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MacroAPE 1083:RTATACTKT,motif723: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!1;463.645;1.019;472.816;81.52!2;1.019;1.019;57.064;959.898!3;596.115;215.009;206.857;1.019!4;147.755;278.187;1.019;592.039!5;836.599;180.363;1...")
 
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10464-106H5;0.796045!10827-111C8;0.224332!10789-110H6;0.110391!10828-111C9;0.112524!10788-110H5;0.0490372!10792-110H9;0.785625!10765-110E9;0.427384!10829-111D1;0.293605!10830-111D2;0.937076!10831-111D3;0.124163!10832-111D4;0.419672!10833-111D5;0.354041!10764-110E8;0.711099!10770-110F5;0.424207!10399-106A3;0.308122!10400-106A4;0.25633!10405-106A9;0.147937!10834-111D6;0.261316!10835-111D7;0.721038!10836-111D8;0.743334!10837-111D9;0.122206!10699-109G6;0.585296!10802-111A1;0.205772!10796-110I4;0.260455!10010-101C1;0.822647!10810-111A9;0.8914!10421-106C7;0.273124!10708-109H6;0.0513984!12235-129G3;0.915092!12236-129G4;0.0151054!12237-129G5;9.58276e-10!10167-103B5;0.00106106!10151-102I7;0.298965!10428-106D5;0.256132!10795-110I3;0.0996964!10805-111A4;0.323294!10052-101G7;0.899295!10189-103D9;0.577945!10589-108D4;0.0753035!10425-106D2;0.751325!10427-106D4;0.163389!10702-109G9;0.0801373!10432-106D9;0.326802!10496-107C1;0.451947!10718-109I7;0.327519!10011-101C2;0.250163!10053-101G8;0.166181!10686-109F2;0.278188!10084-102B3;0.0183945!10012-101C3;0.327008!10085-102B4;0.162305!10482-107A5;0.247246!10419-106C5;0.297745!10080-102A8;0.573415!10760-110E4;0.106468!10709-109H7;0.989098!10710-109H8;0.875517!10703-109H1;0.999496!10719-109I8;0.148738!10642-109A3;0.64724!10177-103C6;0.672165!10164-103B2;0.369463!10173-103C2;0.427079!10166-103B4;0.246714!10083-102B2;0.204574!10188-103D8;0.313143!10552-107I3;0.212909!10553-107I4;0.326875!10013-101C4;0.470956!10536-107G5;0.100858!10618-108G6;0.00113962!10423-106C9;0.367883!10785-110H2;0.138932!12238-129G6;0.0373333!12239-129G7;0.168467!12240-129G8;0.0758763!10416-106C2;0.520417!10801-110I9;0.0815989!10766-110F1;0.497052!10824-111C5;0.0858147!10825-111C6;0.0209958!10826-111C7;0.0250458!10454-106G4;0.013832!10409-106B4;0.100571!10638-108I8;0.091399!10636-108I6;0.822732!10513-107D9;0.886007!10420-106C6;0.696722!10082-102B1;0.963177!10014-101C5;0.00866225!10070-101I7;0.0946587!10452-106G2;0.0709466!10453-106G3;0.0279973!10449-106F8;0.0496852!10042-101F6;0.039422!10069-101I6;0.258758!10193-103E4;0.297595!10631-108I1;0.328493!10438-106E6;0.294452!10488-107B2;0.927704!10196-103E7;0.87331!10071-101I8;0.00313503!10071-101I8;0.0276719!10041-101F5;0.530672!10451-106G1;0.980391!10450-106F9;0.0262898!10604-108F1;0.298194!10605-108F2;0.466921!10606-108F3;0.713951!10603-108E9;0.685592!10497-107C2;0.990357!10448-106F7;0.401994!10643-109A4;0.159673!10426-106D3;0.108814!10431-106D8;0.415298!10197-103E8;0.677855!10443-106F2;0.206526!10815-111B5;0.120991!10816-111B6;0.147079!10817-111B7;0.266081!10015-101C6;0.207829!10410-106B5;0.0350968!10054-101G9;0.928841!10758-110E2;0.53035!10711-109H9;0.0654725!10040-101F4;0.377955!10470-106I2;0.247073!10415-106C1;0.250534!10198-103E9;0.0656508!10614-108G2;0.118217!10612-108F9;0.0949923!10549-107H9;0.35317!10615-108G3;0.637148!10487-107B1;0.750528!10433-106E1;0.908486!10688-109F4;0.832365!10444-106F3;0.214365!10444-106F3;0.371923!10485-107A8;0.27651!10413-106B8;0.14129!10175-103C4;0.570924!10161-103A8;0.298355!12131-128D7;0.252043!10624-108H3;0.878719!10712-109I1;0.182361!10205-103F7;0.0591961!10206-103F8;0.924911!10207-103F9;0.741361!10050-101G5;0.962868!10051-101G6;0.632367!10016-101C7;0.85924!10046-101G1;0.566399!10778-110G4;0.983291!10633-108I3;0.080029!10818-111B8;0.822067!10819-111B9;0.537595!10820-111C1;0.523845!10484-107A7;0.530791!10808-111A7;0.533435!10169-103B7;0.0341432!10153-102I9;0.355135!13425-144D5;0.294044!13433-144E4;0.375044!13437-144E8;0.588941!11904-125F5;0.386207!11905-125F6;0.024591!10039-101F3;0.247265!10791-110H8;0.272904!10017-101C8;0.652769!10045-101F9;0.706851!10509-107D5;0.777197!10839-111E2;0.496059!10692-109F8;0.848719!10079-102A7;0.258226!10078-102A6;0.955657!10721-110A1;0.712024!10569-108B2;0.00539816!10570-108B3;0.721365!10571-108B4;0.400929!10647-109A8;0.729108!10752-110D5;0.142769!10782-110G8;0.0446261!10726-110A6;0.0328505!10018-101C9;0.16281!10086-102B5;0.792655!10182-103D2;0.211236!10165-103B3;0.446735!10499-107C4;0.232669!10408-106B3;0.837586!10019-101D1;0.0901261!10068-101I5;0.140209!10075-102A3;0.0465421!10077-102A5;0.0717816!10727-110A7;0.412869!10775-110G1;0.0185673!10412-106B7;0.0671216!12231-129F8;0.429189!12232-129F9;0.589488!12233-129G1;0.781645!12234-129G2;0.939241!10414-106B9;0.852629!10170-103B8;0.848459!10183-103D3;0.141814!10150-102I6;0.315322!10174-103C3;0.180333!10155-103A2;0.982839!10038-101F2;0.427585!10838-111E1;0.367878!10759-110E3;0.797408!10514-107E1;0.0470436!10465-106H6;0.132245!10691-109F7;0.384659!10843-111E6;0.257913!10844-111E7;0.524295!11747-123G1;0.300639!11748-123G2;0.377688!11749-123G3;0.242414!11750-123G4;0.395313!11751-123G5;0.246041!11840-124H4;0.298042!11752-123G6;0.612166!11753-123G7;0.791861!11754-123G8;0.916002!11755-123G9;0.717277!11756-123H1;0.864927!11833-124G6;0.254067!11760-123H5;0.253171!11836-124G9;0.120899!11758-123H3;0.364509!11835-124G8;0.211308!11762-123H7;0.10673!11838-124H2;0.00301199!11757-123H2;0.0507575!11759-123H4;0.229892!11761-123H6;0.407949!11842-124H6;0.0262155!11837-124H1;0.297976!10568-108B1;0.227381!13230-141I8;0.137685!13231-141I9;0.152204!10696-109G3;0.12677!10493-107B7;0.448256!10494-107B8;0.105244!10850-111F4;0.000510233!10851-111F5;0.281916!10852-111F6;0.00392768!10853-111F7;0.112819!10854-111F8;0.755066!10855-111F9;0.0104334!10856-111G1;0.0892605!10847-111F1;0.00400354!10846-111E9;0.240378!10848-111F2;0.0249546!10845-111E8;0.000919633!10857-111G2;0.861473!10858-111G3;0.0072113!10156-103A3;0.204162!11901-125F2;0.183356!11902-125F3;0.00330403!11903-125F4;0.0217085!10689-109F5;0.037057!10648-109A9;0.636894!10784-110H1;0.433405!10744-110C6;0.452205!10772-110F7;0.0146393!10474-106I6;0.00539608!10600-108E6;0.108828!10684-109E9;0.0412049!12226-129F3;0.0549379!12227-129F4;0.288704!10508-107D4;0.423412!10539-107G8;0.00669518!10607-108F4;0.246306!10555-107I6;0.121187!10774-110F9;0.0961697!10637-108I7;0.820318!10663-109C6;0.458325!10728-110A8;0.323085!10729-110A9;0.171501!10430-106D7;0.112065!10730-110B1;0.187263!10813-111B3;0.159842!10812-111B2;0.169629!10037-101F1;0.0845534!10172-103C1;0.28426!10163-103B1;0.284642!10076-102A4;0.172002!10073-102A1;0.302693!10036-101E9;0.403944!10195-103E6;0.207209!10277-104E7;0.286118!10434-106E2;0.608004!10550-107I1;0.206771!10545-107H5;0.808396!10544-107H4;0.437577!10704-109H2;0.596066!10510-107D6;0.961127!10558-107I9;0.327534!10020-101D2;0.753671!10732-110B3;0.26544!10049-101G4;0.997424!10698-109G5;0.0582468!10437-106E5;0.050595!10417-106C3;0.237643!10035-101E8;0.994633!10171-103B9;0.175763!10157-103A4;0.185312!10034-101E7;0.146287!10072-101I9;0.174856!10199-103F1;0.448327!10200-103F2;0.176558!10697-109G4;0.516633!10723-110A3;0.571206!10179-103C8;0.246184!10160-103A7;0.733778!10180-103C9;0.790133!10162-103A9;0.72607!10021-101D3;0.934353!10840-111E3;0.877166!10706-109H4;0.14894!10033-101E6;0.0246085!10032-101E5;0.309179!10490-107B4;0.2!10439-106E7;0.327409!10022-101D4;0.338035!10176-103C5;0.221325!10469-106I1;0.302068!10067-101I4;0.791505!10411-106B6;0.120495!10471-106I3;0.0442331!10030-101E3;0.31972!10475-106I7;0.583645!10787-110H4;0.935507!10477-106I9;0.922181!10695-109G2;0.344909!11771-123I7;0.157231!11772-123I8;0.220704!11773-123I9;0.993253!10093-102C3;0.818632!10442-106F1;0.585897!10442-106F1;0.811038!10201-103F3;0.819109!10639-108I9;0.0745393!11843-124H7;0.0182006!11841-124H5;0.564359!10693-109F9;0.508712!10436-106E4;0.642057!10483-107A6;0.427656!10282-104F3;0.988348!10023-101D5;0.618015!10066-101I3;0.731056!10065-101I2;0.167182!10800-110I8;0.058766!10610-108F7;0.131342!10841-111E4;0.0943574!10541-107H1;0.943423!10842-111E5;0.387891!10562-108A4;0.860186!10024-101D6;0.462151!10064-101I1;0.01981!10609-108F6;0.0203498!10048-101G3;0.58927!10781-110G7;0.0539051!10181-103D1;0.983431!10159-103A6;0.81036!10056-101H2;0.382131!10737-110B8;0.907999!10025-101D7;0.100418!10044-101F8;0.630749!10424-106D1;0.936532!10463-106H4;0.046652!10616-108G4;0.977005!10486-107A9;0.230734!10062-101H8;0.867659!10202-103F4;0.0106751!10158-103A5;0.41978!10441-106E9;0.419574!10031-101E4;0.566146!10063-101H9;0.189218!10063-101H9;0.441326!11763-123H8;0.230312!11765-123I1;0.228685!11768-123I4;0.606022!10807-111A6;0.140072!10790-110H7;0.665507!10798-110I6;0.180532!10786-110H3;0.0560929!10591-108D6;0.394422!10593-108D8;0.0943104!10590-108D5;0.421657!10026-101D8;0.00900668!10096-102C6;0.543419!10168-103B6;0.726771!10154-103A1;0.312758!10209-103G2;0.345201!10061-101H7;0.426374!10027-101D9;0.0987242!10043-101F7;0.531736!10783-110G9;0.960254!10028-101E1;0.0975597!10060-101H6;0.515257!10203-103F5;0.173261!10059-101H5;0.60375!10047-101G2;0.449906!10029-101E2;0.490273!10058-101H4;0.598757!10418-106C4;0.129385!10492-107B6;0.216056!10694-109G1;0.60083!10797-110I5;0.408527!10057-101H3;0.664771!10100-102D1;0.934502!10055-101H1;0.0479066!10204-103F6;0.0650092!10191-103E2;0.044781!10563-108A5;0.933153
|name=RTATACTKT,motif723,CNhs12625,T:1019.0(22.89%),B:12627.1(16.36%),P:1e-28
|name=RTATACTKT,motif723,CNhs12625,T:1019.0(22.89%),B:12627.1(16.36%),P:1e-28
|tomtom_result=Foxa2#MA0047.2;1;0.00702557;3.34417;1;9;GTATACTGT;TGTTTACTTAGG;+!FOXL1#MA0033.1;-1;0.00991534;4.7197;1;8;GTATACTGT;TATGTATA;-!NHP6B#MA0346.1;7;0.0165925;7.89801;1;9;GTATACTGT;TTTATTTATATATAATATGA;+!FOXA1#MA0148.1;1;0.0170144;8.09885;1;9;GTATACTGT;TGTTTACTTTG;+!SIG1#MA0379.1;0;0.0179655;8.55157;1;5;GTATACTGT;ATATA;+!Cf2_II#MA0015.1;4;0.0184902;8.80135;1;6;GTATACTGT;GTATATATAC;-!GAL4#MA0299.1;0;0.0187175;8.90953;1;9;GTATACTGT;GAGTACTGTTCCCCG;-!NHP6A#MA0345.1;8;0.0201935;9.61213;1;9;GTATACTGT;TCATTTTTATATATAGGTCAT;-
}}
}}

Latest revision as of 14:38, 7 September 2012

Full Name: RTATACTKT,motif723,CNhs12625,T:1019.0(22.89%),B:12627.1(16.36%),P:1e-28

Motif matrix
POACGT
1463.6451.019472.81681.52
21.0191.01957.064959.898
3596.115215.009206.8571.019
4147.755278.1871.019592.039
5836.599180.3631.0191.019
61.019693.9391.019323.023
7292.4531.0191.019724.509
811.209154.888488.101364.802
9361.7451.0191.019655.217

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
Foxa2#MA0047.210.007025573.3441719GTATACTGTTGTTTACTTAGG+
FOXL1#MA0033.1-10.009915344.719718GTATACTGTTATGTATA-
NHP6B#MA0346.170.01659257.8980119GTATACTGTTTTATTTATATATAATATGA+
FOXA1#MA0148.110.01701448.0988519GTATACTGTTGTTTACTTTG+
SIG1#MA0379.100.01796558.5515715GTATACTGTATATA+
Cf2_II#MA0015.140.01849028.8013516GTATACTGTGTATATATAC-
GAL4#MA0299.100.01871758.9095319GTATACTGTGAGTACTGTTCCCCG-
NHP6A#MA0345.180.02019359.6121319GTATACTGTTCATTTTTATATATAGGTCAT-
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