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MacroAPE 1083:GATTGGTGCAG,motif851: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!1;75.153;52.767;363.506;41.574!2;371.501;43.173;63.427;54.899!3;44.239;55.965;67.158;365.638!4;54.899;0.533;83.148;394.42!5;67.158;14.391;367....")
 
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669!10717-109I6;0.737255!10455-106G5;0.232718!10534-107G3;0.125404!10429-106D6;0.241507!10464-106H5;0.581874!10827-111C8;0.141038!10789-110H6;0.117712!10828-111C9;0.0727055!10788-110H5;0.395444!10792-110H9;0.193281!10765-110E9;0.437243!10829-111D1;0.26453!10830-111D2;0.133273!10831-111D3;0.209949!10832-111D4;0.266897!10833-111D5;0.236934!10764-110E8;0.140155!10770-110F5;0.0119719!10399-106A3;0.101877!10400-106A4;0.0225601!10405-106A9;0.0140927!10834-111D6;0.0180644!10835-111D7;0.0328093!10836-111D8;0.109608!10837-111D9;0.327453!10699-109G6;0.0221072!10802-111A1;0.284784!10796-110I4;0.100103!10010-101C1;0.0318014!10810-111A9;0.252379!10421-106C7;0.754856!10708-109H6;0.424808!12235-129G3;0.00721344!12236-129G4;0.146487!12237-129G5;0.996805!10167-103B5;0.437829!10151-102I7;9.71229e-06!10428-106D5;1.69255e-05!10795-110I3;0.145574!10805-111A4;0.0458247!10052-101G7;0.366429!10189-103D9;0.109227!10589-108D4;0.81058!10425-106D2;0.975825!10427-106D4;0.910543!10702-109G9;0.121218!10432-106D9;0.219324!10496-107C1;0.0804068!10718-109I7;0.161443!10011-101C2;0.187441!10053-101G8;0.136119!10686-109F2;0.0952726!10084-102B3;0.918689!10012-101C3;6.71927e-05!10085-102B4;7.10842e-06!10482-107A5;0.000465092!10419-106C5;0.658775!10080-102A8;0.159566!10760-110E4;0.795125!10709-109H7;0.188233!10710-109H8;0.0741996!10703-109H1;0.865636!10719-109I8;0.16753!10642-109A3;0.165582!10177-103C6;0.422287!10164-103B2;6.45356e-06!10173-103C2;2.72952e-06!10166-103B4;3.59593e-05!10083-102B2;0.00013914!10188-103D8;0.000147813!10552-107I3;3.8438e-05!10553-107I4;0.0872358!10013-101C4;0.192065!10536-107G5;0.0857678!10618-108G6;0.34969!10423-106C9;0.0550057!10785-110H2;0.06918!12238-129G6;0.0134587!12239-129G7;0.0666209!12240-129G8;0.760999!10416-106C2;0.202347!10801-110I9;0.0866191!10766-110F1;0.0614344!10824-111C5;0.030567!10825-111C6;0.168051!10826-111C7;0.206224!10454-106G4;0.179054!10409-106B4;0.184231!10638-108I8;0.112431!10636-108I6;0.00738921!10513-107D9;0.0260657!10420-106C6;0.139301!10082-102B1;0.780817!10014-101C5;0.85555!10070-101I7;0.750963!10452-106G2;0.488208!10453-106G3;0.143771!10449-106F8;0.159325!10042-101F6;0.17756!10069-101I6;3.0599e-05!10193-103E4;0.121853!10631-108I1;6.54447e-06!10438-106E6;0.226044!10488-107B2;0.847821!10196-103E7;0.141595!10071-101I8;0.347458!10071-101I8;0.573574!10041-101F5;0.000584676!10451-106G1;0.0998249!10450-106F9;0.423561!10604-108F1;0.592717!10605-108F2;0.155988!10606-108F3;0.0169536!10603-108E9;0.113065!10497-107C2;0.082676!10448-106F7;0.0714813!10643-109A4;0.0965698!10426-106D3;0.171577!10431-106D8;0.144637!10197-103E8;0.0730262!10443-106F2;0.176933!10815-111B5;0.0490732!10816-111B6;0.0365957!10817-111B7;0.0599456!10015-101C6;0.0397029!10410-106B5;0.247197!10054-101G9;0.975086!10758-110E2;0.010042!10711-109H9;0.095143!10040-101F4;0.235658!10470-106I2;3.28576e-06!10415-106C1;0.0611765!10198-103E9;0.0398548!10614-108G2;0.296434!10612-108F9;0.334728!10549-107H9;0.273263!10615-108G3;0.511903!10487-107B1;0.935781!10433-106E1;0.0628662!10688-109F4;0.18419!10444-106F3;0.315069!10444-106F3;0.774388!10485-107A8;0.986133!10413-106B8;0.81782!10175-103C4;0.819816!10161-103A8;3.30083e-05!12131-128D7;3.39732e-05!10624-108H3;0.174467!10712-109I1;0.479267!10205-103F7;0.341312!10206-103F8;0.0719656!10207-103F9;0.0219716!10050-101G5;0.439191!10051-101G6;0.384655!10016-101C7;0.290565!10046-101G1;0.374823!10778-110G4;0.0372779!10633-108I3;0.115175!10818-111B8;0.0807376!10819-111B9;0.333515!10820-111C1;0.273932!10484-107A7;0.339859!10808-111A7;0.212089!10169-103B7;0.257936!10153-102I9;9.9632e-06!13425-144D5;2.83324e-05!13433-144E4;0.572378!13437-144E8;0.58328!11904-125F5;0.566775!11905-125F6;0.0292504!10039-101F3;0.0643451!10791-110H8;2.01665e-06!10017-101C8;0.258164!10045-101F9;0.558444!10509-107D5;0.951113!10839-111E2;0.170062!10692-109F8;0.278555!10079-102A7;0.173001!10078-102A6;0.113946!10721-110A1;0.360966!10569-108B2;0.222785!10570-108B3;0.198858!10571-108B4;0.173555!10647-109A8;0.120133!10752-110D5;0.233351!10782-110G8;0.0541451!10726-110A6;0.971618!10018-101C9;0.121995!10086-102B5;0.0455018!10182-103D2;0.0250702!10165-103B3;2.35928e-05!10499-107C4;1.35587e-05!10408-106B3;0.0320792!10019-101D1;0.586429!10068-101I5;0.766093!10075-102A3;0.789661!10077-102A5;0.389862!10727-110A7;0.524542!10775-110G1;0.026141!10412-106B7;0.233414!12231-129F8;0.414674!12232-129F9;0.96509!12233-129G1;0.749679!12234-129G2;0.9067!10414-106B9;0.826882!10170-103B8;0.907228!10183-103D3;2.06859e-06!10150-102I6;1.32063e-05!10174-103C3;4.19996e-06!10155-103A2;0.000830047!10038-101F2;5.59524e-05!10838-111E1;4.89216e-05!10759-110E3;0.599566!10514-107E1;0.306452!10465-106H6;0.165982!10691-109F7;0.235943!10843-111E6;0.0158202!10844-111E7;0.38744!11747-123G1;0.088445!11748-123G2;0.54237!11749-123G3;0.645437!11750-123G4;0.515765!11751-123G5;0.730618!11840-124H4;0.943915!11752-123G6;0.543975!11753-123G7;0.734!11754-123G8;0.881059!11755-123G9;0.36343!11756-123H1;0.746697!11833-124G6;0.121515!11760-123H5;0.795816!11836-124G9;0.894719!11758-123H3;0.418213!11835-124G8;0.0952444!11762-123H7;0.317953!11838-124H2;0.877594!11757-123H2;0.716756!11759-123H4;0.386024!11761-123H6;0.807285!11842-124H6;0.66687!11837-124H1;0.394984!10568-108B1;0.429656!13230-141I8;0.748636!13231-141I9;0.109214!10696-109G3;0.228253!10493-107B7;0.45271!10494-107B8;0.037956!10850-111F4;0.169576!10851-111F5;0.0107838!10852-111F6;0.279808!10853-111F7;0.614907!10854-111F8;0.124905!10855-111F9;0.267317!10856-111G1;0.936897!10847-111F1;0.016305!10846-111E9;0.451162!10848-111F2;4.92639e-05!10845-111E8;0.0515247!10857-111G2;0.338628!10858-111G3;0.0751875!10156-103A3;0.0635383!11901-125F2;6.49103e-06!11902-125F3;0.0364386!11903-125F4;0.0196955!10689-109F5;0.0272243!10648-109A9;0.139817!10784-110H1;0.0372867!10744-110C6;0.0118224!10772-110F7;0.440386!10474-106I6;0.032111!10600-108E6;0.101215!10684-109E9;0.739007!12226-129F3;0.0262571!12227-129F4;0.120331!10508-107D4;0.0315368!10539-107G8;0.0754858!10607-108F4;0.0264561!10555-107I6;0.719211!10774-110F9;0.113969!10637-108I7;0.411317!10663-109C6;0.518369!10728-110A8;0.46742!10729-110A9;0.6392!10430-106D7;0.317507!10730-110B1;0.558348!10813-111B3;0.0714688!10812-111B2;0.952754!10037-101F1;0.706942!10172-103C1;2.20903e-06!10163-103B1;3.98737e-06!10076-102A4;1.39806e-05!10073-102A1;2.68733e-05!10036-101E9;0.000415448!10195-103E6;3.80017e-06!10277-104E7;1.13977e-05!10434-106E2;0.000106318!10550-107I1;0.063929!10545-107H5;0.307452!10544-107H4;0.0654913!10704-109H2;0.0537158!10510-107D6;0.875829!10558-107I9;0.958586!10020-101D2;0.576839!10732-110B3;0.489981!10049-101G4;0.0309312!10698-109G5;0.477733!10437-106E5;0.00812021!10417-106C3;0.00794277!10035-101E8;0.00110996!10171-103B9;1.99258e-06!10157-103A4;2.23148e-05!10034-101E7;6.00315e-06!10072-101I9;2.82435e-06!10199-103F1;0.00160173!10200-103F2;0.316359!10697-109G4;0.0335059!10723-110A3;0.28213!10179-103C8;0.0538941!10160-103A7;4.74462e-05!10180-103C9;0.00074681!10162-103A9;0.000974138!10021-101D3;0.000219911!10840-111E3;0.55256!10706-109H4;0.226451!10033-101E6;0.429367!10032-101E5;7.75647e-07!10490-107B4;4.89199e-06!10439-106E7;0.00755831!10022-101D4;0.175694!10176-103C5;0.0506203!10469-106I1;3.98574e-06!10067-101I4;0.0270555!10411-106B6;0.133944!10471-106I3;0.00125301!10030-101E3;0.0190647!10475-106I7;0.0252425!10787-110H4;0.93245!10477-106I9;0.378491!10695-109G2;0.642442!11771-123I7;0.368309!11772-123I8;0.997591!11773-123I9;0.940733!10093-102C3;0.62819!10442-106F1;0.348349!10442-106F1;0.520151!10201-103F3;0.738671!10639-108I9;0.128158!11843-124H7;0.0879843!11841-124H5;0.108512!10693-109F9;0.688725!10436-106E4;0.238169!10483-107A6;0.0183381!10282-104F3;0.119257!10023-101D5;0.298948!10066-101I3;0.130783!10065-101I2;0.489314!10800-110I8;0.0927306!10610-108F7;0.662224!10841-111E4;0.562974!10541-107H1;0.896635!10842-111E5;0.551712!10562-108A4;0.279274!10024-101D6;0.199518!10064-101I1;0.866516!10609-108F6;0.219855!10048-101G3;0.311762!10781-110G7;0.315525!10181-103D1;0.0124661!10159-103A6;0.000480803!10056-101H2;1.36395e-05!10737-110B8;0.00924293!10025-101D7;0.586248!10044-101F8;0.441178!10424-106D1;0.323023!10463-106H4;0.0827276!10616-108G4;0.0869645!10486-107A9;0.272071!10062-101H8;0.0330657!10202-103F4;0.746259!10158-103A5;0.227237!10441-106E9;0.000303164!10031-101E4;0.691536!10063-101H9;8.3588e-06!10063-101H9;0.00159489!11763-123H8;0.0336806!11765-123I1;0.389692!11768-123I4;0.965645!10807-111A6;0.887823!10790-110H7;0.427145!10798-110I6;0.786944!10786-110H3;0.0887159!10591-108D6;0.585415!10593-108D8;0.483649!10590-108D5;0.706768!10026-101D8;0.24414!10096-102C6;0.423404!10168-103B6;0.281327!10154-103A1;8.00378e-05!10209-103G2;1.51641e-05!10061-101H7;0.129055!10027-101D9;0.133609!10043-101F7;0.548899!10783-110G9;0.771702!10028-101E1;0.207325!10060-101H6;0.880304!10203-103F5;0.592692!10059-101H5;0.0898534!10047-101G2;0.0703111!10029-101E2;0.685143!10058-101H4;0.757623!10418-106C4;0.113313!10492-107B6;0.109462!10694-109G1;0.0774704!10797-110I5;0.329028!10057-101H3;0.0154962!10100-102D1;0.281738!10055-101H1;0.176046!10204-103F6;0.206534!10191-103E2;0.382534!10563-108A5;0.21843
|name=GATTGGTGCAG,motif851,CNhs13798,T:533.0(11.31%),B:4767.4(6.89%),P:1e-27
|name=GATTGGTGCAG,motif851,CNhs13798,T:533.0(11.31%),B:4767.4(6.89%),P:1e-27
|tomtom_result=HAP3#MA0314.1;3;0.000397303;0.189116;0.378232;11;GATTGGTGCAG;TCTGATTGGTTCAGA;+!NFYA#MA0060.1;5;0.00204386;0.972877;0.972877;11;GATTGGTGCAG;GCGCTGATTGGCTGAG;-!PHD1#MA0355.1;-3;0.00415234;1.97651;1;8;GATTGGTGCAG;TGCTGCAGGT;-!STP2#MA0395.1;1;0.00975719;4.64442;1;11;GATTGGTGCAG;TGATCGGCGCCGCACGACGA;+!Lag1#MA0193.1;-2;0.0140983;6.7108;1;7;GATTGGTGCAG;TTGGTAG;-!Tal1::Gata1#MA0140.1;2;0.0162129;7.71735;1;11;GATTGGTGCAG;CTGGTGGGGACAGATAAG;+!HAP2#MA0313.1;-2;0.0188714;8.98281;1;5;GATTGGTGCAG;TTGGT;+!PBX1#MA0070.1;3;0.0192927;9.18331;1;9;GATTGGTGCAG;TTTGATTGATGG;-!Ar#MA0007.1;0;0.0201856;9.60836;1;11;GATTGGTGCAG;GGCGGGTACACGATGTTCTTAT;-
}}
}}

Latest revision as of 13:45, 7 September 2012

Full Name: GATTGGTGCAG,motif851,CNhs13798,T:533.0(11.31%),B:4767.4(6.89%),P:1e-27

Motif matrix
POACGT
175.15352.767363.50641.574
2371.50143.17363.42754.899
344.23955.96567.158365.638
454.8990.53383.148394.42
567.15814.391367.23784.214
643.17377.818349.11562.894
714.9242.13254.899461.045
854.89941.574386.95849.569
91.066454.11671.9555.863
10407.74549.03611.72664.493
1120.78768.224342.186101.803

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
HAP3#MA0314.130.0003973030.1891160.37823211GATTGGTGCAGTCTGATTGGTTCAGA+
NFYA#MA0060.150.002043860.9728770.97287711GATTGGTGCAGGCGCTGATTGGCTGAG-
PHD1#MA0355.1-30.004152341.9765118GATTGGTGCAGTGCTGCAGGT-
STP2#MA0395.110.009757194.64442111GATTGGTGCAGTGATCGGCGCCGCACGACGA+
Lag1#MA0193.1-20.01409836.710817GATTGGTGCAGTTGGTAG-
Tal1::Gata1#MA0140.120.01621297.71735111GATTGGTGCAGCTGGTGGGGACAGATAAG+
HAP2#MA0313.1-20.01887148.9828115GATTGGTGCAGTTGGT+
PBX1#MA0070.130.01929279.1833119GATTGGTGCAGTTTGATTGATGG-
Ar#MA0007.100.02018569.60836111GATTGGTGCAGGGCGGGTACACGATGTTCTTAT-
Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=MacroAPE_1083:GATTGGTGCAG,motif851&oldid=2134115"