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MacroAPE 1083:16-TCAGCTGACG: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!1;340.615;101.34;517.96;1855.085!2;121.045;2429.345;101.34;163.27!3;2007.095;492.625;213.94;101.34!4;50.67;70.375;2502.535;191.42!5;264.61;173...")
 
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06H5;0.0380489!10827-111C8;0.00265513!10789-110H6;0.0256302!10828-111C9;0.241698!10788-110H5;0.116408!10792-110H9;0.0697741!10765-110E9;0.234709!10829-111D1;0.130964!10830-111D2;0.0127448!10831-111D3;0.11476!10832-111D4;0.0157309!10833-111D5;0.0716853!10764-110E8;0.0528747!10770-110F5;0.200306!10399-106A3;0.0590282!10400-106A4;0.0202781!10405-106A9;0.0404744!10834-111D6;0.0248562!10835-111D7;0.0703827!10836-111D8;0.293509!10837-111D9;0.0385972!10699-109G6;0.0506687!10802-111A1;0.0914867!10796-110I4;0.513571!10010-101C1;0.243546!10810-111A9;0.0336469!10421-106C7;0.00955841!10708-109H6;0.0628174!12235-129G3;0.0109648!12236-129G4;0.130084!12237-129G5;0.265843!10167-103B5;0.0256438!10151-102I7;0.0497285!10428-106D5;0.0970925!10795-110I3;0.865097!10805-111A4;0.179071!10052-101G7;0.293191!10189-103D9;0.148987!10589-108D4;0.46018!10425-106D2;0.268518!10427-106D4;0.834424!10702-109G9;0.600541!10432-106D9;0.474504!10496-107C1;0.00699359!10718-109I7;0.163443!10011-101C2;0.110995!10053-101G8;0.0900221!10686-109F2;0.513547!10084-102B3;0.424119!10012-101C3;0.0683014!10085-102B4;0.0269371!10482-107A5;0.119657!10419-106C5;0.198346!10080-102A8;0.359567!10760-110E4;0.653474!10709-109H7;0.0118586!10710-109H8;0.00961875!10703-109H1;0.000715626!10719-109I8;0.0659211!10642-109A3;0.00743394!10177-103C6;0.78322!10164-103B2;0.0780235!10173-103C2;0.108037!10166-103B4;0.478282!10083-102B2;0.389113!10188-103D8;0.316303!10552-107I3;0.0631668!10553-107I4;0.00673954!10013-101C4;0.0531795!10536-107G5;0.203741!10618-108G6;0.316048!10423-106C9;0.019811!10785-110H2;0.159501!12238-129G6;0.0098594!12239-129G7;0.368557!12240-129G8;0.923066!10416-106C2;0.691341!10801-110I9;0.0333765!10766-110F1;0.181326!10824-111C5;0.16528!10825-111C6;0.0465361!10826-111C7;0.0525752!10454-106G4;0.0697241!10409-106B4;0.0806603!10638-108I8;0.141215!10636-108I6;0.0817115!10513-107D9;0.0102362!10420-106C6;0.208161!10082-102B1;0.119276!10014-101C5;0.291761!10070-101I7;0.206084!10452-106G2;0.159956!10453-106G3;0.406545!10449-106F8;0.150199!10042-101F6;0.209671!10069-101I6;0.0406116!10193-103E4;0.0570742!10631-108I1;0.0455323!10438-106E6;0.135135!10488-107B2;0.00189983!10196-103E7;0.380182!10071-101I8;0.144427!10071-101I8;0.530695!10041-101F5;0.225843!10451-106G1;0.0810264!10450-106F9;0.382565!10604-108F1;0.0236733!10605-108F2;0.000786426!10606-108F3;0.00588521!10603-108E9;0.00609529!10497-107C2;0.012456!10448-106F7;0.00362637!10643-109A4;0.284535!10426-106D3;0.0674534!10431-106D8;0.0052095!10197-103E8;0.0365648!10443-106F2;0.076408!10815-111B5;0.0668225!10816-111B6;0.00278277!10817-111B7;0.00308909!10015-101C6;0.00268437!10410-106B5;0.156146!10054-101G9;0.91658!10758-110E2;0.0629106!10711-109H9;0.000149337!10040-101F4;0.022941!10470-106I2;0.0507824!10415-106C1;0.00175606!10198-103E9;0.133786!10614-108G2;0.21346!10612-108F9;0.0103372!10549-107H9;0.0998042!10615-108G3;0.297884!10487-107B1;0.747874!10433-106E1;0.227583!10688-109F4;0.107378!10444-106F3;0.00103927!10444-106F3;0.0566135!10485-107A8;0.0768553!10413-106B8;0.0200183!10175-103C4;0.0346987!10161-103A8;0.05753!12131-128D7;0.0543933!10624-108H3;0.204651!10712-109I1;0.667117!10205-103F7;0.395407!10206-103F8;0.0754603!10207-103F9;0.0702944!10050-101G5;0.211143!10051-101G6;0.172079!10016-101C7;0.0242315!10046-101G1;0.0391984!10778-110G4;0.0411796!10633-108I3;0.671499!10818-111B8;0.48917!10819-111B9;0.157783!10820-111C1;0.17129!10484-107A7;0.157392!10808-111A7;0.848103!10169-103B7;0.0263016!10153-102I9;0.114704!13425-144D5;0.0904983!13433-144E4;0.14416!13437-144E8;0.238494!11904-125F5;0.200348!11905-125F6;0.886577!10039-101F3;0.628118!10791-110H8;0.0534195!10017-101C8;0.012384!10045-101F9;0.1754!10509-107D5;0.356163!10839-111E2;0.0136357!10692-109F8;0.0220364!10079-102A7;0.0261218!10078-102A6;0.0292318!10721-110A1;0.0417237!10569-108B2;0.152251!10570-108B3;0.0931037!10571-108B4;0.244303!10647-109A8;0.0857848!10752-110D5;0.482885!10782-110G8;0.235699!10726-110A6;0.965826!10018-101C9;0.00523765!10086-102B5;0.16612!10182-103D2;0.127599!10165-103B3;0.0453464!10499-107C4;0.0444721!10408-106B3;0.211057!10019-101D1;0.0146119!10068-101I5;0.356062!10075-102A3;0.698585!10077-102A5;0.915557!10727-110A7;0.32327!10775-110G1;0.160677!10412-106B7;0.14196!12231-129F8;0.0671049!12232-129F9;0.575207!12233-129G1;0.375775!12234-129G2;0.299277!10414-106B9;0.335821!10170-103B8;0.376024!10183-103D3;0.0707445!10150-102I6;0.061897!10174-103C3;0.0637972!10155-103A2;0.0643436!10038-101F2;0.0838578!10838-111E1;0.0396662!10759-110E3;0.139088!10514-107E1;0.00606988!10465-106H6;0.589896!10691-109F7;0.698642!10843-111E6;0.0527619!10844-111E7;0.234589!11747-123G1;0.736617!11748-123G2;0.446623!11749-123G3;0.776483!11750-123G4;0.963524!11751-123G5;0.111397!11840-124H4;0.107347!11752-123G6;0.072084!11753-123G7;0.234463!11754-123G8;0.165112!11755-123G9;0.678053!11756-123H1;0.906328!11833-124G6;0.662927!11760-123H5;0.015192!11836-124G9;0.691654!11758-123H3;0.978157!11835-124G8;0.573371!11762-123H7;0.44574!11838-124H2;0.72814!11757-123H2;0.642132!11759-123H4;0.645028!11761-123H6;0.221011!11842-124H6;0.457473!11837-124H1;0.145593!10568-108B1;0.416688!13230-141I8;0.809407!13231-141I9;0.573884!10696-109G3;0.700097!10493-107B7;0.486162!10494-107B8;0.0917282!10850-111F4;0.0414686!10851-111F5;0.0753254!10852-111F6;0.00193779!10853-111F7;0.0602061!10854-111F8;0.00135564!10855-111F9;0.105263!10856-111G1;0.000248686!10847-111F1;0.0700851!10846-111E9;0.00922815!10848-111F2;0.00776142!10845-111E8;0.0372442!10857-111G2;0.291317!10858-111G3;0.132258!10156-103A3;0.152734!11901-125F2;0.0663748!11902-125F3;0.328022!11903-125F4;0.361363!10689-109F5;0.302045!10648-109A9;0.123202!10784-110H1;0.622993!10744-110C6;0.164322!10772-110F7;0.62734!10474-106I6;0.00866489!10600-108E6;0.382252!10684-109E9;0.0264149!12226-129F3;0.0698993!12227-129F4;0.721519!10508-107D4;0.469084!10539-107G8;0.980122!10607-108F4;0.748936!10555-107I6;0.0817078!10774-110F9;0.309781!10637-108I7;0.000924848!10663-109C6;0.0269591!10728-110A8;0.157808!10729-110A9;0.000340042!10430-106D7;0.862266!10730-110B1;0.122168!10813-111B3;0.916488!10812-111B2;0.652972!10037-101F1;0.129458!10172-103C1;0.0610267!10163-103B1;0.0603696!10076-102A4;0.0664186!10073-102A1;0.07474!10036-101E9;0.191897!10195-103E6;0.0373315!10277-104E7;0.0528262!10434-106E2;0.00765888!10550-107I1;0.00749582!10545-107H5;0.0137843!10544-107H4;0.0706483!10704-109H2;0.0118879!10510-107D6;0.344549!10558-107I9;0.155032!10020-101D2;0.0022186!10732-110B3;0.228888!10049-101G4;0.0130869!10698-109G5;0.905862!10437-106E5;0.0500137!10417-106C3;0.000653709!10035-101E8;0.0475538!10171-103B9;0.0457713!10157-103A4;0.0556038!10034-101E7;0.0724885!10072-101I9;0.0413578!10199-103F1;0.287171!10200-103F2;0.594488!10697-109G4;0.0736771!10723-110A3;0.00883397!10179-103C8;0.0157909!10160-103A7;0.0553772!10180-103C9;0.0700045!10162-103A9;0.088358!10021-101D3;0.156055!10840-111E3;0.442681!10706-109H4;0.56377!10033-101E6;0.203087!10032-101E5;0.0617595!10490-107B4;0.0378943!10439-106E7;0.0102023!10022-101D4;0.0013863!10176-103C5;0.128448!10469-106I1;0.120414!10067-101I4;0.137388!10411-106B6;0.619653!10471-106I3;0.246669!10030-101E3;0.600334!10475-106I7;0.041509!10787-110H4;0.223348!10477-106I9;0.000230974!10695-109G2;0.547663!11771-123I7;0.465133!11772-123I8;0.209791!11773-123I9;0.0545788!10093-102C3;0.276627!10442-106F1;0.500819!10442-106F1;0.357586!10201-103F3;0.295964!10639-108I9;0.253693!11843-124H7;0.0587021!11841-124H5;0.0989648!10693-109F9;0.00465879!10436-106E4;0.0799755!10483-107A6;0.296394!10282-104F3;0.209071!10023-101D5;0.00683087!10066-101I3;0.0053791!10065-101I2;0.0291956!10800-110I8;0.126893!10610-108F7;0.320416!10841-111E4;0.864436!10541-107H1;0.0132068!10842-111E5;0.162617!10562-108A4;0.148644!10024-101D6;0.772763!10064-101I1;0.0955253!10609-108F6;0.436871!10048-101G3;0.832928!10781-110G7;0.192387!10181-103D1;0.94605!10159-103A6;0.0487613!10056-101H2;0.0245374!10737-110B8;0.14036!10025-101D7;0.681734!10044-101F8;0.217505!10424-106D1;0.60451!10463-106H4;0.551979!10616-108G4;0.0607596!10486-107A9;0.29599!10062-101H8;0.163919!10202-103F4;0.470482!10158-103A5;0.326058!10441-106E9;0.0402041!10031-101E4;0.0361521!10063-101H9;0.0394035!10063-101H9;0.228534!11763-123H8;0.338167!11765-123I1;0.796399!11768-123I4;0.520904!10807-111A6;0.991915!10790-110H7;0.0884977!10798-110I6;0.0366506!10786-110H3;0.109632!10591-108D6;0.0875368!10593-108D8;0.109011!10590-108D5;0.227945!10026-101D8;0.0731345!10096-102C6;0.049112!10168-103B6;0.334108!10154-103A1;0.0578075!10209-103G2;0.0695158!10061-101H7;0.0964969!10027-101D9;0.127757!10043-101F7;0.481936!10783-110G9;0.906938!10028-101E1;0.00543553!10060-101H6;0.183393!10203-103F5;0.196728!10059-101H5;0.0863252!10047-101G2;0.0854177!10029-101E2;0.348993!10058-101H4;0.133724!10418-106C4;0.103062!10492-107B6;0.167956!10694-109G1;0.0217622!10797-110I5;0.296926!10057-101H3;0.0189829!10100-102D1;0.171479!10055-101H1;0.0640361!10204-103F6;0.547583!10191-103E2;0.230766!10563-108A5;0.130064
|name=16-TCAGCTGACG,CNhs13544,BestGuess:TFAP4_si_HM09(0.738629634845809),T:2815.0(40.75%),B:13928.4(33.23%),P:1e-38
|name=16-TCAGCTGACG,CNhs13544,BestGuess:TFAP4_si_HM09(0.738629634845809),T:2815.0(40.75%),B:13928.4(33.23%),P:1e-38
|tomtom_result=YAP6#MA0418.1;2;0.00375631;1.788;1;10;TCAGCTGACG;GGTCTGATTACGTAAGCGAC;+!Mafb#MA0117.1;-3;0.00399952;1.90377;1;7;TCAGCTGACG;GCTGACGG;+!Myf#MA0055.1;2;0.00781035;3.71773;1;10;TCAGCTGACG;CAGCAGCTGCTG;-!HAP4#MA0315.1;5;0.0116717;5.55574;1;10;TCAGCTGACG;ACCAATCAGAGGCGA;+
}}
}}

Latest revision as of 14:12, 7 September 2012

Full Name: 16-TCAGCTGACG,CNhs13544,BestGuess:TFAP4_si_HM09(0.738629634845809),T:2815.0(40.75%),B:13928.4(33.23%),P:1e-38

Motif matrix
POACGT
1340.615101.34517.961855.085
2121.0452429.345101.34163.27
32007.095492.625213.94101.34
450.6770.3752502.535191.42
5264.611739.67129.49681.23
6115.415180.16230.832288.595
7616.485433.511280.825481.365
82192.885121.045410.9990.08
922.521632.767.561092.22
10441.955489.811216.08667.155

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
YAP6#MA0418.120.003756311.788110TCAGCTGACGGGTCTGATTACGTAAGCGAC+
Mafb#MA0117.1-30.003999521.9037717TCAGCTGACGGCTGACGG+
Myf#MA0055.120.007810353.71773110TCAGCTGACGCAGCAGCTGCTG-
HAP4#MA0315.150.01167175.55574110TCAGCTGACGACCAATCAGAGGCGA+
Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=MacroAPE_1083:16-TCAGCTGACG&oldid=2134275"