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MacroAPE 1083:AGCASAGGA,motif488: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!1;607.959;0.759;97.911;52.371!2;0.759;0.759;756.723;0.759!3;91.839;665.643;0.759;0.759!4;600.369;0.759;0.759;157.113!5;0.759;361.284;293.733;1...")
 
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8;0.747111!10789-110H6;0.239022!10828-111C9;0.483296!10788-110H5;0.400282!10792-110H9;0.441523!10765-110E9;0.403014!10829-111D1;0.504588!10830-111D2;0.710965!10831-111D3;0.957673!10832-111D4;0.399361!10833-111D5;0.512716!10764-110E8;0.649264!10770-110F5;0.982238!10399-106A3;0.495899!10400-106A4;0.479931!10405-106A9;0.536396!10834-111D6;0.403136!10835-111D7;0.369691!10836-111D8;0.422454!10837-111D9;0.850705!10699-109G6;0.337509!10802-111A1;0.173028!10796-110I4;0.506696!10010-101C1;0.157368!10810-111A9;0.253301!10421-106C7;0.194206!10708-109H6;0.378164!12235-129G3;0.00328906!12236-129G4;0.517195!12237-129G5;0.385312!10167-103B5;0.267744!10151-102I7;0.349762!10428-106D5;0.222698!10795-110I3;0.0382871!10805-111A4;0.650913!10052-101G7;0.14487!10189-103D9;0.494072!10589-108D4;0.415435!10425-106D2;0.218925!10427-106D4;0.128271!10702-109G9;0.31738!10432-106D9;0.706156!10496-107C1;0.0576096!10718-109I7;0.0429869!10011-101C2;0.33627!10053-101G8;0.314274!10686-109F2;0.183413!10084-102B3;0.45249!10012-101C3;0.2264!10085-102B4;0.16463!10482-107A5;0.812701!10419-106C5;0.0147489!10080-102A8;0.043651!10760-110E4;0.692732!10709-109H7;0.105751!10710-109H8;0.00898576!10703-109H1;0.0433781!10719-109I8;0.0341556!10642-109A3;0.0443612!10177-103C6;0.0596751!10164-103B2;0.311058!10173-103C2;0.173221!10166-103B4;0.483298!10083-102B2;0.588698!10188-103D8;0.357584!10552-107I3;0.278921!10553-107I4;0.0660702!10013-101C4;0.265992!10536-107G5;0.73152!10618-108G6;0.425632!10423-106C9;0.0731731!10785-110H2;0.149012!12238-129G6;0.0367319!12239-129G7;0.707434!12240-129G8;0.374418!10416-106C2;0.384998!10801-110I9;0.851375!10766-110F1;0.312302!10824-111C5;0.401224!10825-111C6;0.604667!10826-111C7;0.417431!10454-106G4;0.636183!10409-106B4;0.375245!10638-108I8;0.658182!10636-108I6;0.0390241!10513-107D9;0.115371!10420-106C6;0.73215!10082-102B1;0.152733!10014-101C5;0.898751!10070-101I7;0.50532!10452-106G2;0.718727!10453-106G3;0.31993!10449-106F8;0.601501!10042-101F6;0.59934!10069-101I6;0.253605!10193-103E4;0.980676!10631-108I1;0.111096!10438-106E6;0.934477!10488-107B2;0.0620299!10196-103E7;0.122423!10071-101I8;0.550804!10071-101I8;0.538487!10041-101F5;0.89377!10451-106G1;0.0797633!10450-106F9;0.0893577!10604-108F1;0.0353872!10605-108F2;0.000512177!10606-108F3;0.00448306!10603-108E9;0.000689672!10497-107C2;0.00785448!10448-106F7;0.179044!10643-109A4;0.198506!10426-106D3;0.26161!10431-106D8;0.183522!10197-103E8;0.164971!10443-106F2;0.360786!10815-111B5;0.115271!10816-111B6;0.2558!10817-111B7;0.150597!10015-101C6;0.231401!10410-106B5;0.566231!10054-101G9;0.673483!10758-110E2;0.511121!10711-109H9;0.988315!10040-101F4;0.167066!10470-106I2;0.241607!10415-106C1;0.102953!10198-103E9;0.289598!10614-108G2;0.362107!10612-108F9;0.099284!10549-107H9;0.0168958!10615-108G3;0.132508!10487-107B1;0.0833456!10433-106E1;0.0500038!10688-109F4;0.0294476!10444-106F3;0.287894!10444-106F3;0.53576!10485-107A8;0.4396!10413-106B8;0.28775!10175-103C4;0.0341344!10161-103A8;0.186305!12131-128D7;0.128109!10624-108H3;0.504954!10712-109I1;0.17466!10205-103F7;0.704103!10206-103F8;0.137047!10207-103F9;0.340008!10050-101G5;0.22679!10051-101G6;0.992053!10016-101C7;0.521753!10046-101G1;0.41059!10778-110G4;0.534649!10633-108I3;0.936772!10818-111B8;0.200092!10819-111B9;0.139798!10820-111C1;0.119187!10484-107A7;0.168149!10808-111A7;0.00668004!10169-103B7;0.647122!10153-102I9;0.291811!13425-144D5;0.274363!13433-144E4;0.280366!13437-144E8;0.361238!11904-125F5;0.319322!11905-125F6;0.552001!10039-101F3;0.795454!10791-110H8;0.218929!10017-101C8;0.146872!10045-101F9;0.13938!10509-107D5;0.910208!10839-111E2;0.0149801!10692-109F8;0.0437776!10079-102A7;0.169977!10078-102A6;0.164281!10721-110A1;0.304732!10569-108B2;0.158631!10570-108B3;0.698418!10571-108B4;0.921073!10647-109A8;0.548!10752-110D5;0.00178952!10782-110G8;0.928781!10726-110A6;0.611925!10018-101C9;0.218788!10086-102B5;0.138687!10182-103D2;0.0619132!10165-103B3;0.115377!10499-107C4;0.131054!10408-106B3;0.0049971!10019-101D1;0.269108!10068-101I5;0.343549!10075-102A3;0.474126!10077-102A5;0.457391!10727-110A7;0.258691!10775-110G1;0.465796!10412-106B7;0.771513!12231-129F8;0.367336!12232-129F9;0.548567!12233-129G1;0.488463!12234-129G2;0.304219!10414-106B9;0.685533!10170-103B8;0.0910208!10183-103D3;0.380044!10150-102I6;0.273782!10174-103C3;0.207944!10155-103A2;0.283266!10038-101F2;0.180259!10838-111E1;0.0802968!10759-110E3;0.129636!10514-107E1;0.00726439!10465-106H6;0.00801055!10691-109F7;0.0312748!10843-111E6;0.441022!10844-111E7;0.0883433!11747-123G1;0.101899!11748-123G2;0.0787371!11749-123G3;0.17957!11750-123G4;0.298612!11751-123G5;0.582108!11840-124H4;0.34423!11752-123G6;0.555692!11753-123G7;0.741252!11754-123G8;0.418372!11755-123G9;0.304935!11756-123H1;0.802182!11833-124G6;0.775465!11760-123H5;0.596668!11836-124G9;0.261598!11758-123H3;0.386471!11835-124G8;0.751753!11762-123H7;0.866729!11838-124H2;0.685918!11757-123H2;0.420925!11759-123H4;0.938262!11761-123H6;0.833133!11842-124H6;0.649517!11837-124H1;0.500498!10568-108B1;0.791937!13230-141I8;0.532724!13231-141I9;0.498999!10696-109G3;0.345984!10493-107B7;0.63596!10494-107B8;0.126775!10850-111F4;0.290229!10851-111F5;0.185258!10852-111F6;0.482327!10853-111F7;0.491146!10854-111F8;0.528249!10855-111F9;0.289511!10856-111G1;0.303243!10847-111F1;0.18014!10846-111E9;0.108323!10848-111F2;0.516203!10845-111E8;0.489758!10857-111G2;0.0136281!10858-111G3;0.18929!10156-103A3;0.363448!11901-125F2;0.229882!11902-125F3;0.621318!11903-125F4;0.562381!10689-109F5;0.44877!10648-109A9;0.0130476!10784-110H1;0.0874665!10744-110C6;0.124955!10772-110F7;0.210836!10474-106I6;0.897298!10600-108E6;0.207743!10684-109E9;0.450204!12226-129F3;0.0717615!12227-129F4;0.0718387!10508-107D4;0.1957!10539-107G8;0.206456!10607-108F4;0.169038!10555-107I6;0.0381661!10774-110F9;0.123682!10637-108I7;0.0894217!10663-109C6;0.000138318!10728-110A8;0.0895022!10729-110A9;0.022761!10430-106D7;0.615876!10730-110B1;0.259155!10813-111B3;0.0984655!10812-111B2;0.33575!10037-101F1;0.9481!10172-103C1;0.224817!10163-103B1;0.466069!10076-102A4;0.256555!10073-102A1;0.212582!10036-101E9;0.953012!10195-103E6;0.228291!10277-104E7;0.241858!10434-106E2;0.210097!10550-107I1;0.0717073!10545-107H5;0.0498058!10544-107H4;0.295334!10704-109H2;0.142076!10510-107D6;0.759284!10558-107I9;0.0215874!10020-101D2;0.0855998!10732-110B3;0.95944!10049-101G4;0.629589!10698-109G5;0.578903!10437-106E5;0.140264!10417-106C3;0.0629176!10035-101E8;0.060887!10171-103B9;0.197729!10157-103A4;0.354805!10034-101E7;0.189408!10072-101I9;0.250139!10199-103F1;0.839588!10200-103F2;0.691289!10697-109G4;0.390683!10723-110A3;0.000510288!10179-103C8;0.107764!10160-103A7;0.668059!10180-103C9;0.70221!10162-103A9;0.664697!10021-101D3;0.617177!10840-111E3;0.819146!10706-109H4;0.497505!10033-101E6;0.351704!10032-101E5;0.0930464!10490-107B4;0.190994!10439-106E7;0.0710834!10022-101D4;0.25604!10176-103C5;0.377188!10469-106I1;0.207302!10067-101I4;0.266772!10411-106B6;0.768177!10471-106I3;0.142001!10030-101E3;0.0311257!10475-106I7;0.393524!10787-110H4;0.0916106!10477-106I9;0.378691!10695-109G2;0.203206!11771-123I7;0.563811!11772-123I8;0.546177!11773-123I9;0.404422!10093-102C3;0.62699!10442-106F1;0.897816!10442-106F1;0.00161661!10201-103F3;0.000259637!10639-108I9;0.408107!11843-124H7;0.0477868!11841-124H5;0.0142406!10693-109F9;0.00695236!10436-106E4;0.00793128!10483-107A6;0.105674!10282-104F3;0.0977919!10023-101D5;0.818544!10066-101I3;0.906323!10065-101I2;0.733349!10800-110I8;0.838809!10610-108F7;0.0995116!10841-111E4;0.0807986!10541-107H1;0.0798316!10842-111E5;0.0362687!10562-108A4;0.166732!10024-101D6;0.0319939!10064-101I1;0.247648!10609-108F6;0.12492!10048-101G3;0.127452!10781-110G7;0.557104!10181-103D1;0.00935911!10159-103A6;0.0720365!10056-101H2;0.116291!10737-110B8;0.324788!10025-101D7;0.755341!10044-101F8;0.301118!10424-106D1;0.249536!10463-106H4;0.646503!10616-108G4;0.12125!10486-107A9;0.0201998!10062-101H8;0.0296744!10202-103F4;0.907958!10158-103A5;0.545389!10441-106E9;0.201116!10031-101E4;0.127581!10063-101H9;0.250713!10063-101H9;0.841787!11763-123H8;0.211755!11765-123I1;0.729732!11768-123I4;0.694146!10807-111A6;0.618311!10790-110H7;0.367479!10798-110I6;0.237682!10786-110H3;0.184608!10591-108D6;0.447908!10593-108D8;0.429497!10590-108D5;0.927634!10026-101D8;0.291347!10096-102C6;0.66528!10168-103B6;0.135271!10154-103A1;0.099085!10209-103G2;0.182849!10061-101H7;0.286329!10027-101D9;0.914455!10043-101F7;0.325941!10783-110G9;0.330367!10028-101E1;0.259963!10060-101H6;0.98562!10203-103F5;0.746703!10059-101H5;0.47017!10047-101G2;0.84454!10029-101E2;0.332595!10058-101H4;0.417627!10418-106C4;0.82885!10492-107B6;0.0909069!10694-109G1;0.0654775!10797-110I5;0.200826!10057-101H3;0.00717353!10100-102D1;0.15745!10055-101H1;0.738841!10204-103F6;0.933534!10191-103E2;0.46025!10563-108A5;0.190722
|name=AGCASAGGA,motif488,CNhs10633,T:759.0(25.44%),B:12115.7(16.81%),P:1e-32
|name=AGCASAGGA,motif488,CNhs10633,T:759.0(25.44%),B:12115.7(16.81%),P:1e-32
|tomtom_result=SPIB#MA0081.1;-3;0.00792772;3.77359;1;6;AGCACAGGA;AGAGGAA;+!NRG1#MA0347.1;0;0.0130647;6.2188;1;9;AGCACAGGA;TGCGATGGACCCTGATCTAG;-!RUNX1#MA0002.2;2;0.0138796;6.6067;1;9;AGCACAGGA;AAACCACAGAC;-!MET28#MA0332.1;-1;0.014844;7.06575;1;6;AGCACAGGA;CCACAG;-!GAL4#MA0299.1;3;0.0164701;7.83977;1;9;AGCACAGGA;CGGGGAACAGTACTC;+
}}
}}

Latest revision as of 14:02, 7 September 2012

Full Name: AGCASAGGA,motif488,CNhs10633,T:759.0(25.44%),B:12115.7(16.81%),P:1e-32

Motif matrix
POACGT
1607.9590.75997.91152.371
20.7590.759756.7230.759
391.839665.6430.7590.759
4600.3690.7590.759157.113
50.759361.284293.733103.224
6756.7230.7590.7590.759
70.7590.759756.7230.759
80.759186.714425.04146.487
9756.7230.7590.7590.759

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation

SPIB#MA0081.1-30.007927723.7735916AGCACAGGAAGAGGAA+
NRG1#MA0347.100.01306476.218819AGCACAGGATGCGATGGACCCTGATCTAG-
RUNX1#MA0002.220.01387966.606719AGCACAGGAAAACCACAGAC-
MET28#MA0332.1-10.0148447.0657516AGCACAGGACCACAG-
GAL4#MA0299.130.01647017.8397719AGCACAGGACGGGGAACAGTACTC+