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MacroAPE 1083:11-CGTCTGCGTA: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!1;154.154;1088.516;136.851;193.479!2;166.738;166.738;1042.899;196.625!3;206.063;173.03;176.176;1017.731!4;149.435;1094.808;154.154;174.603!5;1...")
 
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10828-111C9;0.482625!10788-110H5;0.327235!10792-110H9;0.089522!10765-110E9;0.275542!10829-111D1;0.24559!10830-111D2;0.0513083!10831-111D3;0.42925!10832-111D4;0.224811!10833-111D5;0.062025!10764-110E8;0.0845273!10770-110F5;0.22976!10399-106A3;0.179209!10400-106A4;0.11717!10405-106A9;0.0962407!10834-111D6;0.088508!10835-111D7;0.0464743!10836-111D8;0.126101!10837-111D9;0.135571!10699-109G6;0.223004!10802-111A1;0.0989529!10796-110I4;0.149998!10010-101C1;0.413884!10810-111A9;0.0780404!10421-106C7;0.073578!10708-109H6;0.172539!12235-129G3;0.0707252!12236-129G4;0.5213!12237-129G5;0.981013!10167-103B5;0.586479!10151-102I7;0.872945!10428-106D5;0.819326!10795-110I3;0.971154!10805-111A4;0.0427425!10052-101G7;0.173981!10189-103D9;0.029534!10589-108D4;0.00284532!10425-106D2;0.0657881!10427-106D4;0.974601!10702-109G9;0.12098!10432-106D9;0.387961!10496-107C1;0.140977!10718-109I7;0.81635!10011-101C2;0.316234!10053-101G8;0.02619!10686-109F2;0.179847!10084-102B3;0.583517!10012-101C3;0.708915!10085-102B4;0.824566!10482-107A5;0.885708!10419-106C5;0.657744!10080-102A8;0.379055!10760-110E4;0.0181188!10709-109H7;0.445227!10710-109H8;0.26581!10703-109H1;0.490474!10719-109I8;0.0456395!10642-109A3;0.00486706!10177-103C6;0.416489!10164-103B2;0.806716!10173-103C2;0.998169!10166-103B4;0.524074!10083-102B2;0.80346!10188-103D8;0.894681!10552-107I3;0.682!10553-107I4;0.124765!10013-101C4;0.91618!10536-107G5;0.0610429!10618-108G6;0.431808!10423-106C9;0.30993!10785-110H2;0.298412!12238-129G6;0.302934!12239-129G7;0.0177047!12240-129G8;0.0904418!10416-106C2;0.162804!10801-110I9;0.489392!10766-110F1;0.261657!10824-111C5;0.695863!10825-111C6;0.0535215!10826-111C7;0.0505354!10454-106G4;0.068446!10409-106B4;0.159848!10638-108I8;0.302572!10636-108I6;0.205423!10513-107D9;0.53548!10420-106C6;0.655497!10082-102B1;0.084466!10014-101C5;0.0116467!10070-101I7;0.00873592!10452-106G2;0.0107171!10453-106G3;0.328826!10449-106F8;0.263421!10042-101F6;0.243088!10069-101I6;0.497842!10193-103E4;0.100644!10631-108I1;0.865029!10438-106E6;0.0802775!10488-107B2;0.268596!10196-103E7;0.073604!10071-101I8;0.0537222!10071-101I8;0.0139298!10041-101F5;0.783386!10451-106G1;0.186276!10450-106F9;0.434474!10604-108F1;0.163621!10605-108F2;0.13876!10606-108F3;0.0181228!10603-108E9;0.0524368!10497-107C2;0.0351751!10448-106F7;0.662623!10643-109A4;0.0510431!10426-106D3;0.266522!10431-106D8;0.300239!10197-103E8;0.28403!10443-106F2;0.0241765!10815-111B5;0.462061!10816-111B6;0.381714!10817-111B7;0.333504!10015-101C6;0.343606!10410-106B5;0.0341502!10054-101G9;0.471033!10758-110E2;0.186821!10711-109H9;0.279963!10040-101F4;0.399758!10470-106I2;0.978235!10415-106C1;0.65818!10198-103E9;0.0920352!10614-108G2;0.0123354!10612-108F9;0.33707!10549-107H9;0.6321!10615-108G3;0.104153!10487-107B1;0.16341!10433-106E1;0.0027277!10688-109F4;0.221887!10444-106F3;0.763315!10444-106F3;0.301266!10485-107A8;0.178404!10413-106B8;0.726685!10175-103C4;0.0391507!10161-103A8;0.729668!12131-128D7;0.648895!10624-108H3;0.251257!10712-109I1;0.55074!10205-103F7;0.141252!10206-103F8;0.095252!10207-103F9;0.104371!10050-101G5;0.167294!10051-101G6;0.0464609!10016-101C7;0.0932616!10046-101G1;0.0636142!10778-110G4;0.164903!10633-108I3;0.130082!10818-111B8;0.350315!10819-111B9;0.313157!10820-111C1;0.32471!10484-107A7;0.33604!10808-111A7;0.621098!10169-103B7;0.0802114!10153-102I9;0.990957!13425-144D5;0.694472!13433-144E4;0.239476!13437-144E8;0.284436!11904-125F5;0.104983!11905-125F6;0.954321!10039-101F3;0.456073!10791-110H8;0.990065!10017-101C8;0.887275!10045-101F9;0.0635002!10509-107D5;0.130369!10839-111E2;0.0268371!10692-109F8;0.27625!10079-102A7;0.94948!10078-102A6;0.102885!10721-110A1;0.0410455!10569-108B2;0.0671075!10570-108B3;0.378156!10571-108B4;0.493025!10647-109A8;0.366297!10752-110D5;0.0802633!10782-110G8;0.155872!10726-110A6;0.960023!10018-101C9;0.879878!10086-102B5;0.152519!10182-103D2;0.0656231!10165-103B3;0.627906!10499-107C4;0.74325!10408-106B3;0.00615836!10019-101D1;0.000895806!10068-101I5;0.0089431!10075-102A3;0.10783!10077-102A5;0.00137405!10727-110A7;0.000616145!10775-110G1;0.0423197!10412-106B7;0.194372!12231-129F8;0.775128!12232-129F9;0.185497!12233-129G1;0.127827!12234-129G2;0.0877702!10414-106B9;0.0978593!10170-103B8;0.284939!10183-103D3;0.813521!10150-102I6;0.921574!10174-103C3;0.853331!10155-103A2;0.611475!10038-101F2;0.58378!10838-111E1;0.526408!10759-110E3;0.323858!10514-107E1;0.0307373!10465-106H6;0.491254!10691-109F7;0.413062!10843-111E6;0.810891!10844-111E7;0.135673!11747-123G1;0.327869!11748-123G2;0.839557!11749-123G3;0.649386!11750-123G4;0.955416!11751-123G5;0.430652!11840-124H4;0.425312!11752-123G6;0.451299!11753-123G7;0.323335!11754-123G8;0.490474!11755-123G9;0.932395!11756-123H1;0.777104!11833-124G6;0.468211!11760-123H5;0.880312!11836-124G9;0.768771!11758-123H3;0.838272!11835-124G8;0.600566!11762-123H7;0.277052!11838-124H2;0.691405!11757-123H2;0.482614!11759-123H4;0.563162!11761-123H6;0.8274!11842-124H6;0.963621!11837-124H1;0.881667!10568-108B1;0.297914!13230-141I8;0.817631!13231-141I9;0.257996!10696-109G3;0.341084!10493-107B7;0.937132!10494-107B8;0.183425!10850-111F4;0.792214!10851-111F5;0.37742!10852-111F6;0.748849!10853-111F7;0.931873!10854-111F8;0.332823!10855-111F9;0.0106401!10856-111G1;0.471831!10847-111F1;0.935532!10846-111E9;0.666778!10848-111F2;0.449083!10845-111E8;0.0394932!10857-111G2;0.110287!10858-111G3;0.498826!10156-103A3;0.745881!11901-125F2;0.905695!11902-125F3;0.289887!11903-125F4;0.287305!10689-109F5;0.204339!10648-109A9;0.989471!10784-110H1;0.779035!10744-110C6;0.348503!10772-110F7;0.922008!10474-106I6;0.156851!10600-108E6;0.662591!10684-109E9;0.928363!12226-129F3;0.785242!12227-129F4;0.336876!10508-107D4;0.263234!10539-107G8;0.035949!10607-108F4;0.024387!10555-107I6;0.143316!10774-110F9;0.0730052!10637-108I7;0.149329!10663-109C6;0.244977!10728-110A8;0.662276!10729-110A9;0.410022!10430-106D7;0.110167!10730-110B1;0.422894!10813-111B3;0.00848747!10812-111B2;0.225248!10037-101F1;0.014388!10172-103C1;0.974967!10163-103B1;0.79203!10076-102A4;0.795331!10073-102A1;0.856388!10036-101E9;0.968472!10195-103E6;0.958977!10277-104E7;0.914712!10434-106E2;0.262239!10550-107I1;0.202548!10545-107H5;0.188991!10544-107H4;0.614522!10704-109H2;0.598964!10510-107D6;0.896157!10558-107I9;0.7604!10020-101D2;0.840222!10732-110B3;0.0847536!10049-101G4;0.722061!10698-109G5;0.124596!10437-106E5;0.548194!10417-106C3;0.0701756!10035-101E8;0.470003!10171-103B9;0.941344!10157-103A4;0.902475!10034-101E7;0.9473!10072-101I9;0.986664!10199-103F1;0.964876!10200-103F2;0.0338907!10697-109G4;0.0336027!10723-110A3;0.23094!10179-103C8;0.242826!10160-103A7;0.89406!10180-103C9;0.878405!10162-103A9;0.566239!10021-101D3;0.567125!10840-111E3;0.105972!10706-109H4;0.140327!10033-101E6;0.448517!10032-101E5;0.960307!10490-107B4;0.955225!10439-106E7;0.0941508!10022-101D4;0.0737924!10176-103C5;0.0592655!10469-106I1;0.955171!10067-101I4;0.74695!10411-106B6;0.0634419!10471-106I3;0.270748!10030-101E3;0.0344784!10475-106I7;0.156605!10787-110H4;0.0227665!10477-106I9;0.276808!10695-109G2;0.63511!11771-123I7;0.0817584!11772-123I8;0.596469!11773-123I9;0.668509!10093-102C3;0.465069!10442-106F1;0.231332!10442-106F1;0.67472!10201-103F3;0.594806!10639-108I9;0.0507925!11843-124H7;0.134985!11841-124H5;0.00351624!10693-109F9;0.00821781!10436-106E4;0.335177!10483-107A6;0.218062!10282-104F3;0.428493!10023-101D5;0.18341!10066-101I3;0.169823!10065-101I2;0.0972552!10800-110I8;0.0461378!10610-108F7;0.339579!10841-111E4;0.291617!10541-107H1;0.162434!10842-111E5;0.500349!10562-108A4;0.00254312!10024-101D6;0.238301!10064-101I1;0.00462565!10609-108F6;0.00576346!10048-101G3;0.139085!10781-110G7;0.0412905!10181-103D1;0.275916!10159-103A6;0.307294!10056-101H2;0.657325!10737-110B8;0.23859!10025-101D7;0.228328!10044-101F8;0.0227132!10424-106D1;0.0299729!10463-106H4;0.0360402!10616-108G4;0.560204!10486-107A9;0.141247!10062-101H8;0.0239556!10202-103F4;0.00179115!10158-103A5;0.0273306!10441-106E9;0.407824!10031-101E4;0.390578!10063-101H9;0.918145!10063-101H9;0.819856!11763-123H8;0.0740401!11765-123I1;0.399261!11768-123I4;0.303997!10807-111A6;0.439277!10790-110H7;0.166327!10798-110I6;0.0629806!10786-110H3;0.642966!10591-108D6;0.32761!10593-108D8;0.0192656!10590-108D5;0.00614396!10026-101D8;0.0255421!10096-102C6;0.293297!10168-103B6;0.0398706!10154-103A1;0.717336!10209-103G2;0.729132!10061-101H7;0.0484515!10027-101D9;0.018112!10043-101F7;0.910022!10783-110G9;0.13606!10028-101E1;0.587793!10060-101H6;0.149026!10203-103F5;0.0880759!10059-101H5;0.0513395!10047-101G2;0.0472664!10029-101E2;0.00771785!10058-101H4;0.0681494!10418-106C4;0.0244389!10492-107B6;0.29406!10694-109G1;0.435387!10797-110I5;0.167713!10057-101H3;0.363571!10100-102D1;0.0636418!10055-101H1;0.147972!10204-103F6;0.036735!10191-103E2;0.0865088!10563-108A5;0.00623137
|name=11-CGTCTGCGTA,CNhs11998,BestGuess:MAFB.p2.SwissRegulon.nucfreq(0.625154891780755),T:1573.0(41.98%),B:13603.9(31.40%),P:1e-41
|name=11-CGTCTGCGTA,CNhs11998,BestGuess:MAFB.p2.SwissRegulon.nucfreq(0.625154891780755),T:1573.0(41.98%),B:13603.9(31.40%),P:1e-41
|tomtom_result=YAP6#MA0418.1;0;0.00427763;2.03615;1;10;CGTCTGCGTA;GGTCTGATTACGTAAGCGAC;+!FHL1#MA0295.1;-2;0.00778551;3.7059;1;8;CGTCTGCGTA;TTTGCGTC;-!vvl#MA0254.1;-4;0.0154505;7.35442;1;6;CGTCTGCGTA;TGCATA;-!Mafb#MA0117.1;1;0.016058;7.64363;1;7;CGTCTGCGTA;GCGTCAGC;-!FOXC1#MA0032.1;-2;0.0166669;7.93343;1;8;CGTCTGCGTA;GGTAAGTA;+
}}
}}

Latest revision as of 13:44, 7 September 2012

Full Name: 11-CGTCTGCGTA,CNhs11998,BestGuess:MAFB.p2.SwissRegulon.nucfreq(0.625154891780755),T:1573.0(41.98%),B:13603.9(31.40%),P:1e-41

Motif matrix
POACGT
1154.1541088.516136.851193.479
2166.738166.7381042.899196.625
3206.063173.03176.1761017.731
4149.4351094.808154.154174.603
5144.716151.008130.5591146.717
6163.592162.0191090.089157.3
7152.5811116.83136.851166.738
8127.413127.4131173.458144.716
9162.019143.143151.0081116.83
101123.122169.88499.099180.895

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
YAP6#MA0418.100.004277632.03615110CGTCTGCGTAGGTCTGATTACGTAAGCGAC+
FHL1#MA0295.1-20.007785513.705918CGTCTGCGTATTTGCGTC-
vvl#MA0254.1-40.01545057.3544216CGTCTGCGTATGCATA-
Mafb#MA0117.110.0160587.6436317CGTCTGCGTAGCGTCAGC-
FOXC1#MA0032.1-20.01666697.9334318CGTCTGCGTAGGTAAGTA+
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