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MacroAPE 1083:4-CGGAGAGATA: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!1;178.766;1112.146;161.364;129.724!2;200.914;161.364;1066.268;153.454!3;136.052;174.02;1132.712;139.216!4;1124.802;162.946;139.216;155.036!5;1...")
 
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8;0.908809!10789-110H6;0.705444!10828-111C9;0.937355!10788-110H5;0.699657!10792-110H9;0.789058!10765-110E9;0.681906!10829-111D1;0.499053!10830-111D2;0.826435!10831-111D3;0.273898!10832-111D4;0.92455!10833-111D5;0.646155!10764-110E8;0.632498!10770-110F5;0.740777!10399-106A3;0.72669!10400-106A4;0.568267!10405-106A9;0.604856!10834-111D6;0.589921!10835-111D7;0.654641!10836-111D8;0.671556!10837-111D9;0.580858!10699-109G6;0.385695!10802-111A1;0.634275!10796-110I4;0.314279!10010-101C1;0.68416!10810-111A9;0.606078!10421-106C7;0.606824!10708-109H6;0.876976!12235-129G3;0.938661!12236-129G4;0.155035!12237-129G5;0.695009!10167-103B5;0.330549!10151-102I7;0.152802!10428-106D5;0.137279!10795-110I3;0.128047!10805-111A4;0.273694!10052-101G7;0.159539!10189-103D9;0.636243!10589-108D4;0.621904!10425-106D2;0.36893!10427-106D4;0.840586!10702-109G9;0.669867!10432-106D9;0.295149!10496-107C1;0.221061!10718-109I7;0.908542!10011-101C2;0.496472!10053-101G8;0.780818!10686-109F2;0.949971!10084-102B3;0.428567!10012-101C3;0.197105!10085-102B4;0.233551!10482-107A5;0.048793!10419-106C5;0.676311!10080-102A8;0.874824!10760-110E4;0.912692!10709-109H7;0.399689!10710-109H8;0.486327!10703-109H1;0.940747!10719-109I8;0.0297609!10642-109A3;0.147035!10177-103C6;0.0170191!10164-103B2;0.232636!10173-103C2;0.274068!10166-103B4;0.0339388!10083-102B2;0.0408611!10188-103D8;0.036978!10552-107I3;0.306942!10553-107I4;0.832082!10013-101C4;0.890511!10536-107G5;0.775445!10618-108G6;0.806065!10423-106C9;0.307661!10785-110H2;0.928909!12238-129G6;0.638976!12239-129G7;0.0939743!12240-129G8;0.215093!10416-106C2;0.199515!10801-110I9;0.457636!10766-110F1;0.903769!10824-111C5;0.513417!10825-111C6;0.433113!10826-111C7;0.384255!10454-106G4;0.426289!10409-106B4;0.503039!10638-108I8;0.308221!10636-108I6;0.503773!10513-107D9;0.540017!10420-106C6;0.993988!10082-102B1;0.154623!10014-101C5;0.874995!10070-101I7;0.984141!10452-106G2;0.867994!10453-106G3;0.818575!10449-106F8;0.92316!10042-101F6;0.94836!10069-101I6;0.193442!10193-103E4;0.484011!10631-108I1;0.23426!10438-106E6;0.857322!10488-107B2;0.851407!10196-103E7;0.896591!10071-101I8;0.656671!10071-101I8;0.92093!10041-101F5;0.0594689!10451-106G1;0.882015!10450-106F9;0.291577!10604-108F1;0.34436!10605-108F2;0.26928!10606-108F3;0.438683!10603-108E9;0.185968!10497-107C2;0.416123!10448-106F7;0.89163!10643-109A4;0.962952!10426-106D3;0.645291!10431-106D8;0.566466!10197-103E8;0.755017!10443-106F2;0.714078!10815-111B5;0.441329!10816-111B6;0.844067!10817-111B7;0.846564!10015-101C6;0.849068!10410-106B5;0.470207!10054-101G9;0.113897!10758-110E2;0.434057!10711-109H9;0.868799!10040-101F4;0.700366!10470-106I2;0.200044!10415-106C1;0.625187!10198-103E9;0.163551!10614-108G2;0.692883!10612-108F9;0.182176!10549-107H9;0.994768!10615-108G3;0.648424!10487-107B1;0.0276308!10433-106E1;0.567767!10688-109F4;0.588611!10444-106F3;0.585025!10444-106F3;0.70903!10485-107A8;0.679724!10413-106B8;0.962231!10175-103C4;0.697352!10161-103A8;0.175512!12131-128D7;0.128337!10624-108H3;0.48896!10712-109I1;0.49255!10205-103F7;0.817031!10206-103F8;0.943977!10207-103F9;0.894107!10050-101G5;0.833678!10051-101G6;0.566184!10016-101C7;0.540571!10046-101G1;0.98517!10778-110G4;0.478019!10633-108I3;0.299743!10818-111B8;0.663906!10819-111B9;0.939569!10820-111C1;0.916975!10484-107A7;0.891713!10808-111A7;0.655935!10169-103B7;0.83991!10153-102I9;0.216079!13425-144D5;0.174311!13433-144E4;0.973501!13437-144E8;0.895128!11904-125F5;0.889633!11905-125F6;0.847516!10039-101F3;0.826475!10791-110H8;0.1943!10017-101C8;0.619301!10045-101F9;0.642617!10509-107D5;0.511814!10839-111E2;0.883728!10692-109F8;0.404919!10079-102A7;0.858471!10078-102A6;0.962445!10721-110A1;0.819508!10569-108B2;0.835647!10570-108B3;0.315973!10571-108B4;0.183711!10647-109A8;0.389736!10752-110D5;0.794789!10782-110G8;0.148916!10726-110A6;0.188407!10018-101C9;0.92035!10086-102B5;0.364115!10182-103D2;0.867685!10165-103B3;0.100287!10499-107C4;0.114242!10408-106B3;0.670593!10019-101D1;0.791057!10068-101I5;0.644309!10075-102A3;0.761691!10077-102A5;0.610848!10727-110A7;0.795927!10775-110G1;0.98844!10412-106B7;0.547366!12231-129F8;0.204566!12232-129F9;0.338874!12233-129G1;0.437204!12234-129G2;0.363937!10414-106B9;0.562134!10170-103B8;0.820613!10183-103D3;0.344362!10150-102I6;0.188035!10174-103C3;0.198414!10155-103A2;0.122007!10038-101F2;0.149447!10838-111E1;0.214866!10759-110E3;0.0504858!10514-107E1;0.62162!10465-106H6;0.294732!10691-109F7;0.646177!10843-111E6;0.202249!10844-111E7;0.118605!11747-123G1;0.13155!11748-123G2;0.0335568!11749-123G3;0.329951!11750-123G4;0.19331!11751-123G5;0.673529!11840-124H4;0.665108!11752-123G6;0.304917!11753-123G7;0.462142!11754-123G8;0.500661!11755-123G9;0.171231!11756-123H1;0.039535!11833-124G6;0.36503!11760-123H5;0.774797!11836-124G9;0.219215!11758-123H3;0.438826!11835-124G8;0.596591!11762-123H7;0.451443!11838-124H2;0.811923!11757-123H2;0.527182!11759-123H4;0.342868!11761-123H6;0.277866!11842-124H6;0.701721!11837-124H1;0.492699!10568-108B1;0.328656!13230-141I8;0.118662!13231-141I9;0.215288!10696-109G3;0.336311!10493-107B7;0.823008!10494-107B8;0.888917!10850-111F4;0.471875!10851-111F5;0.850991!10852-111F6;0.0219838!10853-111F7;0.201956!10854-111F8;0.280496!10855-111F9;0.748883!10856-111G1;0.0442809!10847-111F1;0.266018!10846-111E9;0.824565!10848-111F2;0.48735!10845-111E8;0.316943!10857-111G2;0.897214!10858-111G3;0.35433!10156-103A3;0.210203!11901-125F2;0.183785!11902-125F3;0.512959!11903-125F4;0.570345!10689-109F5;0.677089!10648-109A9;0.694762!10784-110H1;0.526178!10744-110C6;0.26528!10772-110F7;0.741568!10474-106I6;0.595695!10600-108E6;0.849039!10684-109E9;0.763602!12226-129F3;0.209811!12227-129F4;0.320883!10508-107D4;0.181049!10539-107G8;0.0497366!10607-108F4;0.118407!10555-107I6;0.141041!10774-110F9;0.156623!10637-108I7;0.29265!10663-109C6;0.0405649!10728-110A8;0.00960815!10729-110A9;0.105756!10430-106D7;0.281164!10730-110B1;0.105441!10813-111B3;0.237691!10812-111B2;0.340848!10037-101F1;0.053059!10172-103C1;0.274581!10163-103B1;0.241209!10076-102A4;0.152316!10073-102A1;0.184379!10036-101E9;0.0399636!10195-103E6;0.230066!10277-104E7;0.259029!10434-106E2;0.104622!10550-107I1;0.423965!10545-107H5;0.957594!10544-107H4;0.065443!10704-109H2;0.461482!10510-107D6;0.399127!10558-107I9;0.73643!10020-101D2;0.0352796!10732-110B3;0.496823!10049-101G4;0.582745!10698-109G5;0.757489!10437-106E5;0.867424!10417-106C3;0.142426!10035-101E8;0.381389!10171-103B9;0.212107!10157-103A4;0.20398!10034-101E7;0.192335!10072-101I9;0.201008!10199-103F1;0.0643793!10200-103F2;0.421878!10697-109G4;0.424977!10723-110A3;0.00955976!10179-103C8;0.359457!10160-103A7;0.11206!10180-103C9;0.0720059!10162-103A9;0.374698!10021-101D3;0.293612!10840-111E3;0.964076!10706-109H4;0.971319!10033-101E6;0.511717!10032-101E5;0.123444!10490-107B4;0.222426!10439-106E7;0.897786!10022-101D4;0.786188!10176-103C5;0.59702!10469-106I1;0.291069!10067-101I4;0.788215!10411-106B6;0.212011!10471-106I3;0.538762!10030-101E3;0.303682!10475-106I7;0.222226!10787-110H4;0.0334129!10477-106I9;0.206129!10695-109G2;0.138577!11771-123I7;0.568499!11772-123I8;0.675426!11773-123I9;0.852795!10093-102C3;0.659288!10442-106F1;0.613149!10442-106F1;0.718775!10201-103F3;0.616636!10639-108I9;0.685914!11843-124H7;0.183632!11841-124H5;0.152945!10693-109F9;0.0533679!10436-106E4;0.707726!10483-107A6;0.752743!10282-104F3;0.2563!10023-101D5;0.695109!10066-101I3;0.614571!10065-101I2;0.822525!10800-110I8;0.748555!10610-108F7;0.404131!10841-111E4;0.155333!10541-107H1;0.0182953!10842-111E5;0.609833!10562-108A4;0.0199092!10024-101D6;0.491966!10064-101I1;0.841533!10609-108F6;0.724374!10048-101G3;0.90331!10781-110G7;0.833496!10181-103D1;0.372877!10159-103A6;0.121233!10056-101H2;0.154743!10737-110B8;0.264264!10025-101D7;0.126329!10044-101F8;0.990362!10424-106D1;0.627011!10463-106H4;0.844917!10616-108G4;0.924821!10486-107A9;0.315614!10062-101H8;0.125345!10202-103F4;0.579235!10158-103A5;0.44832!10441-106E9;0.104656!10031-101E4;0.0216917!10063-101H9;0.222738!10063-101H9;0.0580802!11763-123H8;0.947975!11765-123I1;0.231218!11768-123I4;0.143196!10807-111A6;0.0719951!10790-110H7;0.636675!10798-110I6;0.49249!10786-110H3;0.51024!10591-108D6;0.244187!10593-108D8;0.794413!10590-108D5;0.365508!10026-101D8;0.989674!10096-102C6;0.744419!10168-103B6;0.314636!10154-103A1;0.149169!10209-103G2;0.162636!10061-101H7;0.22803!10027-101D9;0.699861!10043-101F7;0.948646!10783-110G9;0.791373!10028-101E1;0.420403!10060-101H6;0.372331!10203-103F5;0.598726!10059-101H5;0.166265!10047-101G2;0.476466!10029-101E2;0.29258!10058-101H4;0.279936!10418-106C4;0.620674!10492-107B6;0.898673!10694-109G1;0.477871!10797-110I5;0.493335!10057-101H3;0.172633!10100-102D1;0.369027!10055-101H1;0.508427!10204-103F6;0.276593!10191-103E2;0.554008!10563-108A5;0.375078
|name=4-CGGAGAGATA,CNhs10649,BestGuess:GATA4_f1_HM09(0.689128766006666),T:1582.0(49.30%),B:17422.3(38.57%),P:1e-34
|name=4-CGGAGAGATA,CNhs10649,BestGuess:GATA4_f1_HM09(0.689128766006666),T:1582.0(49.30%),B:17422.3(38.57%),P:1e-34
|tomtom_result=YPR196W#MA0437.1;0;0.000441138;0.209982;0.401162;9;CGGAGAGATA;CGGAGAAAT;-!HAP1#MA0312.1;0;0.00120429;0.57324;0.401162;8;CGGAGAGATA;CGGAGATA;+!Tal1::Gata1#MA0140.1;6;0.00129521;0.616521;0.401162;10;CGGAGAGATA;CTGGTGGGGACAGATAAG;+!OAF1#MA0348.1;1;0.00236581;1.12613;0.401162;8;CGGAGAGATA;TCGGAGATA;+!YDR520C#MA0422.1;1;0.0024352;1.15916;0.401162;9;CGGAGAGATA;CCGGAGATAA;+!Trl#MA0205.1;0;0.00253164;1.20506;0.401162;10;CGGAGAGATA;GAGAGAGCAA;-!RGT1#MA0367.1;1;0.00736212;3.50437;0.756589;10;CGGAGAGATA;CCGGAAAAACT;-!PDR8#MA0354.1;1;0.0076976;3.66406;0.756589;7;CGGAGAGATA;GCGGAGAT;+!YNR063W#MA0432.1;1;0.00800233;3.80911;0.756589;7;CGGAGAGATA;TCGGAGAT;+!EDS1#MA0294.1;0;0.00830308;3.95227;0.756589;9;CGGAGAGATA;CGGAAAAAT;+!YRR1#MA0439.1;1;0.00875356;4.16669;0.756589;10;CGGAGAGATA;GCGGAGATAAG;-!CHA4#MA0283.1;2;0.010079;4.7976;0.798554;6;CGGAGAGATA;GGCGGAGA;+!HAL9#MA0311.1;0;0.0116028;5.52295;0.848573;5;CGGAGAGATA;CGGAA;+!z#MA0255.1;0;0.0136136;6.48007;0.924512;10;CGGAGAGATA;TTGAGTGATT;+!STB5#MA0392.1;0;0.0189132;9.00269;0.998691;8;CGGAGAGATA;CGGTGTTA;+
}}
}}

Latest revision as of 13:25, 7 September 2012

Full Name: 4-CGGAGAGATA,CNhs10649,BestGuess:GATA4_f1_HM09(0.689128766006666),T:1582.0(49.30%),B:17422.3(38.57%),P:1e-34

Motif matrix
POACGT
1178.7661112.146161.364129.724
2200.914161.3641066.268153.454
3136.052174.021132.712139.216
41124.802162.946139.216155.036
5128.142156.6181158.024139.216
61112.146156.618148.708164.528
7151.872172.4381096.326161.364
81112.146183.512102.83183.512
9153.454170.856199.3321058.358
101101.072158.2139.216183.512

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
YPR196W#MA0437.100.0004411380.2099820.4011629CGGAGAGATACGGAGAAAT-
HAP1#MA0312.100.001204290.573240.4011628CGGAGAGATACGGAGATA+
Tal1::Gata1#MA0140.160.001295210.6165210.40116210CGGAGAGATACTGGTGGGGACAGATAAG+
OAF1#MA0348.110.002365811.126130.4011628CGGAGAGATATCGGAGATA+
YDR520C#MA0422.110.00243521.159160.4011629CGGAGAGATACCGGAGATAA+
Trl#MA0205.100.002531641.205060.40116210CGGAGAGATAGAGAGAGCAA-
RGT1#MA0367.110.007362123.504370.75658910CGGAGAGATACCGGAAAAACT-
PDR8#MA0354.110.00769763.664060.7565897CGGAGAGATAGCGGAGAT+
YNR063W#MA0432.110.008002333.809110.7565897CGGAGAGATATCGGAGAT+
EDS1#MA0294.100.008303083.952270.7565899CGGAGAGATACGGAAAAAT+
YRR1#MA0439.110.008753564.166690.75658910CGGAGAGATAGCGGAGATAAG-
CHA4#MA0283.120.0100794.79760.7985546CGGAGAGATAGGCGGAGA+
HAL9#MA0311.100.01160285.522950.8485735CGGAGAGATACGGAA+
z#MA0255.100.01361366.480070.92451210CGGAGAGATATTGAGTGATT+
STB5#MA0392.100.01891329.002690.9986918CGGAGAGATACGGTGTTA+
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