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MacroAPE 1083:8-HTTTGCGC: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!1;238.952;372.232;0.952;339.864!2;0.952;0.952;0.952;949.144!3;218.008;0.952;0.952;732.088!4;233.24;0.952;0.952;716.856!5;0.952;325.584;478.856...")
 
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25!10464-106H5;0.148869!10827-111C8;0.332423!10789-110H6;0.267083!10828-111C9;0.106128!10788-110H5;0.572869!10792-110H9;0.127351!10765-110E9;0.193771!10829-111D1;0.118897!10830-111D2;0.198318!10831-111D3;0.0257655!10832-111D4;0.0520911!10833-111D5;0.0742717!10764-110E8;0.144848!10770-110F5;0.196629!10399-106A3;0.440644!10400-106A4;0.18656!10405-106A9;0.199145!10834-111D6;0.26703!10835-111D7;0.265731!10836-111D8;0.101374!10837-111D9;0.306254!10699-109G6;0.418409!10802-111A1;0.0124316!10796-110I4;0.407306!10010-101C1;0.0797499!10810-111A9;0.0450791!10421-106C7;0.178543!10708-109H6;0.0263081!12235-129G3;0.271628!12236-129G4;0.590033!12237-129G5;0.902547!10167-103B5;0.852804!10151-102I7;0.0673001!10428-106D5;0.0624511!10795-110I3;0.74376!10805-111A4;0.0485786!10052-101G7;0.412079!10189-103D9;0.0644457!10589-108D4;0.0278468!10425-106D2;0.439778!10427-106D4;0.218175!10702-109G9;0.246689!10432-106D9;0.726217!10496-107C1;0.0618424!10718-109I7;0.331647!10011-101C2;0.0783083!10053-101G8;0.0302523!10686-109F2;0.341497!10084-102B3;0.425369!10012-101C3;0.0208851!10085-102B4;0.0611444!10482-107A5;0.0199989!10419-106C5;0.172714!10080-102A8;0.30397!10760-110E4;0.0764037!10709-109H7;0.1713!10710-109H8;0.149988!10703-109H1;0.260772!10719-109I8;0.73764!10642-109A3;0.782613!10177-103C6;0.801635!10164-103B2;0.0318865!10173-103C2;0.0404423!10166-103B4;0.0903895!10083-102B2;0.0701964!10188-103D8;0.0465261!10552-107I3;0.0610651!10553-107I4;0.251248!10013-101C4;0.270819!10536-107G5;0.0564961!10618-108G6;0.928763!10423-106C9;0.323501!10785-110H2;0.223361!12238-129G6;0.835209!12239-129G7;0.357988!12240-129G8;0.903481!10416-106C2;0.49761!10801-110I9;0.309062!10766-110F1;0.0268465!10824-111C5;0.199915!10825-111C6;0.0918113!10826-111C7;0.133973!10454-106G4;0.12594!10409-106B4;0.0699807!10638-108I8;0.0901142!10636-108I6;0.130306!10513-107D9;0.215496!10420-106C6;0.228466!10082-102B1;0.756926!10014-101C5;0.0300913!10070-101I7;0.0248397!10452-106G2;0.0353352!10453-106G3;0.254921!10449-106F8;0.332626!10042-101F6;0.33694!10069-101I6;0.0785822!10193-103E4;0.0574798!10631-108I1;0.0567809!10438-106E6;0.255189!10488-107B2;0.315215!10196-103E7;0.248416!10071-101I8;0.0319492!10071-101I8;0.0621295!10041-101F5;0.056446!10451-106G1;0.164449!10450-106F9;0.218286!10604-108F1;0.382397!10605-108F2;0.181428!10606-108F3;0.145191!10603-108E9;0.133871!10497-107C2;0.111849!10448-106F7;0.0601246!10643-109A4;0.720146!10426-106D3;0.243957!10431-106D8;0.0821155!10197-103E8;0.10616!10443-106F2;0.0112747!10815-111B5;0.242205!10816-111B6;0.117136!10817-111B7;0.08362!10015-101C6;0.120325!10410-106B5;0.103998!10054-101G9;0.540247!10758-110E2;0.0390891!10711-109H9;0.160641!10040-101F4;0.024204!10470-106I2;0.0551485!10415-106C1;0.269665!10198-103E9;0.296469!10614-108G2;0.0827156!10612-108F9;0.0473375!10549-107H9;0.115128!10615-108G3;0.612373!10487-107B1;0.853265!10433-106E1;0.0905102!10688-109F4;0.237505!10444-106F3;0.172538!10444-106F3;0.672131!10485-107A8;0.822328!10413-106B8;0.765464!10175-103C4;0.555743!10161-103A8;0.0516945!12131-128D7;0.110943!10624-108H3;0.224502!10712-109I1;0.267004!10205-103F7;0.18032!10206-103F8;0.0463841!10207-103F9;0.0300093!10050-101G5;0.154905!10051-101G6;0.107585!10016-101C7;0.035223!10046-101G1;0.0353224!10778-110G4;0.061831!10633-108I3;0.607093!10818-111B8;0.353908!10819-111B9;0.140771!10820-111C1;0.128843!10484-107A7;0.123846!10808-111A7;0.317307!10169-103B7;0.180123!10153-102I9;0.0542291!13425-144D5;0.0621699!13433-144E4;0.136344!13437-144E8;0.0991319!11904-125F5;0.0693843!11905-125F6;0.534172!10039-101F3;0.223998!10791-110H8;0.0449815!10017-101C8;0.102787!10045-101F9;0.00726245!10509-107D5;0.0275442!10839-111E2;0.137447!10692-109F8;0.525577!10079-102A7;0.0843677!10078-102A6;0.0528505!10721-110A1;0.0537939!10569-108B2;0.134085!10570-108B3;0.0169568!10571-108B4;0.139466!10647-109A8;0.24567!10752-110D5;0.0867379!10782-110G8;0.0508297!10726-110A6;0.757993!10018-101C9;0.18173!10086-102B5;0.107143!10182-103D2;0.823906!10165-103B3;0.0839308!10499-107C4;0.0820672!10408-106B3;0.267705!10019-101D1;0.0793918!10068-101I5;0.0834189!10075-102A3;0.0360242!10077-102A5;0.0348859!10727-110A7;0.380505!10775-110G1;0.065817!10412-106B7;0.365575!12231-129F8;0.429368!12232-129F9;0.00856675!12233-129G1;0.00461913!12234-129G2;0.000714506!10414-106B9;0.00293876!10170-103B8;0.199284!10183-103D3;0.0549962!10150-102I6;0.0543628!10174-103C3;0.0557243!10155-103A2;0.0657539!10038-101F2;0.0608377!10838-111E1;0.0521798!10759-110E3;0.595888!10514-107E1;0.0455461!10465-106H6;0.336328!10691-109F7;0.939382!10843-111E6;0.188193!10844-111E7;0.893039!11747-123G1;0.262728!11748-123G2;0.18856!11749-123G3;0.792012!11750-123G4;0.736352!11751-123G5;0.104071!11840-124H4;0.264322!11752-123G6;0.0583191!11753-123G7;0.655286!11754-123G8;0.972738!11755-123G9;0.0480471!11756-123H1;0.00726476!11833-124G6;0.0756048!11760-123H5;0.425967!11836-124G9;0.212468!11758-123H3;0.911776!11835-124G8;0.536739!11762-123H7;0.27348!11838-124H2;0.778323!11757-123H2;0.288837!11759-123H4;0.381648!11761-123H6;0.673638!11842-124H6;0.224067!11837-124H1;0.985652!10568-108B1;0.285142!13230-141I8;0.494348!13231-141I9;0.171284!10696-109G3;0.134619!10493-107B7;0.958886!10494-107B8;0.394478!10850-111F4;0.369735!10851-111F5;0.425985!10852-111F6;0.791493!10853-111F7;0.636764!10854-111F8;0.208257!10855-111F9;0.60363!10856-111G1;0.516491!10847-111F1;0.907805!10846-111E9;0.941881!10848-111F2;0.194721!10845-111E8;0.281371!10857-111G2;0.226459!10858-111G3;0.372674!10156-103A3;0.712508!11901-125F2;0.0605169!11902-125F3;0.140463!11903-125F4;0.361289!10689-109F5;0.401402!10648-109A9;0.367011!10784-110H1;0.242444!10744-110C6;0.110983!10772-110F7;0.369768!10474-106I6;0.212311!10600-108E6;0.14042!10684-109E9;0.157295!12226-129F3;0.797676!12227-129F4;0.257477!10508-107D4;0.359225!10539-107G8;0.340356!10607-108F4;0.191435!10555-107I6;0.474428!10774-110F9;0.777804!10637-108I7;0.153872!10663-109C6;0.940277!10728-110A8;0.809392!10729-110A9;0.457707!10430-106D7;0.915951!10730-110B1;0.076599!10813-111B3;0.331588!10812-111B2;0.369897!10037-101F1;0.240955!10172-103C1;0.0442665!10163-103B1;0.0249517!10076-102A4;0.0714192!10073-102A1;0.0450673!10036-101E9;0.0442408!10195-103E6;0.0440114!10277-104E7;0.056951!10434-106E2;0.0942307!10550-107I1;0.414081!10545-107H5;0.30822!10544-107H4;0.097587!10704-109H2;0.110792!10510-107D6;0.331311!10558-107I9;0.124288!10020-101D2;0.989588!10732-110B3;0.02606!10049-101G4;0.31989!10698-109G5;0.297923!10437-106E5;0.286445!10417-106C3;0.335631!10035-101E8;0.27283!10171-103B9;0.0514468!10157-103A4;0.0520927!10034-101E7;0.0539089!10072-101I9;0.0508413!10199-103F1;0.043044!10200-103F2;0.0999632!10697-109G4;0.0405547!10723-110A3;0.821454!10179-103C8;0.206113!10160-103A7;0.029439!10180-103C9;0.0479653!10162-103A9;0.0349271!10021-101D3;0.0398558!10840-111E3;0.506428!10706-109H4;0.222859!10033-101E6;0.11484!10032-101E5;0.0663372!10490-107B4;0.0492744!10439-106E7;0.107517!10022-101D4;0.388805!10176-103C5;0.017214!10469-106I1;0.0458675!10067-101I4;0.34012!10411-106B6;0.0679645!10471-106I3;0.563244!10030-101E3;0.587765!10475-106I7;0.0235827!10787-110H4;0.420098!10477-106I9;0.152321!10695-109G2;0.0981149!11771-123I7;0.418576!11772-123I8;0.0645973!11773-123I9;0.444862!10093-102C3;0.726394!10442-106F1;0.0554224!10442-106F1;0.334199!10201-103F3;0.3263!10639-108I9;0.0142126!11843-124H7;0.167639!11841-124H5;0.762154!10693-109F9;0.424481!10436-106E4;0.250104!10483-107A6;0.185016!10282-104F3;0.0304886!10023-101D5;0.0121688!10066-101I3;0.0485829!10065-101I2;0.0740308!10800-110I8;0.100078!10610-108F7;0.670845!10841-111E4;0.511977!10541-107H1;0.347773!10842-111E5;0.323762!10562-108A4;0.989518!10024-101D6;0.952466!10064-101I1;0.0271057!10609-108F6;0.0243058!10048-101G3;0.788014!10781-110G7;0.0159309!10181-103D1;0.620588!10159-103A6;0.0925808!10056-101H2;0.0966826!10737-110B8;0.0697587!10025-101D7;0.697759!10044-101F8;0.596474!10424-106D1;0.259224!10463-106H4;0.32935!10616-108G4;0.127036!10486-107A9;0.108723!10062-101H8;0.435888!10202-103F4;0.137534!10158-103A5;0.189188!10441-106E9;0.108696!10031-101E4;0.845241!10063-101H9;0.0538153!10063-101H9;0.0513789!11763-123H8;0.0457824!11765-123I1;0.327477!11768-123I4;0.143427!10807-111A6;0.176525!10790-110H7;0.11437!10798-110I6;0.483434!10786-110H3;0.0687192!10591-108D6;0.101925!10593-108D8;0.324532!10590-108D5;0.274357!10026-101D8;0.228597!10096-102C6;0.00316502!10168-103B6;0.0341632!10154-103A1;0.0627672!10209-103G2;0.0809391!10061-101H7;0.0590279!10027-101D9;0.071053!10043-101F7;0.516726!10783-110G9;0.469741!10028-101E1;0.0801774!10060-101H6;0.0102184!10203-103F5;0.0476068!10059-101H5;0.0809092!10047-101G2;0.11224!10029-101E2;0.189727!10058-101H4;0.103159!10418-106C4;0.0862766!10492-107B6;0.208469!10694-109G1;0.318829!10797-110I5;0.532653!10057-101H3;0.223944!10100-102D1;0.0711369!10055-101H1;0.0175842!10204-103F6;0.0350698!10191-103E2;0.0551478!10563-108A5;0.126794
|name=8-HTTTGCGC,CNhs13237,BestGuess:E2F1..5.p2.SwissRegulon.nucfreq(0.741183613392624),T:952.0(34.15%),B:10046.4(22.81%),P:1e-41
|name=8-HTTTGCGC,CNhs13237,BestGuess:E2F1..5.p2.SwissRegulon.nucfreq(0.741183613392624),T:952.0(34.15%),B:10046.4(22.81%),P:1e-41
|tomtom_result=YRM1#MA0438.1;0;0.00120493;0.573549;0.626477;8;CTTTGCGC;ATTTCCGT;-!DAL82#MA0291.1;1;0.00132101;0.628799;0.626477;8;CTTTGCGC;AATGTGCGC;+!RDR1#MA0360.1;-1;0.00362173;1.72394;0.678015;7;CTTTGCGC;GTTCCGCA;-!id1#MA0120.1;5;0.00425582;2.02577;0.678015;7;CTTTGCGC;TTTTCCTTTTCG;+!FHL1#MA0295.1;-1;0.00439014;2.08971;0.678015;7;CTTTGCGC;TTTGCGTC;-!E2F1#MA0024.1;0;0.00530484;2.5251;0.678015;8;CTTTGCGC;TTTGGCGC;+!RGT1#MA0367.1;3;0.00568816;2.70756;0.678015;8;CTTTGCGC;AATTTTTCCGG;+!CUP2#MA0287.1;1;0.00606653;2.88767;0.678015;8;CTTTGCGC;CATTTCTGCTG;-!YRR1#MA0439.1;3;0.00689031;3.27979;0.678015;8;CTTTGCGC;CTTATCTCCGC;+!ETS1#MA0098.1;-1;0.00714841;3.40264;0.678015;6;CTTTGCGC;CTTCCG;+!HAL9#MA0311.1;-2;0.00819521;3.90092;0.706147;5;CTTTGCGC;TTCCG;-!YKL222C#MA0428.1;0;0.00957545;4.55791;0.706147;8;CTTTGCGC;ATTTCCGTT;-!MAC1#MA0326.1;-1;0.00967851;4.60697;0.706147;7;CTTTGCGC;TTTGCTCA;+!EDS1#MA0294.1;2;0.0114123;5.43223;0.769272;7;CTTTGCGC;ATTTTTCCG;-!CEP3#MA0282.1;-1;0.0121658;5.79092;0.769272;7;CTTTGCGC;TTTCCGAG;-!SWI4#MA0401.1;0;0.0151913;7.23106;0.87621;8;CTTTGCGC;TTTCGCGT;-!Eip74EF#MA0026.1;-1;0.0163624;7.7885;0.87621;7;CTTTGCGC;CTTCCGG;-!PDR8#MA0354.1;0;0.0178745;8.50825;0.87621;8;CTTTGCGC;ATCTCCGT;-!ELK1#MA0028.1;-1;0.0194443;9.25551;0.87621;7;CTTTGCGC;CTTCCGGCTC;-!HOXA5#MA0158.1;1;0.0198894;9.46735;0.87621;7;CTTTGCGC;AATTAGTG;-!hb#MA0049.1;2;0.020536;9.77512;0.87621;8;CTTTGCGC;TTTTTTATGC;-!CHA4#MA0283.1;-1;0.0209709;9.98217;0.87621;7;CTTTGCGC;TCTCCGCC;-
}}
}}

Latest revision as of 14:31, 7 September 2012

Full Name: 8-HTTTGCGC,CNhs13237,BestGuess:E2F1..5.p2.SwissRegulon.nucfreq(0.741183613392624),T:952.0(34.15%),B:10046.4(22.81%),P:1e-41

Motif matrix
POACGT
1238.952372.2320.952339.864
20.9520.9520.952949.144
3218.0080.9520.952732.088
4233.240.9520.952716.856
50.952325.584478.856146.608
60.952949.1440.9520.952
70.9520.952949.1440.952
8147.56481.712165.648157.08

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
YRM1#MA0438.100.001204930.5735490.6264778CTTTGCGCATTTCCGT-
DAL82#MA0291.110.001321010.6287990.6264778CTTTGCGCAATGTGCGC+
RDR1#MA0360.1-10.003621731.723940.6780157CTTTGCGCGTTCCGCA-
id1#MA0120.150.004255822.025770.6780157CTTTGCGCTTTTCCTTTTCG+
FHL1#MA0295.1-10.004390142.089710.6780157CTTTGCGCTTTGCGTC-
E2F1#MA0024.100.005304842.52510.6780158CTTTGCGCTTTGGCGC+
RGT1#MA0367.130.005688162.707560.6780158CTTTGCGCAATTTTTCCGG+
CUP2#MA0287.110.006066532.887670.6780158CTTTGCGCCATTTCTGCTG-
YRR1#MA0439.130.006890313.279790.6780158CTTTGCGCCTTATCTCCGC+
ETS1#MA0098.1-10.007148413.402640.6780156CTTTGCGCCTTCCG+
HAL9#MA0311.1-20.008195213.900920.7061475CTTTGCGCTTCCG-
YKL222C#MA0428.100.009575454.557910.7061478CTTTGCGCATTTCCGTT-
MAC1#MA0326.1-10.009678514.606970.7061477CTTTGCGCTTTGCTCA+
EDS1#MA0294.120.01141235.432230.7692727CTTTGCGCATTTTTCCG-
CEP3#MA0282.1-10.01216585.790920.7692727CTTTGCGCTTTCCGAG-
SWI4#MA0401.100.01519137.231060.876218CTTTGCGCTTTCGCGT-
Eip74EF#MA0026.1-10.01636247.78850.876217CTTTGCGCCTTCCGG-
PDR8#MA0354.100.01787458.508250.876218CTTTGCGCATCTCCGT-
ELK1#MA0028.1-10.01944439.255510.876217CTTTGCGCCTTCCGGCTC-
HOXA5#MA0158.110.01988949.467350.876217CTTTGCGCAATTAGTG-
hb#MA0049.120.0205369.775120.876218CTTTGCGCTTTTTTATGC-
CHA4#MA0283.1-10.02097099.982170.876217CTTTGCGCTCTCCGCC-
Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=MacroAPE_1083:8-HTTTGCGC&oldid=2134389"