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MacroAPE 1083:ATCATTTCC,motif740: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!1;241.542;142.884;9.72;91.854!2;10.206;127.332;95.256;253.206!3;121.014;262.44;24.786;77.76!4;267.786;17.496;176.904;23.814!5;6.804;9.234;183....")
 
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0429-106D6;0.576081!10464-106H5;0.982045!10827-111C8;0.843159!10789-110H6;0.036917!10828-111C9;0.229802!10788-110H5;3.00897e-05!10792-110H9;0.727602!10765-110E9;0.00474432!10829-111D1;0.320167!10830-111D2;0.443103!10831-111D3;0.488838!10832-111D4;0.0931978!10833-111D5;0.397252!10764-110E8;0.910718!10770-110F5;0.620417!10399-106A3;0.0425186!10400-106A4;0.46895!10405-106A9;0.430281!10834-111D6;0.462012!10835-111D7;0.0482098!10836-111D8;0.531365!10837-111D9;0.652713!10699-109G6;0.460426!10802-111A1;0.113814!10796-110I4;0.783948!10010-101C1;0.675643!10810-111A9;0.740601!10421-106C7;0.506414!10708-109H6;0.401241!12235-129G3;0.675424!12236-129G4;0.394198!12237-129G5;0.929049!10167-103B5;0.731904!10151-102I7;0.526755!10428-106D5;0.489325!10795-110I3;0.689192!10805-111A4;0.219372!10052-101G7;0.542715!10189-103D9;0.145998!10589-108D4;0.46221!10425-106D2;0.274043!10427-106D4;0.157994!10702-109G9;0.498848!10432-106D9;0.429448!10496-107C1;0.311958!10718-109I7;0.47127!10011-101C2;0.176458!10053-101G8;0.197318!10686-109F2;0.201704!10084-102B3;0.220658!10012-101C3;0.242869!10085-102B4;0.489983!10482-107A5;0.0591262!10419-106C5;0.101032!10080-102A8;0.0301283!10760-110E4;0.371446!10709-109H7;0.657049!10710-109H8;0.78807!10703-109H1;0.155672!10719-109I8;0.456138!10642-109A3;0.280942!10177-103C6;0.242686!10164-103B2;0.62747!10173-103C2;0.461948!10166-103B4;0.486869!10083-102B2;0.459517!10188-103D8;0.357701!10552-107I3;0.327041!10553-107I4;0.300616!10013-101C4;0.182397!10536-107G5;0.299876!10618-108G6;0.106747!10423-106C9;0.29559!10785-110H2;0.283256!12238-129G6;0.132216!12239-129G7;0.127645!12240-129G8;0.680231!10416-106C2;0.0491167!10801-110I9;0.708481!10766-110F1;0.107739!10824-111C5;0.209192!10825-111C6;0.597275!10826-111C7;0.433038!10454-106G4;0.368889!10409-106B4;0.770889!10638-108I8;0.310901!10636-108I6;0.280535!10513-107D9;0.229124!10420-106C6;0.0436127!10082-102B1;0.53813!10014-101C5;0.113825!10070-101I7;0.618289!10452-106G2;0.58644!10453-106G3;0.427807!10449-106F8;0.421912!10042-101F6;0.353459!10069-101I6;0.807336!10193-103E4;0.201045!10631-108I1;0.636234!10438-106E6;0.611696!10488-107B2;0.280381!10196-103E7;0.130605!10071-101I8;0.141962!10071-101I8;0.905817!10041-101F5;0.16433!10451-106G1;0.478317!10450-106F9;0.555704!10604-108F1;0.0755229!10605-108F2;0.632549!10606-108F3;0.60326!10603-108E9;0.331547!10497-107C2;0.843049!10448-106F7;0.50015!10643-109A4;0.18718!10426-106D3;0.83668!10431-106D8;0.986832!10197-103E8;0.548514!10443-106F2;0.356336!10815-111B5;0.767213!10816-111B6;0.926659!10817-111B7;0.991065!10015-101C6;0.824394!10410-106B5;0.277097!10054-101G9;0.980484!10758-110E2;0.17487!10711-109H9;0.177577!10040-101F4;0.0818653!10470-106I2;0.383338!10415-106C1;0.321551!10198-103E9;0.952899!10614-108G2;0.257739!10612-108F9;0.365696!10549-107H9;0.181187!10615-108G3;0.384298!10487-107B1;0.139938!10433-106E1;0.545223!10688-109F4;0.0779486!10444-106F3;0.42079!10444-106F3;0.641083!10485-107A8;0.535971!10413-106B8;0.00216796!10175-103C4;0.0152969!10161-103A8;0.517251!12131-128D7;0.944174!10624-108H3;0.244209!10712-109I1;0.00418687!10205-103F7;0.761115!10206-103F8;0.441416!10207-103F9;0.0325909!10050-101G5;0.982826!10051-101G6;0.0115093!10016-101C7;0.0738452!10046-101G1;0.121957!10778-110G4;0.0488261!10633-108I3;0.683763!10818-111B8;0.0525017!10819-111B9;0.1151!10820-111C1;0.134374!10484-107A7;0.109075!10808-111A7;0.379307!10169-103B7;0.774906!10153-102I9;0.65431!13425-144D5;0.52301!13433-144E4;0.137318!13437-144E8;0.134844!11904-125F5;0.0717839!11905-125F6;0.00751422!10039-101F3;0.219014!10791-110H8;0.281813!10017-101C8;0.133093!10045-101F9;0.40361!10509-107D5;0.427788!10839-111E2;0.454769!10692-109F8;0.744702!10079-102A7;0.400795!10078-102A6;0.156311!10721-110A1;0.0582062!10569-108B2;0.282521!10570-108B3;0.227631!10571-108B4;0.325472!10647-109A8;0.441347!10752-110D5;0.405698!10782-110G8;0.665938!10726-110A6;0.920062!10018-101C9;0.607962!10086-102B5;0.801922!10182-103D2;0.360875!10165-103B3;0.87762!10499-107C4;0.852686!10408-106B3;0.594204!10019-101D1;0.0938411!10068-101I5;0.599207!10075-102A3;0.730912!10077-102A5;0.914148!10727-110A7;0.169911!10775-110G1;0.648233!10412-106B7;0.0107316!12231-129F8;0.969263!12232-129F9;0.366173!12233-129G1;0.748926!12234-129G2;0.679928!10414-106B9;0.545729!10170-103B8;0.119022!10183-103D3;0.475063!10150-102I6;0.55909!10174-103C3;0.63662!10155-103A2;0.746402!10038-101F2;0.874627!10838-111E1;0.935028!10759-110E3;0.236799!10514-107E1;0.311449!10465-106H6;0.527544!10691-109F7;0.643636!10843-111E6;0.765105!10844-111E7;0.430894!11747-123G1;0.385505!11748-123G2;0.492252!11749-123G3;0.957262!11750-123G4;0.717254!11751-123G5;0.431391!11840-124H4;0.904496!11752-123G6;0.103164!11753-123G7;0.327026!11754-123G8;0.367561!11755-123G9;0.767758!11756-123H1;0.595142!11833-124G6;0.462372!11760-123H5;0.336493!11836-124G9;0.531954!11758-123H3;0.745738!11835-124G8;0.721684!11762-123H7;0.639019!11838-124H2;0.988889!11757-123H2;0.640859!11759-123H4;0.630657!11761-123H6;0.365876!11842-124H6;0.800311!11837-124H1;0.708604!10568-108B1;0.718163!13230-141I8;0.614524!13231-141I9;0.885995!10696-109G3;0.875423!10493-107B7;0.00546766!10494-107B8;0.614827!10850-111F4;0.0995832!10851-111F5;0.0727511!10852-111F6;0.0721475!10853-111F7;0.433398!10854-111F8;0.749542!10855-111F9;0.0966048!10856-111G1;0.689094!10847-111F1;0.0481087!10846-111E9;0.461424!10848-111F2;0.703375!10845-111E8;0.681464!10857-111G2;0.207289!10858-111G3;0.21308!10156-103A3;0.965321!11901-125F2;0.64852!11902-125F3;0.695094!11903-125F4;0.578917!10689-109F5;0.381249!10648-109A9;0.333832!10784-110H1;0.0439374!10744-110C6;0.804224!10772-110F7;0.108513!10474-106I6;0.264054!10600-108E6;0.325956!10684-109E9;0.080915!12226-129F3;0.17986!12227-129F4;0.5347!10508-107D4;0.963264!10539-107G8;0.207827!10607-108F4;0.950822!10555-107I6;0.148646!10774-110F9;0.770793!10637-108I7;0.171794!10663-109C6;0.611399!10728-110A8;0.142268!10729-110A9;0.15885!10430-106D7;0.49904!10730-110B1;0.658941!10813-111B3;0.40005!10812-111B2;0.296858!10037-101F1;0.124693!10172-103C1;0.360103!10163-103B1;0.347357!10076-102A4;0.711085!10073-102A1;0.319854!10036-101E9;0.147971!10195-103E6;0.193441!10277-104E7;0.326023!10434-106E2;0.29858!10550-107I1;0.391144!10545-107H5;0.287014!10544-107H4;0.718805!10704-109H2;0.774775!10510-107D6;0.925888!10558-107I9;0.9321!10020-101D2;8.66866e-07!10732-110B3;0.761047!10049-101G4;0.902749!10698-109G5;0.36949!10437-106E5;0.952985!10417-106C3;0.574483!10035-101E8;0.138087!10171-103B9;0.350869!10157-103A4;0.387745!10034-101E7;0.595338!10072-101I9;0.365232!10199-103F1;0.235932!10200-103F2;0.0235136!10697-109G4;0.292647!10723-110A3;0.578678!10179-103C8;0.10068!10160-103A7;0.230117!10180-103C9;0.578338!10162-103A9;0.407069!10021-101D3;0.761568!10840-111E3;0.602706!10706-109H4;0.2367!10033-101E6;0.417181!10032-101E5;0.941838!10490-107B4;0.269846!10439-106E7;0.793683!10022-101D4;0.476985!10176-103C5;0.165954!10469-106I1;0.396446!10067-101I4;0.802404!10411-106B6;0.13086!10471-106I3;0.70931!10030-101E3;0.986856!10475-106I7;0.320781!10787-110H4;0.0709673!10477-106I9;0.753034!10695-109G2;0.522823!11771-123I7;0.0068757!11772-123I8;0.251744!11773-123I9;0.118888!10093-102C3;0.274084!10442-106F1;0.0713071!10442-106F1;0.878133!10201-103F3;0.783826!10639-108I9;0.287578!11843-124H7;0.359258!11841-124H5;0.351724!10693-109F9;0.584245!10436-106E4;0.211224!10483-107A6;0.321849!10282-104F3;0.825885!10023-101D5;0.077771!10066-101I3;0.394542!10065-101I2;0.0729632!10800-110I8;0.246651!10610-108F7;0.052466!10841-111E4;0.890319!10541-107H1;0.526041!10842-111E5;0.402804!10562-108A4;0.390022!10024-101D6;0.680115!10064-101I1;0.815626!10609-108F6;0.756054!10048-101G3;0.96581!10781-110G7;0.0199011!10181-103D1;0.295463!10159-103A6;0.935621!10056-101H2;0.538845!10737-110B8;0.516286!10025-101D7;0.466538!10044-101F8;0.374392!10424-106D1;0.492717!10463-106H4;0.291891!10616-108G4;0.245958!10486-107A9;0.0797712!10062-101H8;0.429647!10202-103F4;0.021391!10158-103A5;0.0841103!10441-106E9;0.782699!10031-101E4;0.170352!10063-101H9;0.168313!10063-101H9;0.157109!11763-123H8;0.434403!11765-123I1;0.751127!11768-123I4;0.687273!10807-111A6;0.983558!10790-110H7;0.11311!10798-110I6;0.116694!10786-110H3;0.122526!10591-108D6;0.582655!10593-108D8;0.905329!10590-108D5;0.734806!10026-101D8;0.335789!10096-102C6;0.0827778!10168-103B6;0.108553!10154-103A1;0.67185!10209-103G2;0.855338!10061-101H7;0.597827!10027-101D9;0.176192!10043-101F7;0.593823!10783-110G9;0.522288!10028-101E1;0.401294!10060-101H6;0.900982!10203-103F5;0.640055!10059-101H5;0.404027!10047-101G2;0.0741269!10029-101E2;0.204791!10058-101H4;0.843185!10418-106C4;0.141507!10492-107B6;0.708692!10694-109G1;0.37548!10797-110I5;0.170663!10057-101H3;0.541463!10100-102D1;0.0715924!10055-101H1;0.292148!10204-103F6;0.422373!10191-103E2;0.600923!10563-108A5;0.723558
|name=ATCATTTCC,motif740,CNhs13494,T:486.0(8.40%),B:3892.4(4.91%),P:1e-28
|name=ATCATTTCC,motif740,CNhs13494,T:486.0(8.40%),B:3892.4(4.91%),P:1e-28
|tomtom_result=Su(H)#MA0085.1;2;0.000142652;0.0679022;0.13577;9;ATCATTTCC;ATCTCGGTTCCCACAA;-!Pax5#MA0014.1;9;0.00145;0.690201;0.690026;9;ATCATTTCC;CCGCTACGCTTCAGTGCTCT;-!nub#MA0453.1;0;0.00332783;1.58405;0.944427;9;ATCATTTCC;CTAATTTGCATA;-!YRR1#MA0439.1;0;0.0046628;2.21949;0.944427;9;ATCATTTCC;CTTATCTCCGC;+!GABPA#MA0062.2;0;0.00496148;2.36167;0.944427;9;ATCATTTCC;GCCACTTCCGG;-!STAT1#MA0137.2;-2;0.00702155;3.34226;0.999747;7;ATCATTTCC;CATTTCCCGGAAACC;+!YRM1#MA0438.1;-3;0.00857373;4.0811;0.999747;6;ATCATTTCC;ATTTCCGT;-!HNF1A#MA0046.1;5;0.0093448;4.44813;0.999747;9;ATCATTTCC;GGTTAATAATTAAC;+!ELF5#MA0136.1;-2;0.0100814;4.79876;0.999747;7;ATCATTTCC;TACTTCCTT;+!br_Z4#MA0013.1;0;0.0149457;7.11415;0.999747;9;ATCATTTCC;TTTGTTTACTA;-!THI2#MA0407.1;6;0.0150903;7.183;0.999747;9;ATCATTTCC;GTTCTTAGAGTTTCC;-!ARO80#MA0273.1;2;0.0177233;8.43628;0.999747;9;ATCATTTCC;ACATACTTGCCGAGAATTATC;-!USV1#MA0413.1;-2;0.0206657;9.83688;0.999747;7;ATCATTTCC;AAATTCCCCCTGAATTTGTG;+!Sox17#MA0078.1;0;0.0208462;9.92278;0.999747;9;ATCATTTCC;TTCATTGTC;+
}}
}}

Latest revision as of 14:16, 7 September 2012

Full Name: ATCATTTCC,motif740,CNhs13494,T:486.0(8.40%),B:3892.4(4.91%),P:1e-28

Motif matrix
POACGT
1241.542142.8849.7291.854
210.206127.33295.256253.206
3121.014262.4424.78677.76
4267.78617.496176.90423.814
56.8049.234183.708286.254
635.4780.486107.406342.63
730.1320.486160.38295.002
8187.11284.310.48614.094
90.486332.424139.48213.608

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
Su(H)#MA0085.120.0001426520.06790220.135779ATCATTTCCATCTCGGTTCCCACAA-
Pax5#MA0014.190.001450.6902010.6900269ATCATTTCCCCGCTACGCTTCAGTGCTCT-
nub#MA0453.100.003327831.584050.9444279ATCATTTCCCTAATTTGCATA-
YRR1#MA0439.100.00466282.219490.9444279ATCATTTCCCTTATCTCCGC+
GABPA#MA0062.200.004961482.361670.9444279ATCATTTCCGCCACTTCCGG-
STAT1#MA0137.2-20.007021553.342260.9997477ATCATTTCCCATTTCCCGGAAACC+
YRM1#MA0438.1-30.008573734.08110.9997476ATCATTTCCATTTCCGT-
HNF1A#MA0046.150.00934484.448130.9997479ATCATTTCCGGTTAATAATTAAC+
ELF5#MA0136.1-20.01008144.798760.9997477ATCATTTCCTACTTCCTT+
br_Z4#MA0013.100.01494577.114150.9997479ATCATTTCCTTTGTTTACTA-
THI2#MA0407.160.01509037.1830.9997479ATCATTTCCGTTCTTAGAGTTTCC-
ARO80#MA0273.120.01772338.436280.9997479ATCATTTCCACATACTTGCCGAGAATTATC-
USV1#MA0413.1-20.02066579.836880.9997477ATCATTTCCAAATTCCCCCTGAATTTGTG+
Sox17#MA0078.100.02084629.922780.9997479ATCATTTCCTTCATTGTC+
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