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MacroAPE 1083:CNhs11828 bu f1: Difference between revisions

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-129A4;0.873493!12183-129A5;0.317697!12184-129A6;0.745797!10809-111A8;0.401813!10597-108E3;0.113931!10717-109I6;0.432501!10455-106G5;0.00103773!10534-107G3;0.00485247!10429-106D6;0.0145504!10464-106H5;0.137279!10827-111C8;0.00250385!10789-110H6;0.0121949!10828-111C9;0.000253461!10788-110H5;0.00526049!10792-110H9;0.00664684!10765-110E9;0.0268142!10829-111D1;0.0115104!10830-111D2;0.0114725!10831-111D3;0.231939!10832-111D4;0.0208773!10833-111D5;0.00329478!10764-110E8;0.00165585!10770-110F5;0.000184762!10399-106A3;0.0141845!10400-106A4;0.000276078!10405-106A9;0.000548192!10834-111D6;0.000612296!10835-111D7;0.00792099!10836-111D8;0.0373907!10837-111D9;0.654234!10699-109G6;0.172015!10802-111A1;0.568086!10796-110I4;0.572769!10010-101C1;0.00628999!10810-111A9;1.89837e-05!10421-106C7;0.0318959!10708-109H6;0.0199208!12235-129G3;2.36303e-05!12236-129G4;0.979852!12237-129G5;0.92101!10167-103B5;0.99816!10151-102I7;0.00276947!10428-106D5;0.000474869!10795-110I3;0.93375!10805-111A4;0.00154227!10052-101G7;1.5643e-05!10189-103D9;7.61659e-06!10589-108D4;0.00518583!10425-106D2;0.0193121!10427-106D4;0.957584!10702-109G9;0.0252415!10432-106D9;0.0212175!10496-107C1;0.0019947!10718-109I7;3.77278e-05!10011-101C2;0.00071976!10053-101G8;2.66535e-08!10686-109F2;0.864142!10084-102B3;0.874426!10012-101C3;0.000151752!10085-102B4;0.000354526!10482-107A5;0.017534!10419-106C5;0.019027!10080-102A8;0.0327385!10760-110E4;0.0126255!10709-109H7;0.000451748!10710-109H8;0.00355945!10703-109H1;0.00454515!10719-109I8;0.187301!10642-109A3;0.104684!10177-103C6;0.322739!10164-103B2;0.00672644!10173-103C2;0.00479001!10166-103B4;0.0281678!10083-102B2;0.00975385!10188-103D8;0.0128527!10552-107I3;0.000407793!10553-107I4;6.0377e-06!10013-101C4;0.143269!10536-107G5;7.90656e-08!10618-108G6;0.81301!10423-106C9;6.8697e-05!10785-110H2;0.0266571!12238-129G6;0.00154844!12239-129G7;0.277135!12240-129G8;0.0498833!10416-106C2;0.169343!10801-110I9;0.0139558!10766-110F1;0.0137208!10824-111C5;0.0282981!10825-111C6;0.00150963!10826-111C7;0.00197548!10454-106G4;0.00834259!10409-106B4;0.0247618!10638-108I8;0.00888581!10636-108I6;1.98307e-10!10513-107D9;0.000375465!10420-106C6;0.0028848!10082-102B1;0.18403!10014-101C5;0.162422!10070-101I7;0.00679996!10452-106G2;0.0249063!10453-106G3;0.510097!10449-106F8;0.101437!10042-101F6;0.0802896!10069-101I6;6.9214e-06!10193-103E4;5.67023e-05!10631-108I1;0.000545331!10438-106E6;0.00805663!10488-107B2;0.00659844!10196-103E7;2.22451e-06!10071-101I8;0.00238768!10071-101I8;0.00650282!10041-101F5;0.020788!10451-106G1;1.15072e-05!10450-106F9;0.0129101!10604-108F1;0.000976897!10605-108F2;0.00689724!10606-108F3;0.00641675!10603-108E9;0.00444907!10497-107C2;0.00489681!10448-106F7;0.395179!10643-109A4;0.00693747!10426-106D3;0.0205847!10431-106D8;0.0118114!10197-103E8;0.0376913!10443-106F2;8.78742e-06!10815-111B5;0.00842351!10816-111B6;2.52239e-05!10817-111B7;0.000130228!10015-101C6;4.46401e-05!10410-106B5;0.0104877!10054-101G9;0.48512!10758-110E2;4.1185e-05!10711-109H9;0.0682307!10040-101F4;0.111258!10470-106I2;0.000791139!10415-106C1;0.00022926!10198-103E9;0.445051!10614-108G2;0.000196095!10612-108F9;0.0689821!10549-107H9;1.42808e-06!10615-108G3;0.171431!10487-107B1;0.352609!10433-106E1;1.21109e-06!10688-109F4;0.0882997!10444-106F3;0.00459423!10444-106F3;0.641344!10485-107A8;0.846413!10413-106B8;0.0171636!10175-103C4;0.945212!10161-103A8;0.00564404!12131-128D7;0.000242188!10624-108H3;0.823852!10712-109I1;0.231736!10205-103F7;0.00790374!10206-103F8;3.93267e-08!10207-103F9;5.383e-08!10050-101G5;5.84726e-11!10051-101G6;0.167761!10016-101C7;0.000627442!10046-101G1;7.69508e-07!10778-110G4;3.61894e-07!10633-108I3;0.00437343!10818-111B8;0.14454!10819-111B9;0.000540244!10820-111C1;0.000503017!10484-107A7;0.000714704!10808-111A7;0.00128929!10169-103B7;0.0431484!10153-102I9;0.00271513!13425-144D5;0.000328274!13433-144E4;0.00190393!13437-144E8;0.00111444!11904-125F5;6.64808e-05!11905-125F6;0.228414!10039-101F3;0.282056!10791-110H8;0.000836011!10017-101C8;0.0201411!10045-101F9;0.308969!10509-107D5;0.02982!10839-111E2;0.698174!10692-109F8;4.77317e-05!10079-102A7;0.046935!10078-102A6;0.000114461!10721-110A1;0.000132266!10569-108B2;0.000690926!10570-108B3;0.00447856!10571-108B4;0.000297906!10647-109A8;0.000860627!10752-110D5;0.406694!10782-110G8;0.0545383!10726-110A6;0.0304707!10018-101C9;0.000132552!10086-102B5;0.762753!10182-103D2;0.806208!10165-103B3;0.000542256!10499-107C4;0.000262238!10408-106B3;0.00061177!10019-101D1;0.289378!10068-101I5;0.0711386!10075-102A3;0.000584267!10077-102A5;0.163333!10727-110A7;0.571811!10775-110G1;0.0736897!10412-106B7;0.00818811!12231-129F8;0.020293!12232-129F9;0.0300846!12233-129G1;0.00952611!12234-129G2;0.0410729!10414-106B9;0.0982289!10170-103B8;0.00318964!10183-103D3;0.00488379!10150-102I6;0.00450188!10174-103C3;0.00115199!10155-103A2;0.000154382!10038-101F2;3.74742e-05!10838-111E1;1.52798e-05!10759-110E3;0.175506!10514-107E1;0.0117014!10465-106H6;0.216386!10691-109F7;0.155531!10843-111E6;0.000112422!10844-111E7;0.379418!11747-123G1;0.411791!11748-123G2;0.308593!11749-123G3;0.152436!11750-123G4;0.0991302!11751-123G5;0.0620097!11840-124H4;0.0261517!11752-123G6;0.0307445!11753-123G7;0.266042!11754-123G8;0.00358686!11755-123G9;0.236312!11756-123H1;0.560548!11833-124G6;0.103766!11760-123H5;0.236784!11836-124G9;0.0194081!11758-123H3;0.0701517!11835-124G8;0.0103052!11762-123H7;0.00217818!11838-124H2;0.116963!11757-123H2;0.00719229!11759-123H4;0.196338!11761-123H6;0.0517498!11842-124H6;0.0394201!11837-124H1;0.0170258!10568-108B1;0.00393111!13230-141I8;0.31935!13231-141I9;0.123016!10696-109G3;0.100718!10493-107B7;0.039651!10494-107B8;0.00759834!10850-111F4;0.0195111!10851-111F5;0.000262954!10852-111F6;0.000869262!10853-111F7;1.12894e-06!10854-111F8;0.000193692!10855-111F9;0.00732682!10856-111G1;0.177114!10847-111F1;0.011913!10846-111E9;0.00758689!10848-111F2;0.000329076!10845-111E8;2.11126e-07!10857-111G2;3.01354e-06!10858-111G3;3.1458e-06!10156-103A3;3.30969e-07!11901-125F2;0.000787576!11902-125F3;0.0183248!11903-125F4;0.125851!10689-109F5;0.0487184!10648-109A9;7.1582e-05!10784-110H1;0.00240334!10744-110C6;0.00173021!10772-110F7;0.0322624!10474-106I6;3.35108e-05!10600-108E6;0.0778716!10684-109E9;0.20311!12226-129F3;0.592821!12227-129F4;0.01347!10508-107D4;0.480777!10539-107G8;0.658159!10607-108F4;0.612443!10555-107I6;0.0600773!10774-110F9;0.896495!10637-108I7;2.59207e-05!10663-109C6;0.8499!10728-110A8;0.0282849!10729-110A9;0.309053!10430-106D7;0.100459!10730-110B1;0.230111!10813-111B3;0.484284!10812-111B2;0.109688!10037-101F1;0.598061!10172-103C1;0.000995472!10163-103B1;0.00559282!10076-102A4;0.00052221!10073-102A1;0.0008879!10036-101E9;0.0365042!10195-103E6;0.000472494!10277-104E7;0.00104913!10434-106E2;0.000697259!10550-107I1;0.0453717!10545-107H5;7.87358e-05!10544-107H4;0.00526255!10704-109H2;0.0167473!10510-107D6;0.10505!10558-107I9;0.529727!10020-101D2;0.0606491!10732-110B3;0.000366549!10049-101G4;0.649006!10698-109G5;0.343744!10437-106E5;0.20704!10417-106C3;0.0106852!10035-101E8;0.113611!10171-103B9;0.000593181!10157-103A4;0.00926464!10034-101E7;0.00143928!10072-101I9;0.000455548!10199-103F1;0.040442!10200-103F2;0.128872!10697-109G4;1.40944e-05!10723-110A3;0.563041!10179-103C8;0.112633!10160-103A7;0.00427735!10180-103C9;0.00488925!10162-103A9;0.0184084!10021-101D3;0.00458491!10840-111E3;0.0241325!10706-109H4;0.00161552!10033-101E6;0.487702!10032-101E5;0.000246506!10490-107B4;0.000663489!10439-106E7;6.58067e-06!10022-101D4;0.000683705!10176-103C5;6.86753e-06!10469-106I1;0.00681695!10067-101I4;0.00419317!10411-106B6;0.000651861!10471-106I3;0.00311537!10030-101E3;0.00221775!10475-106I7;9.53917e-06!10787-110H4;0.259437!10477-106I9;0.21599!10695-109G2;0.66607!11771-123I7;0.000243324!11772-123I8;0.053916!11773-123I9;0.277772!10093-102C3;0.867037!10442-106F1;0.144081!10442-106F1;0.0329291!10201-103F3;0.0658393!10639-108I9;0.000170217!11843-124H7;0.180342!11841-124H5;0.0050599!10693-109F9;0.00371499!10436-106E4;0.0472068!10483-107A6;0.00122668!10282-104F3;0.00673732!10023-101D5;0.000157807!10066-101I3;4.50326e-05!10065-101I2;0.00620361!10800-110I8;0.000435186!10610-108F7;0.0886464!10841-111E4;0.702069!10541-107H1;0.0722847!10842-111E5;0.00948749!10562-108A4;0.315663!10024-101D6;0.150685!10064-101I1;0.0806842!10609-108F6;0.0598702!10048-101G3;0.0331821!10781-110G7;6.43145e-08!10181-103D1;0.838187!10159-103A6;4.71043e-05!10056-101H2;8.48563e-06!10737-110B8;3.04218e-05!10025-101D7;0.0146229!10044-101F8;0.385703!10424-106D1;0.0152471!10463-106H4;0.022683!10616-108G4;0.0024733!10486-107A9;0.0388951!10062-101H8;1.06087e-05!10202-103F4;1.14719e-05!10158-103A5;0.00874071!10441-106E9;2.24845e-05!10031-101E4;0.0847162!10063-101H9;0.000414264!10063-101H9;0.0277052!11763-123H8;2.99589e-05!11765-123I1;0.00796674!11768-123I4;0.112456!10807-111A6;0.0416809!10790-110H7;0.129246!10798-110I6;0.00390329!10786-110H3;0.969367!10591-108D6;0.0631112!10593-108D8;0.00980562!10590-108D5;0.344463!10026-101D8;0.000507777!10096-102C6;0.0999015!10168-103B6;0.609273!10154-103A1;0.000725773!10209-103G2;0.000340703!10061-101H7;0.00317519!10027-101D9;0.000235211!10043-101F7;0.499131!10783-110G9;0.126372!10028-101E1;0.00912669!10060-101H6;0.0130085!10203-103F5;0.000293994!10059-101H5;0.0064611!10047-101G2;0.00344596!10029-101E2;0.226879!10058-101H4;0.0194453!10418-106C4;5.98486e-05!10492-107B6;0.00203647!10694-109G1;0.000388527!10797-110I5;0.0910655!10057-101H3;0.0452949!10100-102D1;6.38293e-05!10055-101H1;3.39786e-06!10204-103F6;1.0168e-05!10191-103E2;7.01061e-05!10563-108A5;0.00104364
|name=CNhs11828_bu_f1
|name=CNhs11828_bu_f1
|tomtom_result=SP1#MA0079.2;-2;0.000240298;0.114382;0.127673;10;CCCCCAGCCTCC;CCCCGCCCCC;+!CRZ1#MA0285.1;-2;0.000268856;0.127975;0.127673;9;CCCCCAGCCTCC;CTAAGCCAC;+!ACE2#MA0267.1;-2;0.0014326;0.681917;0.453536;7;CCCCCAGCCTCC;ACCAGCA;+!SP1#MA0079.2;-1;0.00278302;1.32472;0.465559;10;CCCCCAGCCTCC;ACCCCGCCCC;-!NHLH1#MA0048.1;-1;0.002854;1.3585;0.465559;11;CCCCCAGCCTCC;GCGCAGCTGCGT;+!abi4#MA0123.1;-2;0.00294115;1.39999;0.465559;10;CCCCCAGCCTCC;CGGTGCCCCC;+!Myf#MA0055.1;-1;0.00507353;2.415;0.507521;11;CCCCCAGCCTCC;CAGCAGCTGCTG;-!znf143#MA0088.1;3;0.00512305;2.43857;0.507521;12;CCCCCAGCCTCC;GATTTCCCATAATGCCTTGC;+!IXR1#MA0323.1;-2;0.00534374;2.54362;0.507521;10;CCCCCAGCCTCC;CCCCGCTTCCGGCTT;-!SWI5#MA0402.1;-1;0.00894509;4.25786;0.772327;8;CCCCCAGCCTCC;AACCAGCA;-!Zfx#MA0146.1;3;0.0100253;4.77206;0.783019;11;CCCCCAGCCTCC;CAGGCCTCGGCCCC;-!Pax4#MA0068.1;14;0.0107178;5.10168;0.783019;12;CCCCCAGCCTCC;GAAAAATTTCCCATACTCCACTCCCCCCCC;+!Myb#MA0100.1;-4;0.0123475;5.87741;0.792922;8;CCCCCAGCCTCC;CAACGGCC;-!Gamyb#MA0034.1;-2;0.0125231;5.96101;0.792922;10;CCCCCAGCCTCC;GACAACCGCC;+!YGR067C#MA0425.1;0;0.0168064;7.99984;0.8794;12;CCCCCAGCCTCC;ACCCCACTTTTTTG;+!NHP10#MA0344.1;0;0.016854;8.02251;0.8794;8;CCCCCAGCCTCC;TCCCCGGC;-!btd#MA0443.1;-3;0.0174627;8.31223;0.8794;9;CCCCCAGCCTCC;TCCGCCCCCT;-!CHA4#MA0283.1;-1;0.0206163;9.81338;0.95028;8;CCCCCAGCCTCC;TCTCCGCC;-
}}
}}

Latest revision as of 14:35, 7 September 2012

Full Name: CNhs11828_bu_f1

Motif matrix
POACGT
122.975918962465602101.5790836148028898.8403149457739794.90171271314861
26.80421423910297145.0468081220225347.264061063405535119.18194681165994
339.24136340293892206.962889685750354.3608243122212167.73195283528051
436.069494477007154179.067661295115374.7389714461193528.420903017949097
54.904581618218254295.211515039860848.4133323523288589.767601225783087
6289.058988265373441.06441912178638426.651430221574791.522192627456451
71.514213901506380212.036451904927734304.746364429756850.0
827.111825810574267269.787840201076920.0730259864472381.3243382380928597
94.071973962604577213.976727515166743.302516233991980796.94581252442762
1036.8026686332111261.38824008249802102.51999860444175117.58612291604013
112.9970971201091343245.7578683630994862.503483577814567.0385811751678045
124.918357216901615222.8443902754625612.89971537514331277.63456736868356

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
SP1#MA0079.2-20.0002402980.1143820.12767310CCCCCAGCCTCCCCCCGCCCCC+
CRZ1#MA0285.1-20.0002688560.1279750.1276739CCCCCAGCCTCCCTAAGCCAC+
ACE2#MA0267.1-20.00143260.6819170.4535367CCCCCAGCCTCCACCAGCA+
SP1#MA0079.2-10.002783021.324720.46555910CCCCCAGCCTCCACCCCGCCCC-
NHLH1#MA0048.1-10.0028541.35850.46555911CCCCCAGCCTCCGCGCAGCTGCGT+
abi4#MA0123.1-20.002941151.399990.46555910CCCCCAGCCTCCCGGTGCCCCC+
Myf#MA0055.1-10.005073532.4150.50752111CCCCCAGCCTCCCAGCAGCTGCTG-
znf143#MA0088.130.005123052.438570.50752112CCCCCAGCCTCCGATTTCCCATAATGCCTTGC+
IXR1#MA0323.1-20.005343742.543620.50752110CCCCCAGCCTCCCCCCGCTTCCGGCTT-
SWI5#MA0402.1-10.008945094.257860.7723278CCCCCAGCCTCCAACCAGCA-
Zfx#MA0146.130.01002534.772060.78301911CCCCCAGCCTCCCAGGCCTCGGCCCC-
Pax4#MA0068.1140.01071785.101680.78301912CCCCCAGCCTCCGAAAAATTTCCCATACTCCACTCCCCCCCC+
Myb#MA0100.1-40.01234755.877410.7929228CCCCCAGCCTCCCAACGGCC-
Gamyb#MA0034.1-20.01252315.961010.79292210CCCCCAGCCTCCGACAACCGCC+
YGR067C#MA0425.100.01680647.999840.879412CCCCCAGCCTCCACCCCACTTTTTTG+
NHP10#MA0344.100.0168548.022510.87948CCCCCAGCCTCCTCCCCGGC-
btd#MA0443.1-30.01746278.312230.87949CCCCCAGCCTCCTCCGCCCCCT-
CHA4#MA0283.1-10.02061639.813380.950288CCCCCAGCCTCCTCTCCGCC-
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