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MacroAPE 1083:CCGCCAATYC,motif849: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!1;25.488;754.256;78.352;85.904!2;108.56;545.632;208.624;81.184!3;64.192;170.864;636.256;72.688!4;176.528;484.272;246.384;36.816!5;178.416;724....")
 
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5;0.0216938!10534-107G3;0.0499437!10429-106D6;0.0510552!10464-106H5;0.033008!10827-111C8;0.107272!10789-110H6;0.274388!10828-111C9;0.450897!10788-110H5;0.506247!10792-110H9;0.286577!10765-110E9;0.276873!10829-111D1;0.111292!10830-111D2;0.229232!10831-111D3;0.209406!10832-111D4;0.0616004!10833-111D5;0.0970417!10764-110E8;0.102148!10770-110F5;0.249091!10399-106A3;0.161888!10400-106A4;0.0181312!10405-106A9;0.0339405!10834-111D6;0.0284949!10835-111D7;0.132939!10836-111D8;0.0552374!10837-111D9;0.0834843!10699-109G6;0.140408!10802-111A1;0.070387!10796-110I4;0.0942566!10010-101C1;0.0277515!10810-111A9;0.018012!10421-106C7;0.00752434!10708-109H6;0.0841004!12235-129G3;0.0355602!12236-129G4;0.494372!12237-129G5;0.741862!10167-103B5;0.248928!10151-102I7;0.245931!10428-106D5;0.225806!10795-110I3;0.264728!10805-111A4;0.0665518!10052-101G7;0.00946068!10189-103D9;0.142649!10589-108D4;0.150988!10425-106D2;0.0673675!10427-106D4;0.0668746!10702-109G9;0.0515719!10432-106D9;0.0525246!10496-107C1;0.0236418!10718-109I7;0.0329074!10011-101C2;0.117064!10053-101G8;0.138094!10686-109F2;0.227866!10084-102B3;0.894098!10012-101C3;0.161897!10085-102B4;0.147919!10482-107A5;0.130949!10419-106C5;0.0307831!10080-102A8;0.0121406!10760-110E4;0.0482749!10709-109H7;0.0125083!10710-109H8;0.0130269!10703-109H1;0.0346588!10719-109I8;0.0571253!10642-109A3;0.143601!10177-103C6;0.0314201!10164-103B2;0.229073!10173-103C2;0.242983!10166-103B4;0.815475!10083-102B2;0.58876!10188-103D8;0.404549!10552-107I3;0.0626586!10553-107I4;0.128892!10013-101C4;0.0117453!10536-107G5;0.113923!10618-108G6;0.7088!10423-106C9;0.130017!10785-110H2;0.0468813!12238-129G6;0.281317!12239-129G7;0.798344!12240-129G8;0.240795!10416-106C2;0.436448!10801-110I9;0.118765!10766-110F1;0.324995!10824-111C5;0.14299!10825-111C6;0.0661324!10826-111C7;0.0475398!10454-106G4;0.0488621!10409-106B4;0.0511537!10638-108I8;0.043938!10636-108I6;0.0108497!10513-107D9;0.000371899!10420-106C6;0.00370382!10082-102B1;0.0502848!10014-101C5;0.207429!10070-101I7;0.0415577!10452-106G2;0.0449325!10453-106G3;0.00835315!10449-106F8;0.00982273!10042-101F6;0.0100298!10069-101I6;0.343251!10193-103E4;0.109229!10631-108I1;0.316902!10438-106E6;0.0698352!10488-107B2;0.0678605!10196-103E7;0.12903!10071-101I8;0.32041!10071-101I8;0.170021!10041-101F5;0.209686!10451-106G1;0.0357658!10450-106F9;0.112998!10604-108F1;0.0743029!10605-108F2;0.397672!10606-108F3;0.750282!10603-108E9;0.539966!10497-107C2;0.349043!10448-106F7;0.00444458!10643-109A4;0.016404!10426-106D3;0.000240392!10431-106D8;0.0873884!10197-103E8;0.0186819!10443-106F2;0.0263433!10815-111B5;0.0231104!10816-111B6;0.0434068!10817-111B7;0.0588316!10015-101C6;0.0492425!10410-106B5;0.189047!10054-101G9;0.0703183!10758-110E2;0.106832!10711-109H9;0.103102!10040-101F4;0.0201246!10470-106I2;0.150888!10415-106C1;0.0263512!10198-103E9;0.0921312!10614-108G2;0.132521!10612-108F9;0.215639!10549-107H9;0.0715799!10615-108G3;0.00911615!10487-107B1;0.0925362!10433-106E1;0.114009!10688-109F4;0.0887939!10444-106F3;0.193167!10444-106F3;0.000533652!10485-107A8;0.00168967!10413-106B8;0.00441952!10175-103C4;0.110939!10161-103A8;0.349472!12131-128D7;0.479234!10624-108H3;0.729942!10712-109I1;0.527885!10205-103F7;0.0645783!10206-103F8;0.134451!10207-103F9;0.216244!10050-101G5;0.141089!10051-101G6;0.431339!10016-101C7;0.182683!10046-101G1;0.127571!10778-110G4;0.690694!10633-108I3;0.279697!10818-111B8;0.0494187!10819-111B9;0.00728704!10820-111C1;0.00950655!10484-107A7;0.00642595!10808-111A7;0.0439678!10169-103B7;0.0304355!10153-102I9;0.113598!13425-144D5;0.213421!13433-144E4;8.46908e-05!13437-144E8;0.000245704!11904-125F5;0.000424277!11905-125F6;0.743918!10039-101F3;0.147928!10791-110H8;0.128081!10017-101C8;0.0281261!10045-101F9;0.0761234!10509-107D5;0.135967!10839-111E2;0.20459!10692-109F8;0.0606666!10079-102A7;0.0909624!10078-102A6;0.190266!10721-110A1;0.0961772!10569-108B2;0.0794103!10570-108B3;0.235747!10571-108B4;0.206416!10647-109A8;0.474103!10752-110D5;0.125742!10782-110G8;0.0893362!10726-110A6;0.97593!10018-101C9;0.213894!10086-102B5;0.286382!10182-103D2;0.826768!10165-103B3;0.340417!10499-107C4;0.339422!10408-106B3;0.0889013!10019-101D1;0.0326519!10068-101I5;0.0420204!10075-102A3;0.249215!10077-102A5;0.0490998!10727-110A7;0.0229708!10775-110G1;0.0554736!10412-106B7;0.0232416!12231-129F8;0.0220142!12232-129F9;0.274763!12233-129G1;0.08701!12234-129G2;0.155863!10414-106B9;0.410242!10170-103B8;0.000792891!10183-103D3;0.210312!10150-102I6;0.224852!10174-103C3;0.194922!10155-103A2;0.307436!10038-101F2;0.305508!10838-111E1;0.195136!10759-110E3;0.0312904!10514-107E1;0.000322159!10465-106H6;0.0269397!10691-109F7;0.217893!10843-111E6;0.0877314!10844-111E7;0.00345941!11747-123G1;0.044202!11748-123G2;0.245655!11749-123G3;0.356754!11750-123G4;0.0331574!11751-123G5;0.247384!11840-124H4;0.169112!11752-123G6;0.0483743!11753-123G7;0.0942955!11754-123G8;0.0454239!11755-123G9;0.223828!11756-123H1;0.474191!11833-124G6;0.34997!11760-123H5;0.046364!11836-124G9;0.117549!11758-123H3;0.0898155!11835-124G8;0.111201!11762-123H7;0.0295969!11838-124H2;0.182691!11757-123H2;0.147094!11759-123H4;0.81462!11761-123H6;0.120799!11842-124H6;0.170493!11837-124H1;0.0976448!10568-108B1;0.0453086!13230-141I8;0.156813!13231-141I9;0.175321!10696-109G3;0.141951!10493-107B7;0.798125!10494-107B8;0.238938!10850-111F4;0.000883913!10851-111F5;0.215868!10852-111F6;0.204382!10853-111F7;0.149841!10854-111F8;0.126661!10855-111F9;0.080908!10856-111G1;0.77306!10847-111F1;0.0232407!10846-111E9;0.0184965!10848-111F2;0.00894034!10845-111E8;0.183159!10857-111G2;0.00418863!10858-111G3;3.36281e-05!10156-103A3;0.40872!11901-125F2;0.237857!11902-125F3;0.0216716!11903-125F4;0.163142!10689-109F5;0.0243654!10648-109A9;0.425692!10784-110H1;0.132312!10744-110C6;0.0367216!10772-110F7;0.25589!10474-106I6;0.0995771!10600-108E6;0.220667!10684-109E9;0.0415162!12226-129F3;0.705872!12227-129F4;0.289743!10508-107D4;0.231242!10539-107G8;0.00836214!10607-108F4;0.00231829!10555-107I6;0.241001!10774-110F9;0.015554!10637-108I7;0.116264!10663-109C6;0.197011!10728-110A8;0.651743!10729-110A9;0.316097!10430-106D7;0.193197!10730-110B1;0.119356!10813-111B3;0.0646752!10812-111B2;0.641327!10037-101F1;0.894371!10172-103C1;0.150683!10163-103B1;0.328675!10076-102A4;0.238863!10073-102A1;0.0903592!10036-101E9;0.301122!10195-103E6;0.0736642!10277-104E7;0.139599!10434-106E2;0.621272!10550-107I1;0.0014829!10545-107H5;0.0943873!10544-107H4;0.000105088!10704-109H2;0.0796044!10510-107D6;0.710675!10558-107I9;0.268753!10020-101D2;0.0400318!10732-110B3;0.091817!10049-101G4;0.622947!10698-109G5;0.361235!10437-106E5;0.0781569!10417-106C3;0.0247252!10035-101E8;0.147274!10171-103B9;0.120217!10157-103A4;0.260736!10034-101E7;0.199122!10072-101I9;0.133115!10199-103F1;0.392201!10200-103F2;0.106158!10697-109G4;0.151667!10723-110A3;0.949716!10179-103C8;0.0182462!10160-103A7;0.221766!10180-103C9;0.546464!10162-103A9;0.571699!10021-101D3;0.673195!10840-111E3;0.0689073!10706-109H4;0.175351!10033-101E6;0.486609!10032-101E5;0.296846!10490-107B4;0.100816!10439-106E7;0.0544909!10022-101D4;0.00256606!10176-103C5;0.111215!10469-106I1;0.276556!10067-101I4;0.0455343!10411-106B6;0.271806!10471-106I3;0.0160727!10030-101E3;0.48731!10475-106I7;0.0848054!10787-110H4;0.0285101!10477-106I9;0.00502932!10695-109G2;0.0275296!11771-123I7;0.328441!11772-123I8;0.169723!11773-123I9;0.751742!10093-102C3;0.815407!10442-106F1;0.0414891!10442-106F1;0.00556178!10201-103F3;0.0194574!10639-108I9;0.20384!11843-124H7;0.0578246!11841-124H5;0.36795!10693-109F9;0.256457!10436-106E4;0.0068864!10483-107A6;0.0110692!10282-104F3;0.0059036!10023-101D5;0.106296!10066-101I3;0.0205361!10065-101I2;0.0480089!10800-110I8;0.224368!10610-108F7;0.0147723!10841-111E4;0.00551961!10541-107H1;0.0400526!10842-111E5;0.00158165!10562-108A4;0.0954389!10024-101D6;0.0767559!10064-101I1;0.0716683!10609-108F6;0.29928!10048-101G3;0.00354948!10781-110G7;0.377815!10181-103D1;0.305578!10159-103A6;0.481452!10056-101H2;0.55323!10737-110B8;0.132053!10025-101D7;0.357906!10044-101F8;0.02869!10424-106D1;0.0829793!10463-106H4;0.08874!10616-108G4;0.0911234!10486-107A9;0.21436!10062-101H8;0.0177569!10202-103F4;0.576639!10158-103A5;0.0443176!10441-106E9;0.635723!10031-101E4;0.0172654!10063-101H9;0.0652976!10063-101H9;0.261526!11763-123H8;0.0972226!11765-123I1;0.208801!11768-123I4;0.123841!10807-111A6;0.0737884!10790-110H7;3.57999e-06!10798-110I6;7.80751e-06!10786-110H3;0.0267537!10591-108D6;1.01859e-05!10593-108D8;0.00014686!10590-108D5;0.0698203!10026-101D8;0.00299292!10096-102C6;0.0332684!10168-103B6;0.750857!10154-103A1;0.439411!10209-103G2;0.456999!10061-101H7;0.0769098!10027-101D9;0.247742!10043-101F7;0.138002!10783-110G9;0.707051!10028-101E1;0.910847!10060-101H6;0.0171227!10203-103F5;0.156519!10059-101H5;0.171027!10047-101G2;0.320329!10029-101E2;0.129389!10058-101H4;0.0974383!10418-106C4;0.229617!10492-107B6;0.0167302!10694-109G1;0.0892707!10797-110I5;0.613434!10057-101H3;0.63955!10100-102D1;0.231448!10055-101H1;0.128922!10204-103F6;0.395023!10191-103E2;0.146569!10563-108A5;0.024574
|name=CCGCCAATYC,motif849,CNhs12065,T:944.0(32.86%),B:17115.1(23.75%),P:1e-27
|name=CCGCCAATYC,motif849,CNhs12065,T:944.0(32.86%),B:17115.1(23.75%),P:1e-27
|tomtom_result=NFYA#MA0060.1;2;0.0114354;5.44325;1;10;CCGCCAATCC;CTCAGCCAATCAGCGC;+!NFIC#MA0161.1;-1;0.0132452;6.30472;1;6;CCGCCAATCC;TGCCAA;-!YLL054C#MA0429.1;0;0.014122;6.72206;1;7;CCGCCAATCC;CGGCCGA;+!STP2#MA0395.1;10;0.0150997;7.18746;1;10;CCGCCAATCC;TCGTCGTGCGGCGCCGATCA;-!YGR067C#MA0425.1;3;0.0170481;8.1149;1;10;CCGCCAATCC;ACCCCACTTTTTTG;+!Pax4#MA0068.1;9;0.0189996;9.04379;1;10;CCGCCAATCC;GAAAAATTTCCCATACTCCACTCCCCCCCC;+
}}
}}

Latest revision as of 14:30, 7 September 2012

Full Name: CCGCCAATYC,motif849,CNhs12065,T:944.0(32.86%),B:17115.1(23.75%),P:1e-27

Motif matrix
POACGT
125.488754.25678.35285.904
2108.56545.632208.62481.184
364.192170.864636.25672.688
4176.528484.272246.38436.816
5178.416724.04816.99224.544
6657.96878.352153.87253.808
7549.40834.92862.304297.36
855.69644.368104.784739.152
967.968349.28201.072326.624
1084.96728.76817.936112.336

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
NFYA#MA0060.120.01143545.44325110CCGCCAATCCCTCAGCCAATCAGCGC+
NFIC#MA0161.1-10.01324526.3047216CCGCCAATCCTGCCAA-
YLL054C#MA0429.100.0141226.7220617CCGCCAATCCCGGCCGA+
STP2#MA0395.1100.01509977.18746110CCGCCAATCCTCGTCGTGCGGCGCCGATCA-
YGR067C#MA0425.130.01704818.1149110CCGCCAATCCACCCCACTTTTTTG+
Pax4#MA0068.190.01899969.04379110CCGCCAATCCGAAAAATTTCCCATACTCCACTCCCCCCCC+
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