGGGCCAGGGGGGGGGCGGGGCCG;GCCACGTGCG;-!MET31#MA0333.1;-9;0.0184133;8.76473;0.408299;9;GGGGCCAGGGGGGGGGCGGGGCCG;GGTGTGGCG;+!hkb#MA0450.1;-7;0.0202403;9.63441;0.438374;9;GGGGCCAGGGGGGGGGCGGGGCCG;GGGGCGTGA;+
}}
}}

Latest revision as of 13:23, 7 September 2012

Full Name: SP4_f1

Motif matrix
POACGT
14.931937172774883.80104712041884513.4764397905759430.7853403141361276
21.00523560209424216.91099476439792614.073298429319391.0052356020942421
35.9057591623036720.012.9424083769633784.14659685863875
43.76963350785340533.01570680628273811.0575916230366775.151832460733004
52.010471204188484214.1989528795811736.7853403141361440.0
61.005235602094242116.2094240837696584.7748691099476591.0052356020942421
712.3141361256544712.89005235602095667.7905759162303740.0
81.00523560209424214.020942408376968513.8219895287958274.14659685863875
90.02.010471204188484217.214659685863913.7696335078534053
100.02.010471204188484217.968586387434583.015706806282738
111.00523560209424213.89528795811518717.089005235602131.0052356020942421
122.01047120418848427.16230366492148813.8219895287958270.0
130.01.13089005235602421.863874345549790.0
141.00523560209424212.010471204188484218.848167539267051.130890052356024
151.00523560209424215.02617801047122315.9581151832460951.0052356020942421
160.01.005235602094242121.989528795811570.0
171.759162303664925511.05759162303667710.1780104712042050.0
180.01.005235602094242119.8534031413613052.1361256544502663
192.13612565445026636.03141361256545414.827225130890080.0
203.8952879581151877.03664921465970711.0575916230366771.0052356020942421
210.08.293193717277514.70157068062830.0
223.01570680628273810.6806282722513316.1570680628272363.14136125654452
230.013.947643979057618.0418848167539371.0052356020942421
245.4345549738220075.05759162303666211.2146596858638961.2879581151832475

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
SP1#MA0079.2-61.03031e-050.00490430.0095954510GGGGCCAGGGGGGGGGCGGGGCCGGGGGGCGGGG-
opa#MA0456.1-57.49923e-050.03569630.034920712GGGGCCAGGGGGGGGGCGGGGCCGCAGCGGGGGGTC-
Klf4#MA0039.2-70.0003234140.1539450.063249210GGGGCCAGGGGGGGGGCGGGGCCGTGGGTGGGGC+
YGR067C#MA0425.1-30.0004037670.1921930.063249214GGGGCCAGGGGGGGGGCGGGGCCGTGAAAAAGTGGGGT-
SP1#MA0079.2-70.0004714980.2244330.063249210GGGGCCAGGGGGGGGGCGGGGCCGGGGGCGGGGT+
Pax4#MA0068.100.0004981320.2371110.063249224GGGGCCAGGGGGGGGGCGGGGCCGGGGGGGGGAGTGGAGTATTGGAAATTTTTC-
btd#MA0443.1-100.0005332420.2538230.063249210GGGGCCAGGGGGGGGGCGGGGCCGAGGGGGCGGA+
MIG2#MA0338.1-90.0005997820.2854960.06324927GGGGCCAGGGGGGGGGCGGGGCCGTGCGGGG-
PLAG1#MA0163.100.0006112260.2909440.063249214GGGGCCAGGGGGGGGGCGGGGCCGGGGGCCCAAGGGGG+
abi4#MA0123.1-80.0008619150.4102720.080271310GGGGCCAGGGGGGGGGCGGGGCCGGGGGGCACCG-
RREB1#MA0073.100.001396220.66460.11090920GGGGCCAGGGGGGGGGCGGGGCCGTGGGGGGGGGTGGTTTGGGG-
MIG3#MA0339.1-90.001429070.6802370.1109097GGGGCCAGGGGGGGGGCGGGGCCGTGCGGGG-
Pax5#MA0014.1-10.001648050.7844710.11806520GGGGCCAGGGGGGGGGCGGGGCCGGGAGCACTGAAGCGTAACCG+
STP2#MA0395.1-40.002284091.087230.15194320GGGGCCAGGGGGGGGGCGGGGCCGTGATCGGCGCCGCACGACGA+
CTCF#MA0139.1-10.002780771.323650.17265119GGGGCCAGGGGGGGGGCGGGGCCGTGGCCACCAGGGGGCGCTA+
Macho-1#MA0118.1-70.003193261.519990.1748979GGGGCCAGGGGGGGGGCGGGGCCGTGGGGGGTC+
MSN2#MA0341.1-110.003508911.670240.1748975GGGGCCAGGGGGGGGGCGGGGCCGAGGGG+
YML081W#MA0431.1-80.003568131.698430.1748979GGGGCCAGGGGGGGGGCGGGGCCGGTGCGGGGT-
MIG1#MA0337.1-90.004213422.005590.1962017GGGGCCAGGGGGGGGGCGGGGCCGGCGGGGG-
SUT1#MA0399.1-90.004488832.136680.1990727GGGGCCAGGGGGGGGGCGGGGCCGCGCGGGG+
Zfx#MA0146.1-50.004704312.239250.19914514GGGGCCAGGGGGGGGGCGGGGCCGCAGGCCTCGGCCCC-
IXR1#MA0323.1-10.006513773.100560.26375515GGGGCCAGGGGGGGGGCGGGGCCGAAGCCGGAAGCGGGG+
DOT6#MA0351.1-50.007982083.799470.30099519GGGGCCAGGGGGGGGGCGGGGCCGAGGATGCGATGAGGTGCAGAA-
Egr1#MA0162.1-80.008342123.970850.30099511GGGGCCAGGGGGGGGGCGGGGCCGTGCGTGGGCGT+
YPR022C#MA0436.1-70.00875664.168140.3009957GGGGCCAGGGGGGGGGCGGGGCCGCGTGGGG-
TFAP2A#MA0003.1-30.009255744.405730.3009959GGGGCCAGGGGGGGGGCGGGGCCGGCCCGGGGG+
INSM1#MA0155.1-20.009494444.519350.30099512GGGGCCAGGGGGGGGGCGGGGCCGTGTCAGGGGGCG+
UGA3#MA0410.1-80.009628124.582990.3009958GGGGCCAGGGGGGGGGCGGGGCCGCGGCGGGA+
CRZ1#MA0285.1-120.009736234.634440.3009959GGGGCCAGGGGGGGGGCGGGGCCGGTGGCTTAG-
ADR1#MA0268.1-80.01042324.961470.3009957GGGGCCAGGGGGGGGGCGGGGCCGGTGGGGT-
RPN4#MA0373.1-110.01042324.961470.3009957GGGGCCAGGGGGGGGGCGGGGCCGGGTGGCG+
MSN4#MA0342.1-60.01066545.076740.3009955GGGGCCAGGGGGGGGGCGGGGCCGAGGGG+
MZF1_5-13#MA0057.1-70.01326416.313710.36037110GGGGCCAGGGGGGGGGCGGGGCCGGGAGGGGGAA+
ESR1#MA0112.2-10.01354326.446580.36037120GGGGCCAGGGGGGGGGCGGGGCCGAGGTCAGGGTGACCTGGGCC-
RGM1#MA0366.1-60.01420196.760120.3674015GGGGCCAGGGGGGGGGCGGGGCCGAGGGG+
RSC30#MA0375.1-120.01625967.739580.3840228GGGGCCAGGGGGGGGGCGGGGCCGCGCGCGCG-
REI1#MA0364.1-40.01633197.773970.3840227GGGGCCAGGGGGGGGGCGGGGCCGTCAGGGG-
RXR::RAR_DR5#MA0159.1-10.01649387.851040.38402217GGGGCCAGGGGGGGGGCGGGGCCGAGGTCATGGAGAGGTCA+
Mycn#MA0104.2-30.0183018.711270.40829910GGGGCCAGGGGGGGGGCGGGGCCGGCCACGTGCG-
MET31#MA0333.1-90.01841338.764730.4082999GGGGCCAGGGGGGGGGCGGGGCCGGGTGTGGCG+
hkb#MA0450.1-70.02024039.634410.4383749GGGGCCAGGGGGGGGGCGGGGCCGGGGGCGTGA+
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