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MacroAPE 1083:4-SGSTTAWA: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!1;1.802;937.04;861.356;1.802!2;46.852;385.628;1099.22;270.3!3;1.802;619.888;735.216;445.094!4;396.44;1.802;336.974;1066.784!5;1.802;1.802;1.80...")
 
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107G3;0.0976486!10429-106D6;0.0758784!10464-106H5;0.241162!10827-111C8;0.531214!10789-110H6;0.0688458!10828-111C9;0.149409!10788-110H5;0.135675!10792-110H9;0.0896435!10765-110E9;0.114837!10829-111D1;0.163661!10830-111D2;0.0178055!10831-111D3;0.00725375!10832-111D4;0.268836!10833-111D5;0.0701784!10764-110E8;0.105232!10770-110F5;0.172598!10399-106A3;0.124241!10400-106A4;0.112859!10405-106A9;0.0738092!10834-111D6;0.0895326!10835-111D7;0.014791!10836-111D8;0.133209!10837-111D9;0.127515!10699-109G6;0.0513879!10802-111A1;0.0725299!10796-110I4;0.602884!10010-101C1;0.466107!10810-111A9;0.0835716!10421-106C7;6.86929e-05!10708-109H6;0.374555!12235-129G3;0.522194!12236-129G4;0.195049!12237-129G5;0.0711933!10167-103B5;0.746436!10151-102I7;0.916519!10428-106D5;0.76747!10795-110I3;0.68496!10805-111A4;0.487438!10052-101G7;0.335678!10189-103D9;0.0266002!10589-108D4;0.17743!10425-106D2;0.244529!10427-106D4;0.245974!10702-109G9;0.280346!10432-106D9;0.244522!10496-107C1;0.821682!10718-109I7;0.108666!10011-101C2;0.104955!10053-101G8;0.0906293!10686-109F2;0.296575!10084-102B3;0.736137!10012-101C3;0.256062!10085-102B4;0.853347!10482-107A5;0.742804!10419-106C5;0.308432!10080-102A8;0.618868!10760-110E4;0.0486512!10709-109H7;0.156151!10710-109H8;0.5015!10703-109H1;0.665487!10719-109I8;0.626395!10642-109A3;0.597089!10177-103C6;0.966139!10164-103B2;0.699241!10173-103C2;0.442667!10166-103B4;0.490226!10083-102B2;0.711206!10188-103D8;0.8192!10552-107I3;0.20463!10553-107I4;0.0477778!10013-101C4;0.654391!10536-107G5;0.163293!10618-108G6;0.453779!10423-106C9;0.203922!10785-110H2;0.237072!12238-129G6;0.184858!12239-129G7;0.00866418!12240-129G8;0.50287!10416-106C2;0.0395755!10801-110I9;0.079264!10766-110F1;0.253195!10824-111C5;0.148572!10825-111C6;0.526764!10826-111C7;0.655843!10454-106G4;0.719705!10409-106B4;0.285685!10638-108I8;0.322699!10636-108I6;0.0361148!10513-107D9;0.318998!10420-106C6;0.639468!10082-102B1;0.0839084!10014-101C5;0.371277!10070-101I7;0.606563!10452-106G2;0.440359!10453-106G3;0.59046!10449-106F8;0.835163!10042-101F6;0.931288!10069-101I6;0.271515!10193-103E4;0.0303026!10631-108I1;0.733734!10438-106E6;0.0896348!10488-107B2;0.754719!10196-103E7;0.544164!10071-101I8;0.372207!10071-101I8;0.482633!10041-101F5;0.818341!10451-106G1;0.05839!10450-106F9;0.974355!10604-108F1;0.824588!10605-108F2;0.267394!10606-108F3;0.072718!10603-108E9;0.524067!10497-107C2;0.0309164!10448-106F7;0.146952!10643-109A4;0.138163!10426-106D3;0.0198802!10431-106D8;0.606249!10197-103E8;0.919323!10443-106F2;0.0571205!10815-111B5;0.214311!10816-111B6;0.55472!10817-111B7;0.564444!10015-101C6;0.590548!10410-106B5;0.0434592!10054-101G9;0.105648!10758-110E2;0.09212!10711-109H9;0.137837!10040-101F4;0.185428!10470-106I2;0.880592!10415-106C1;0.644269!10198-103E9;0.356755!10614-108G2;0.104988!10612-108F9;0.00538382!10549-107H9;0.373796!10615-108G3;0.0645029!10487-107B1;0.573635!10433-106E1;0.246111!10688-109F4;0.0167431!10444-106F3;0.904877!10444-106F3;0.021802!10485-107A8;0.0199381!10413-106B8;0.280457!10175-103C4;0.413866!10161-103A8;0.714061!12131-128D7;0.826466!10624-108H3;0.117233!10712-109I1;0.693874!10205-103F7;0.722086!10206-103F8;0.0299294!10207-103F9;0.0661884!10050-101G5;0.0180583!10051-101G6;0.028903!10016-101C7;0.116659!10046-101G1;0.0709066!10778-110G4;0.141887!10633-108I3;0.1361!10818-111B8;0.372025!10819-111B9;0.236264!10820-111C1;0.20806!10484-107A7;0.194709!10808-111A7;0.902849!10169-103B7;0.0354401!10153-102I9;0.929792!13425-144D5;0.94928!13433-144E4;0.113712!13437-144E8;0.100169!11904-125F5;0.0313336!11905-125F6;0.711244!10039-101F3;0.447875!10791-110H8;0.942927!10017-101C8;0.0306702!10045-101F9;0.818924!10509-107D5;0.392715!10839-111E2;0.199912!10692-109F8;0.237115!10079-102A7;0.11256!10078-102A6;0.0897676!10721-110A1;0.0829248!10569-108B2;0.686055!10570-108B3;0.724196!10571-108B4;0.84891!10647-109A8;0.428218!10752-110D5;0.614029!10782-110G8;0.797362!10726-110A6;0.613441!10018-101C9;0.362625!10086-102B5;0.439552!10182-103D2;0.113396!10165-103B3;0.657433!10499-107C4;0.834837!10408-106B3;0.921027!10019-101D1;0.655542!10068-101I5;0.506064!10075-102A3;0.739068!10077-102A5;0.57802!10727-110A7;0.329109!10775-110G1;0.531949!10412-106B7;0.0915911!12231-129F8;0.328319!12232-129F9;0.0440432!12233-129G1;0.0777368!12234-129G2;0.0946656!10414-106B9;0.114729!10170-103B8;0.0831226!10183-103D3;0.501574!10150-102I6;0.446917!10174-103C3;0.519201!10155-103A2;0.331744!10038-101F2;0.46535!10838-111E1;0.213485!10759-110E3;0.819205!10514-107E1;0.840774!10465-106H6;0.701457!10691-109F7;0.999689!10843-111E6;0.0756995!10844-111E7;0.528226!11747-123G1;0.909373!11748-123G2;0.549355!11749-123G3;0.489186!11750-123G4;0.759074!11751-123G5;0.278259!11840-124H4;0.306258!11752-123G6;0.120831!11753-123G7;0.686048!11754-123G8;0.429135!11755-123G9;0.469565!11756-123H1;0.602629!11833-124G6;0.499269!11760-123H5;0.348792!11836-124G9;0.439874!11758-123H3;0.984178!11835-124G8;0.831688!11762-123H7;0.318099!11838-124H2;0.58765!11757-123H2;0.505635!11759-123H4;0.933612!11761-123H6;0.448304!11842-124H6;0.45048!11837-124H1;0.465616!10568-108B1;0.331718!13230-141I8;0.128795!13231-141I9;0.663308!10696-109G3;0.451691!10493-107B7;0.413884!10494-107B8;0.295703!10850-111F4;0.192936!10851-111F5;0.360011!10852-111F6;0.748643!10853-111F7;0.565205!10854-111F8;0.477854!10855-111F9;0.323481!10856-111G1;0.174199!10847-111F1;0.567023!10846-111E9;0.949428!10848-111F2;0.262754!10845-111E8;0.167539!10857-111G2;0.15421!10858-111G3;0.389708!10156-103A3;0.856416!11901-125F2;0.568271!11902-125F3;0.344943!11903-125F4;0.443667!10689-109F5;0.401305!10648-109A9;0.922459!10784-110H1;0.0821146!10744-110C6;0.819102!10772-110F7;0.806805!10474-106I6;0.101611!10600-108E6;0.0477747!10684-109E9;0.905795!12226-129F3;0.435657!12227-129F4;0.584658!10508-107D4;0.843803!10539-107G8;0.391392!10607-108F4;0.604158!10555-107I6;0.297178!10774-110F9;0.249726!10637-108I7;0.403469!10663-109C6;0.291065!10728-110A8;0.771036!10729-110A9;0.937724!10430-106D7;0.160078!10730-110B1;0.769859!10813-111B3;0.514523!10812-111B2;0.232341!10037-101F1;0.94639!10172-103C1;0.974868!10163-103B1;0.705543!10076-102A4;0.823496!10073-102A1;0.650619!10036-101E9;0.595138!10195-103E6;0.476276!10277-104E7;0.801866!10434-106E2;0.152531!10550-107I1;0.0232928!10545-107H5;0.28411!10544-107H4;0.135547!10704-109H2;0.0929973!10510-107D6;0.325932!10558-107I9;0.262722!10020-101D2;0.875616!10732-110B3;0.0506724!10049-101G4;0.00987399!10698-109G5;0.674992!10437-106E5;0.183046!10417-106C3;0.819301!10035-101E8;0.827579!10171-103B9;0.863911!10157-103A4;0.802914!10034-101E7;0.649649!10072-101I9;0.826663!10199-103F1;0.380682!10200-103F2;0.207219!10697-109G4;0.0283873!10723-110A3;0.603601!10179-103C8;0.304307!10160-103A7;0.753638!10180-103C9;0.718304!10162-103A9;0.415297!10021-101D3;0.123169!10840-111E3;0.18856!10706-109H4;0.30466!10033-101E6;0.991629!10032-101E5;0.802296!10490-107B4;0.657228!10439-106E7;0.946546!10022-101D4;0.246037!10176-103C5;0.143776!10469-106I1;0.39813!10067-101I4;0.980606!10411-106B6;0.485699!10471-106I3;0.665849!10030-101E3;0.18336!10475-106I7;0.0443678!10787-110H4;0.96125!10477-106I9;0.80611!10695-109G2;0.726668!11771-123I7;0.173229!11772-123I8;0.179882!11773-123I9;0.745787!10093-102C3;0.649133!10442-106F1;0.576412!10442-106F1;0.0581936!10201-103F3;0.0674144!10639-108I9;0.151605!11843-124H7;0.00052843!11841-124H5;0.569704!10693-109F9;0.275317!10436-106E4;0.390458!10483-107A6;0.321524!10282-104F3;0.907954!10023-101D5;0.0456372!10066-101I3;0.0113457!10065-101I2;0.0403207!10800-110I8;0.0387453!10610-108F7;0.96881!10841-111E4;0.602478!10541-107H1;0.0765099!10842-111E5;0.0182491!10562-108A4;0.881891!10024-101D6;0.145763!10064-101I1;0.690649!10609-108F6;0.654736!10048-101G3;0.0161366!10781-110G7;0.167772!10181-103D1;0.146559!10159-103A6;0.580184!10056-101H2;0.953591!10737-110B8;0.109905!10025-101D7;0.0884927!10044-101F8;0.986006!10424-106D1;0.42239!10463-106H4;0.0448364!10616-108G4;0.257538!10486-107A9;0.474879!10062-101H8;0.103882!10202-103F4;0.117018!10158-103A5;0.0837912!10441-106E9;0.854402!10031-101E4;0.993903!10063-101H9;0.539068!10063-101H9;0.682634!11763-123H8;0.792777!11765-123I1;0.444699!11768-123I4;0.238242!10807-111A6;0.373321!10790-110H7;0.757136!10798-110I6;0.118552!10786-110H3;0.135977!10591-108D6;0.96251!10593-108D8;0.27195!10590-108D5;0.518845!10026-101D8;0.903125!10096-102C6;0.238399!10168-103B6;0.597632!10154-103A1;0.740601!10209-103G2;0.881991!10061-101H7;0.0325943!10027-101D9;0.131987!10043-101F7;0.514894!10783-110G9;0.362922!10028-101E1;0.510662!10060-101H6;0.112681!10203-103F5;0.0333464!10059-101H5;0.00542019!10047-101G2;0.0153107!10029-101E2;0.0302135!10058-101H4;0.0119438!10418-106C4;0.056518!10492-107B6;0.401795!10694-109G1;0.773974!10797-110I5;0.185433!10057-101H3;0.835259!10100-102D1;0.0159491!10055-101H1;0.519794!10204-103F6;0.313848!10191-103E2;0.230428!10563-108A5;0.00891517
|name=4-SGSTTAWA,CNhs12494,BestGuess:TBP_f1_HM09(0.686915185618861),T:1802.0(44.43%),B:16035.2(35.80%),P:1e-29
|name=4-SGSTTAWA,CNhs12494,BestGuess:TBP_f1_HM09(0.686915185618861),T:1802.0(44.43%),B:16035.2(35.80%),P:1e-29
|tomtom_result=TBP#MA0108.2;4;0.000576273;0.274306;0.274306;8;CGGTTAAA;CCCCGCCTTTTATAC;-!TBP#MA0108.2;4;0.000576273;0.274306;0.274306;8;CGGTTAAA;CCCCGCCTTTTATAC;-!YDR026C#MA0421.1;2;0.0190734;9.07896;1;8;CGGTTAAA;GCCGGGTAAA;-!myb.Ph3#MA0054.1;3;0.0208001;9.90084;1;6;CGGTTAAA;AAACGGTTA;-!SMP1#MA0383.1;2;0.0209926;9.99247;1;8;CGGTTAAA;TGCTAATTTAATTATAGGTAA;-
}}
}}

Latest revision as of 13:34, 7 September 2012

Full Name: 4-SGSTTAWA,CNhs12494,BestGuess:TBP_f1_HM09(0.686915185618861),T:1802.0(44.43%),B:16035.2(35.80%),P:1e-29

Motif matrix
POACGT
11.802937.04861.3561.802
246.852385.6281099.22270.3
31.802619.888735.216445.094
4396.441.802336.9741066.784
51.8021.8021.8021796.594
61205.5381.80254.06540.6
7801.89151.36884.694764.048
81796.5941.8021.8021.802

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
TBP#MA0108.240.0005762730.2743060.2743068CGGTTAAACCCCGCCTTTTATAC-
TBP#MA0108.240.0005762730.2743060.2743068CGGTTAAACCCCGCCTTTTATAC-
YDR026C#MA0421.120.01907349.0789618CGGTTAAAGCCGGGTAAA-
myb.Ph3#MA0054.130.02080019.9008416CGGTTAAAAAACGGTTA-
SMP1#MA0383.120.02099269.9924718CGGTTAAATGCTAATTTAATTATAGGTAA-
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