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MacroAPE 1083:GTTGCTCAACAG,motif852: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!1;58.995;45.657;362.178;46.17!2;34.371;40.527;42.066;396.036!3;46.683;12.825;48.222;405.27!4;46.683;53.865;361.665;50.787!5;38.475;406.809;38....")
 
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H6;0.577433!10828-111C9;0.656815!10788-110H5;0.318118!10792-110H9;0.829326!10765-110E9;0.438181!10829-111D1;0.702891!10830-111D2;0.905531!10831-111D3;0.478545!10832-111D4;0.474737!10833-111D5;0.603309!10764-110E8;0.46537!10770-110F5;0.667214!10399-106A3;0.432521!10400-106A4;0.814947!10405-106A9;0.890825!10834-111D6;0.762741!10835-111D7;0.836135!10836-111D8;0.845378!10837-111D9;0.907871!10699-109G6;0.554576!10802-111A1;0.654688!10796-110I4;0.741611!10010-101C1;0.521909!10810-111A9;0.805928!10421-106C7;0.787059!10708-109H6;0.466354!12235-129G3;0.540585!12236-129G4;0.190808!12237-129G5;0.508165!10167-103B5;0.0254366!10151-102I7;0.82743!10428-106D5;0.939973!10795-110I3;0.604181!10805-111A4;0.729306!10052-101G7;0.689356!10189-103D9;0.313541!10589-108D4;0.0838803!10425-106D2;0.98846!10427-106D4;0.915032!10702-109G9;0.431525!10432-106D9;0.736872!10496-107C1;0.785213!10718-109I7;0.880257!10011-101C2;0.748051!10053-101G8;0.513003!10686-109F2;0.525585!10084-102B3;0.886527!10012-101C3;0.475213!10085-102B4;0.767485!10482-107A5;0.197295!10419-106C5;0.999839!10080-102A8;0.907046!10760-110E4;0.33685!10709-109H7;0.232558!10710-109H8;0.619866!10703-109H1;0.151986!10719-109I8;0.299703!10642-109A3;0.212759!10177-103C6;0.0337345!10164-103B2;0.793952!10173-103C2;0.806633!10166-103B4;0.727426!10083-102B2;0.854507!10188-103D8;0.533597!10552-107I3;0.771983!10553-107I4;0.798979!10013-101C4;0.0775609!10536-107G5;0.883239!10618-108G6;0.269083!10423-106C9;0.410132!10785-110H2;0.506998!12238-129G6;0.329816!12239-129G7;0.723321!12240-129G8;0.577515!10416-106C2;0.42582!10801-110I9;0.88349!10766-110F1;0.897731!10824-111C5;0.910953!10825-111C6;0.471!10826-111C7;0.532066!10454-106G4;0.526364!10409-106B4;0.975987!10638-108I8;0.890108!10636-108I6;0.426511!10513-107D9;0.43143!10420-106C6;0.198211!10082-102B1;0.736158!10014-101C5;0.114974!10070-101I7;0.547212!10452-106G2;0.103558!10453-106G3;0.822327!10449-106F8;0.486025!10042-101F6;0.464357!10069-101I6;0.836084!10193-103E4;0.285969!10631-108I1;0.828531!10438-106E6;0.532332!10488-107B2;0.424542!10196-103E7;0.329056!10071-101I8;0.868958!10071-101I8;0.226289!10041-101F5;0.342589!10451-106G1;0.825197!10450-106F9;0.602929!10604-108F1;0.74915!10605-108F2;0.739896!10606-108F3;0.828774!10603-108E9;0.79094!10497-107C2;0.838191!10448-106F7;0.228814!10643-109A4;0.676871!10426-106D3;0.777331!10431-106D8;0.147578!10197-103E8;0.039924!10443-106F2;0.658345!10815-111B5;0.824787!10816-111B6;0.198401!10817-111B7;0.327352!10015-101C6;0.223047!10410-106B5;0.922462!10054-101G9;0.595015!10758-110E2;0.568901!10711-109H9;0.529391!10040-101F4;0.845249!10470-106I2;0.802923!10415-106C1;0.157473!10198-103E9;0.860318!10614-108G2;0.385446!10612-108F9;0.280059!10549-107H9;0.66755!10615-108G3;0.507402!10487-107B1;0.831978!10433-106E1;0.577089!10688-109F4;0.371331!10444-106F3;0.0790156!10444-106F3;0.15627!10485-107A8;0.0809758!10413-106B8;0.17876!10175-103C4;0.59724!10161-103A8;0.590444!12131-128D7;0.862495!10624-108H3;0.73065!10712-109I1;0.257921!10205-103F7;0.915447!10206-103F8;0.503627!10207-103F9;0.308947!10050-101G5;0.371145!10051-101G6;0.443902!10016-101C7;0.578994!10046-101G1;0.451014!10778-110G4;0.311184!10633-108I3;0.289373!10818-111B8;0.598184!10819-111B9;0.786771!10820-111C1;0.78918!10484-107A7;0.816918!10808-111A7;0.170943!10169-103B7;0.740641!10153-102I9;0.947699!13425-144D5;0.967345!13433-144E4;0.905681!13437-144E8;0.720045!11904-125F5;0.863138!11905-125F6;0.945337!10039-101F3;0.725452!10791-110H8;0.749421!10017-101C8;0.0191373!10045-101F9;0.37077!10509-107D5;0.970971!10839-111E2;0.413377!10692-109F8;0.192931!10079-102A7;0.318255!10078-102A6;0.523248!10721-110A1;0.537073!10569-108B2;0.605999!10570-108B3;0.573423!10571-108B4;0.8285!10647-109A8;0.709269!10752-110D5;0.460487!10782-110G8;0.909335!10726-110A6;0.852277!10018-101C9;0.0990876!10086-102B5;0.612908!10182-103D2;0.398672!10165-103B3;0.998002!10499-107C4;0.944614!10408-106B3;0.61574!10019-101D1;0.0783916!10068-101I5;0.466112!10075-102A3;0.460457!10077-102A5;0.455678!10727-110A7;0.716047!10775-110G1;0.644871!10412-106B7;0.345714!12231-129F8;0.00980336!12232-129F9;0.982208!12233-129G1;0.703047!12234-129G2;0.953958!10414-106B9;0.913954!10170-103B8;0.98224!10183-103D3;0.961932!10150-102I6;0.869144!10174-103C3;0.927319!10155-103A2;0.916956!10038-101F2;0.894854!10838-111E1;0.753354!10759-110E3;0.25632!10514-107E1;0.469499!10465-106H6;0.714164!10691-109F7;0.820606!10843-111E6;0.704613!10844-111E7;0.464928!11747-123G1;0.811662!11748-123G2;0.259214!11749-123G3;0.113027!11750-123G4;0.662606!11751-123G5;0.653142!11840-124H4;0.991306!11752-123G6;0.47596!11753-123G7;0.92505!11754-123G8;0.99995!11755-123G9;0.326861!11756-123H1;0.850038!11833-124G6;0.415609!11760-123H5;0.882796!11836-124G9;0.675284!11758-123H3;0.451382!11835-124G8;0.715457!11762-123H7;0.881566!11838-124H2;0.63324!11757-123H2;0.667166!11759-123H4;0.690754!11761-123H6;0.351035!11842-124H6;0.96181!11837-124H1;0.362985!10568-108B1;0.497577!13230-141I8;0.81117!13231-141I9;0.0993336!10696-109G3;0.133071!10493-107B7;0.711464!10494-107B8;0.589609!10850-111F4;0.172233!10851-111F5;0.744926!10852-111F6;0.108402!10853-111F7;0.0173757!10854-111F8;0.325133!10855-111F9;0.201289!10856-111G1;0.167415!10847-111F1;0.172278!10846-111E9;0.20049!10848-111F2;0.212177!10845-111E8;0.412451!10857-111G2;0.328975!10858-111G3;0.190984!10156-103A3;0.0570955!11901-125F2;0.990258!11902-125F3;0.444211!11903-125F4;0.737412!10689-109F5;0.430311!10648-109A9;0.423683!10784-110H1;0.136047!10744-110C6;0.308737!10772-110F7;0.64145!10474-106I6;0.766268!10600-108E6;0.0912391!10684-109E9;0.610227!12226-129F3;0.364438!12227-129F4;0.201404!10508-107D4;0.710407!10539-107G8;0.0609886!10607-108F4;0.22139!10555-107I6;0.386627!10774-110F9;0.0791004!10637-108I7;0.799871!10663-109C6;0.26951!10728-110A8;0.923097!10729-110A9;0.24727!10430-106D7;0.262823!10730-110B1;0.74253!10813-111B3;0.812965!10812-111B2;0.24762!10037-101F1;0.368129!10172-103C1;0.812334!10163-103B1;0.84149!10076-102A4;0.996843!10073-102A1;0.711386!10036-101E9;0.291711!10195-103E6;0.584974!10277-104E7;0.885335!10434-106E2;0.671055!10550-107I1;0.0122538!10545-107H5;0.337053!10544-107H4;4.58326e-05!10704-109H2;0.0793007!10510-107D6;0.446931!10558-107I9;0.263329!10020-101D2;0.068992!10732-110B3;0.40465!10049-101G4;0.686161!10698-109G5;0.0897421!10437-106E5;0.545139!10417-106C3;0.477842!10035-101E8;0.793461!10171-103B9;0.753577!10157-103A4;0.686277!10034-101E7;0.983378!10072-101I9;0.724576!10199-103F1;0.188149!10200-103F2;0.330872!10697-109G4;0.795196!10723-110A3;0.146102!10179-103C8;0.0489862!10160-103A7;0.590614!10180-103C9;0.868481!10162-103A9;0.229322!10021-101D3;0.2646!10840-111E3;0.987457!10706-109H4;0.816328!10033-101E6;0.930421!10032-101E5;0.879378!10490-107B4;0.647667!10439-106E7;0.924809!10022-101D4;0.883749!10176-103C5;0.846875!10469-106I1;0.96703!10067-101I4;0.839959!10411-106B6;0.291681!10471-106I3;0.223012!10030-101E3;0.720302!10475-106I7;0.494186!10787-110H4;0.747692!10477-106I9;0.523275!10695-109G2;0.946276!11771-123I7;0.305725!11772-123I8;6.87566e-05!11773-123I9;0.152074!10093-102C3;0.147922!10442-106F1;0.534023!10442-106F1;0.363562!10201-103F3;0.373675!10639-108I9;0.986806!11843-124H7;0.401306!11841-124H5;0.496362!10693-109F9;0.767561!10436-106E4;0.221812!10483-107A6;0.561403!10282-104F3;0.489755!10023-101D5;0.936895!10066-101I3;0.934408!10065-101I2;0.230649!10800-110I8;0.708647!10610-108F7;0.352664!10841-111E4;0.563713!10541-107H1;0.598635!10842-111E5;0.36443!10562-108A4;0.907219!10024-101D6;0.862504!10064-101I1;0.54584!10609-108F6;0.157185!10048-101G3;0.667945!10781-110G7;0.661468!10181-103D1;0.680597!10159-103A6;0.747161!10056-101H2;0.90655!10737-110B8;0.272628!10025-101D7;0.125164!10044-101F8;0.204974!10424-106D1;0.0929451!10463-106H4;0.839183!10616-108G4;0.0264208!10486-107A9;0.00508339!10062-101H8;0.259395!10202-103F4;0.1348!10158-103A5;0.776413!10441-106E9;0.659212!10031-101E4;0.192302!10063-101H9;0.546464!10063-101H9;0.317593!11763-123H8;0.78795!11765-123I1;0.221018!11768-123I4;0.548612!10807-111A6;0.346101!10790-110H7;0.798549!10798-110I6;0.929841!10786-110H3;0.402182!10591-108D6;0.222608!10593-108D8;0.396428!10590-108D5;0.145636!10026-101D8;0.421535!10096-102C6;0.777389!10168-103B6;0.572765!10154-103A1;0.825237!10209-103G2;0.945421!10061-101H7;0.839191!10027-101D9;0.538507!10043-101F7;0.470964!10783-110G9;0.604634!10028-101E1;0.444748!10060-101H6;0.747765!10203-103F5;0.712537!10059-101H5;0.781381!10047-101G2;0.855603!10029-101E2;0.522975!10058-101H4;0.800953!10418-106C4;0.587784!10492-107B6;0.257069!10694-109G1;0.462441!10797-110I5;0.267416!10057-101H3;0.51065!10100-102D1;0.235876!10055-101H1;0.46116!10204-103F6;0.461667!10191-103E2;0.832842!10563-108A5;0.098445
|name=GTTGCTCAACAG,motif852,CNhs12549,T:513.0(13.15%),B:6441.1(7.96%),P:1e-27
|name=GTTGCTCAACAG,motif852,CNhs12549,T:513.0(13.15%),B:6441.1(7.96%),P:1e-27
|tomtom_result=CEBPA#MA0102.2;0;0.00195271;0.92949;0.823697;9;GTTGCTCAACAG;ATTGCGAAA;-!MAC1#MA0326.1;0;0.00248321;1.18201;0.823697;8;GTTGCTCAACAG;TTTGCTCA;+!Cebpa#MA0102.1;-1;0.00502868;2.39365;1;11;GTTGCTCAACAG;TTTCGCAATCTT;+!BRCA1#MA0133.1;-5;0.0102626;4.88501;1;7;GTTGCTCAACAG;ACAACAC;+!NFE2L2#MA0150.1;0;0.0184852;8.79895;1;11;GTTGCTCAACAG;ATGACTCAGCA;+!HLF#MA0043.1;1;0.0189184;9.00516;1;11;GTTGCTCAACAG;GGTTACGCAATT;+
}}
}}

Latest revision as of 14:03, 7 September 2012

Full Name: GTTGCTCAACAG,motif852,CNhs12549,T:513.0(13.15%),B:6441.1(7.96%),P:1e-27

Motif matrix
POACGT
158.99545.657362.17846.17
234.37140.52742.066396.036
346.68312.82548.222405.27
446.68353.865361.66550.787
538.475406.80938.98828.728
644.11857.96929.241381.672
744.631370.38650.27447.709
8411.42646.68319.49435.397
9396.03637.44946.1733.345
1051.3363.71758.48239.501
11392.44534.37126.67659.508
1255.91746.683369.3641.04

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
CEBPA#MA0102.200.001952710.929490.8236979GTTGCTCAACAGATTGCGAAA-
MAC1#MA0326.100.002483211.182010.8236978GTTGCTCAACAGTTTGCTCA+
Cebpa#MA0102.1-10.005028682.39365111GTTGCTCAACAGTTTCGCAATCTT+
BRCA1#MA0133.1-50.01026264.8850117GTTGCTCAACAGACAACAC+
NFE2L2#MA0150.100.01848528.79895111GTTGCTCAACAGATGACTCAGCA+
HLF#MA0043.110.01891849.00516111GTTGCTCAACAGGGTTACGCAATT+
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