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MacroAPE 1083:CGATCCGGAT,motif767: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!1;161.532;861.504;149.994;108.97!2;125.636;117.944;949.962;88.458!3;880.734;157.686;133.328;110.252!4;105.124;144.866;162.814;869.196!5;112.81...")
 
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06G5;0.0126138!10534-107G3;0.288396!10429-106D6;0.321513!10464-106H5;0.465261!10827-111C8;0.292757!10789-110H6;0.979917!10828-111C9;0.592148!10788-110H5;0.140982!10792-110H9;0.405034!10765-110E9;0.498683!10829-111D1;0.133419!10830-111D2;0.560764!10831-111D3;0.0974468!10832-111D4;0.119553!10833-111D5;0.358308!10764-110E8;0.486612!10770-110F5;0.165128!10399-106A3;0.430086!10400-106A4;0.425629!10405-106A9;0.426567!10834-111D6;0.374286!10835-111D7;0.345378!10836-111D8;0.949124!10837-111D9;0.430037!10699-109G6;0.62618!10802-111A1;0.355647!10796-110I4;0.283279!10010-101C1;0.224239!10810-111A9;0.475966!10421-106C7;0.0480425!10708-109H6;0.375047!12235-129G3;0.079425!12236-129G4;0.589341!12237-129G5;0.0455228!10167-103B5;0.129297!10151-102I7;0.508083!10428-106D5;0.560873!10795-110I3;0.00171281!10805-111A4;0.683254!10052-101G7;0.045886!10189-103D9;0.327725!10589-108D4;0.864705!10425-106D2;0.418915!10427-106D4;0.227039!10702-109G9;0.655631!10432-106D9;0.0236576!10496-107C1;0.091656!10718-109I7;0.739909!10011-101C2;0.471196!10053-101G8;0.350475!10686-109F2;0.698667!10084-102B3;0.242407!10012-101C3;0.591747!10085-102B4;0.475227!10482-107A5;0.990929!10419-106C5;0.315405!10080-102A8;0.0431222!10760-110E4;0.529857!10709-109H7;0.0364392!10710-109H8;0.0607255!10703-109H1;0.941737!10719-109I8;0.896156!10642-109A3;0.0617443!10177-103C6;0.622573!10164-103B2;0.428923!10173-103C2;0.610285!10166-103B4;0.937568!10083-102B2;0.905111!10188-103D8;0.640585!10552-107I3;0.436424!10553-107I4;0.715815!10013-101C4;0.696392!10536-107G5;0.352754!10618-108G6;0.249789!10423-106C9;0.0329229!10785-110H2;0.0375534!12238-129G6;0.38129!12239-129G7;0.557624!12240-129G8;0.471216!10416-106C2;0.837795!10801-110I9;0.478662!10766-110F1;0.618486!10824-111C5;0.431559!10825-111C6;0.849486!10826-111C7;0.841858!10454-106G4;0.830923!10409-106B4;0.809911!10638-108I8;0.341187!10636-108I6;0.0127395!10513-107D9;0.0144553!10420-106C6;0.351862!10082-102B1;0.260919!10014-101C5;0.371817!10070-101I7;0.308618!10452-106G2;0.475683!10453-106G3;0.661156!10449-106F8;0.481878!10042-101F6;0.54897!10069-101I6;0.517086!10193-103E4;0.33272!10631-108I1;0.346162!10438-106E6;0.534972!10488-107B2;0.28564!10196-103E7;0.513254!10071-101I8;0.254097!10071-101I8;0.484694!10041-101F5;0.836007!10451-106G1;0.641167!10450-106F9;0.234676!10604-108F1;0.111869!10605-108F2;0.00563264!10606-108F3;0.00395959!10603-108E9;0.0395693!10497-107C2;0.0729224!10448-106F7;0.0143073!10643-109A4;0.0300044!10426-106D3;0.00265793!10431-106D8;0.164726!10197-103E8;0.14982!10443-106F2;0.20948!10815-111B5;0.397107!10816-111B6;0.937491!10817-111B7;0.850804!10015-101C6;0.948085!10410-106B5;0.426592!10054-101G9;0.418966!10758-110E2;0.368359!10711-109H9;0.213233!10040-101F4;0.0111057!10470-106I2;0.587642!10415-106C1;0.643584!10198-103E9;0.618896!10614-108G2;0.475792!10612-108F9;0.0968401!10549-107H9;0.0533109!10615-108G3;0.342275!10487-107B1;0.76252!10433-106E1;0.449677!10688-109F4;0.0255344!10444-106F3;0.94098!10444-106F3;0.143404!10485-107A8;0.167136!10413-106B8;0.50891!10175-103C4;0.768438!10161-103A8;0.474057!12131-128D7;0.583783!10624-108H3;0.0594895!10712-109I1;0.802922!10205-103F7;0.8139!10206-103F8;0.343488!10207-103F9;0.336145!10050-101G5;0.896299!10051-101G6;0.223584!10016-101C7;0.138697!10046-101G1;0.327796!10778-110G4;0.557814!10633-108I3;0.0960951!10818-111B8;0.0861762!10819-111B9;0.399858!10820-111C1;0.482574!10484-107A7;0.502328!10808-111A7;0.127028!10169-103B7;0.589436!10153-102I9;0.465026!13425-144D5;0.62093!13433-144E4;0.0232048!13437-144E8;0.0216837!11904-125F5;0.0321665!11905-125F6;0.628617!10039-101F3;0.610771!10791-110H8;0.528772!10017-101C8;0.960425!10045-101F9;0.460023!10509-107D5;0.885307!10839-111E2;0.037458!10692-109F8;0.549917!10079-102A7;0.650891!10078-102A6;0.21923!10721-110A1;0.190791!10569-108B2;0.520489!10570-108B3;0.0544301!10571-108B4;0.200543!10647-109A8;0.150367!10752-110D5;0.0261257!10782-110G8;0.376316!10726-110A6;0.0920878!10018-101C9;0.00487595!10086-102B5;0.159385!10182-103D2;0.241835!10165-103B3;0.573644!10499-107C4;0.538646!10408-106B3;0.558048!10019-101D1;0.022188!10068-101I5;0.530546!10075-102A3;0.680078!10077-102A5;0.565062!10727-110A7;0.990137!10775-110G1;0.74981!10412-106B7;0.428254!12231-129F8;0.610002!12232-129F9;0.412037!12233-129G1;0.147125!12234-129G2;0.114896!10414-106B9;0.170171!10170-103B8;0.228208!10183-103D3;0.390097!10150-102I6;0.444813!10174-103C3;0.575091!10155-103A2;0.397232!10038-101F2;0.554151!10838-111E1;0.426052!10759-110E3;0.417896!10514-107E1;0.0365333!10465-106H6;0.875156!10691-109F7;0.412279!10843-111E6;0.107048!10844-111E7;0.442484!11747-123G1;0.984357!11748-123G2;0.564417!11749-123G3;0.190315!11750-123G4;0.332809!11751-123G5;0.450135!11840-124H4;0.084377!11752-123G6;0.0208967!11753-123G7;0.218968!11754-123G8;0.122009!11755-123G9;0.915488!11756-123H1;0.657093!11833-124G6;0.711664!11760-123H5;0.851285!11836-124G9;0.517828!11758-123H3;0.447129!11835-124G8;0.488221!11762-123H7;0.140044!11838-124H2;0.991994!11757-123H2;0.726702!11759-123H4;0.958157!11761-123H6;0.419561!11842-124H6;0.957943!11837-124H1;0.571178!10568-108B1;0.441154!13230-141I8;0.229697!13231-141I9;0.0248171!10696-109G3;0.0416503!10493-107B7;0.503389!10494-107B8;0.303672!10850-111F4;0.258992!10851-111F5;0.251548!10852-111F6;0.464691!10853-111F7;0.611005!10854-111F8;0.932066!10855-111F9;0.406729!10856-111G1;0.495186!10847-111F1;0.389069!10846-111E9;0.404752!10848-111F2;0.0943357!10845-111E8;0.27211!10857-111G2;0.0581106!10858-111G3;0.918582!10156-103A3;0.729592!11901-125F2;0.579323!11902-125F3;0.472381!11903-125F4;0.345113!10689-109F5;0.282105!10648-109A9;0.95677!10784-110H1;0.1168!10744-110C6;0.131152!10772-110F7;0.894759!10474-106I6;0.215187!10600-108E6;0.932349!10684-109E9;0.822794!12226-129F3;0.370918!12227-129F4;0.631198!10508-107D4;0.810415!10539-107G8;0.745773!10607-108F4;0.741966!10555-107I6;0.157631!10774-110F9;0.856559!10637-108I7;0.186094!10663-109C6;0.18368!10728-110A8;0.210069!10729-110A9;0.0170621!10430-106D7;0.0523048!10730-110B1;0.362121!10813-111B3;0.449586!10812-111B2;0.180809!10037-101F1;0.411709!10172-103C1;0.532758!10163-103B1;0.556518!10076-102A4;0.670001!10073-102A1;0.473412!10036-101E9;0.894414!10195-103E6;0.50116!10277-104E7;0.543896!10434-106E2;0.746711!10550-107I1;0.111002!10545-107H5;0.0532024!10544-107H4;0.396418!10704-109H2;0.172668!10510-107D6;0.419792!10558-107I9;0.0184913!10020-101D2;0.794037!10732-110B3;0.246077!10049-101G4;0.308875!10698-109G5;0.751974!10437-106E5;0.149121!10417-106C3;0.632832!10035-101E8;0.110369!10171-103B9;0.518511!10157-103A4;0.493612!10034-101E7;0.577375!10072-101I9;0.51227!10199-103F1;0.898709!10200-103F2;0.669666!10697-109G4;0.269388!10723-110A3;0.815296!10179-103C8;0.104059!10160-103A7;0.375711!10180-103C9;0.648787!10162-103A9;0.610526!10021-101D3;0.677046!10840-111E3;0.568691!10706-109H4;0.466455!10033-101E6;0.567176!10032-101E5;0.524737!10490-107B4;0.472628!10439-106E7;0.110137!10022-101D4;0.0120742!10176-103C5;0.437454!10469-106I1;0.563219!10067-101I4;0.336379!10411-106B6;0.739109!10471-106I3;0.364225!10030-101E3;0.707653!10475-106I7;0.637412!10787-110H4;0.211131!10477-106I9;0.39344!10695-109G2;0.458935!11771-123I7;0.569491!11772-123I8;0.579053!11773-123I9;0.17992!10093-102C3;0.434865!10442-106F1;0.659956!10442-106F1;0.413519!10201-103F3;0.410658!10639-108I9;0.103621!11843-124H7;0.64793!11841-124H5;0.127153!10693-109F9;0.0354729!10436-106E4;0.00651795!10483-107A6;0.490812!10282-104F3;0.11667!10023-101D5;0.0769491!10066-101I3;0.0901592!10065-101I2;0.424302!10800-110I8;0.307241!10610-108F7;0.800877!10841-111E4;0.00231068!10541-107H1;0.726311!10842-111E5;0.433616!10562-108A4;0.540929!10024-101D6;0.181611!10064-101I1;0.355756!10609-108F6;0.549898!10048-101G3;0.193894!10781-110G7;0.555365!10181-103D1;0.241575!10159-103A6;0.356634!10056-101H2;0.486219!10737-110B8;0.592961!10025-101D7;0.10396!10044-101F8;0.630571!10424-106D1;0.806!10463-106H4;0.343871!10616-108G4;0.341726!10486-107A9;0.347775!10062-101H8;0.169954!10202-103F4;0.737608!10158-103A5;0.780697!10441-106E9;0.52728!10031-101E4;0.0416068!10063-101H9;0.488279!10063-101H9;0.83661!11763-123H8;0.629619!11765-123I1;0.226341!11768-123I4;0.197758!10807-111A6;0.127507!10790-110H7;9.09199e-05!10798-110I6;0.0498828!10786-110H3;0.293515!10591-108D6;0.0978304!10593-108D8;0.0343428!10590-108D5;0.0964788!10026-101D8;0.0454223!10096-102C6;0.218855!10168-103B6;0.802867!10154-103A1;0.445327!10209-103G2;0.52843!10061-101H7;0.302234!10027-101D9;0.465197!10043-101F7;0.256254!10783-110G9;0.632845!10028-101E1;0.147206!10060-101H6;0.198273!10203-103F5;0.222357!10059-101H5;0.210398!10047-101G2;0.292666!10029-101E2;0.650818!10058-101H4;0.542446!10418-106C4;0.39019!10492-107B6;0.0180216!10694-109G1;0.29672!10797-110I5;0.482906!10057-101H3;0.135048!10100-102D1;0.316895!10055-101H1;0.482951!10204-103F6;0.552473!10191-103E2;0.705026!10563-108A5;0.431198
|name=CGATCCGGAT,motif767,CNhs11762,T:1282.0(30.00%),B:15694.5(22.60%),P:1e-28
|name=CGATCCGGAT,motif767,CNhs11762,T:1282.0(30.00%),B:15694.5(22.60%),P:1e-28
|tomtom_result=ECM22#MA0292.1;-2;0.000368638;0.175472;0.142253;7;CGATCCGGAT;CTCCGGA;+!ASH1#MA0276.1;2;0.00045221;0.215252;0.142253;8;CGATCCGGAT;CCCGATCCGG;-!ASG1#MA0275.1;-4;0.00118896;0.565946;0.170519;6;CGATCCGGAT;CCGGAA;+!YER184C#MA0424.1;-2;0.00120479;0.573478;0.170519;8;CGATCCGGAT;TTCCGGAG;-!YJL103C#MA0427.1;0;0.00210028;0.999734;0.211286;10;CGATCCGGAT;AGCTCCGGAGA;+!CAT8#MA0280.1;-2;0.00212083;1.00951;0.211286;6;CGATCCGGAT;TTCCGG;-!SIP4#MA0380.1;-2;0.00297183;1.41459;0.245707;7;CGATCCGGAT;CTCCGGA;+!ELK1#MA0028.1;-1;0.00489816;2.33153;0.355576;9;CGATCCGGAT;GAGCCGGAAG;+!ARR10#MA0121.1;0;0.00817246;3.89009;0.475102;8;CGATCCGGAT;AGATCCGC;+!TBS1#MA0404.1;1;0.00817246;3.89009;0.475102;7;CGATCCGGAT;CGGATCCG;+!OPI1#MA0349.1;0;0.00855841;4.0738;0.475102;7;CGATCCGGAT;CGAACCG;+!YBR239C#MA0420.1;-1;0.0154486;7.35353;0.767323;8;CGATCCGGAT;GTTCCGGT;-!HAP4#MA0315.1;1;0.0184839;8.79832;0.872179;10;CGATCCGGAT;TCGCCTCTGATTGGT;-!RDR1#MA0360.1;-1;0.0199611;9.50147;0.896064;8;CGATCCGGAT;GTTCCGCA;-!AFT1#MA0269.1;0;0.0210023;9.99711;0.896064;10;CGATCCGGAT;CCAATCGGGTGCAATATGTAA;-
}}
}}

Latest revision as of 14:29, 7 September 2012

Full Name: CGATCCGGAT,motif767,CNhs11762,T:1282.0(30.00%),B:15694.5(22.60%),P:1e-28

Motif matrix
POACGT
1161.532861.504149.994108.97
2125.636117.944949.96288.458
3880.734157.686133.328110.252
4105.124144.866162.814869.196
5112.816925.604133.328110.252
6121.79905.092133.328121.79
7112.816146.148911.502111.534
8108.97164.096911.50297.432
9873.042152.558117.944138.456
10125.636138.456130.764887.144

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
ECM22#MA0292.1-20.0003686380.1754720.1422537CGATCCGGATCTCCGGA+
ASH1#MA0276.120.000452210.2152520.1422538CGATCCGGATCCCGATCCGG-
ASG1#MA0275.1-40.001188960.5659460.1705196CGATCCGGATCCGGAA+
YER184C#MA0424.1-20.001204790.5734780.1705198CGATCCGGATTTCCGGAG-
YJL103C#MA0427.100.002100280.9997340.21128610CGATCCGGATAGCTCCGGAGA+
CAT8#MA0280.1-20.002120831.009510.2112866CGATCCGGATTTCCGG-
SIP4#MA0380.1-20.002971831.414590.2457077CGATCCGGATCTCCGGA+
ELK1#MA0028.1-10.004898162.331530.3555769CGATCCGGATGAGCCGGAAG+
ARR10#MA0121.100.008172463.890090.4751028CGATCCGGATAGATCCGC+
TBS1#MA0404.110.008172463.890090.4751027CGATCCGGATCGGATCCG+
OPI1#MA0349.100.008558414.07380.4751027CGATCCGGATCGAACCG+
YBR239C#MA0420.1-10.01544867.353530.7673238CGATCCGGATGTTCCGGT-
HAP4#MA0315.110.01848398.798320.87217910CGATCCGGATTCGCCTCTGATTGGT-
RDR1#MA0360.1-10.01996119.501470.8960648CGATCCGGATGTTCCGCA-
AFT1#MA0269.100.02100239.997110.89606410CGATCCGGATCCAATCGGGTGCAATATGTAA-
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