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MacroAPE 1083:CEBPB ThioMac-CEBPb-ChIP-Seq/Homer: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!1;2844;912;3296;2756!2;4551;1569;3492;196!3;157;10;59;9582!4;441;10;9033;324!5;3707;29;10;6062!6;794;481;1148;7385!7;39;10;9749;10!8;618;8503;...")
 
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0.264292!10717-109I6;0.000857758!10455-106G5;0.504541!10534-107G3;0.908533!10429-106D6;0.262959!10464-106H5;0.945075!10827-111C8;0.0878639!10789-110H6;0.292117!10828-111C9;0.0968819!10788-110H5;0.11378!10792-110H9;0.344332!10765-110E9;0.570557!10829-111D1;0.101607!10830-111D2;0.436562!10831-111D3;0.794766!10832-111D4;0.164426!10833-111D5;0.546402!10764-110E8;0.290473!10770-110F5;0.260888!10399-106A3;0.125585!10400-106A4;0.374838!10405-106A9;0.197992!10834-111D6;0.542164!10835-111D7;0.726582!10836-111D8;0.0754971!10837-111D9;0.84584!10699-109G6;0.713183!10802-111A1;0.0386983!10796-110I4;0.107371!10010-101C1;0.844182!10810-111A9;0.959641!10421-106C7;0.00042342!10708-109H6;0.103125!12235-129G3;0.440988!12236-129G4;0.793009!12237-129G5;0.40189!10167-103B5;0.811702!10151-102I7;0.501821!10428-106D5;0.563769!10795-110I3;0.0148648!10805-111A4;0.403833!10052-101G7;0.0415357!10189-103D9;0.429937!10589-108D4;0.269152!10425-106D2;0.0139653!10427-106D4;0.242633!10702-109G9;0.860396!10432-106D9;0.853992!10496-107C1;0.297879!10718-109I7;0.000456609!10011-101C2;0.0725358!10053-101G8;0.447255!10686-109F2;0.621129!10084-102B3;0.333543!10012-101C3;0.237087!10085-102B4;0.410155!10482-107A5;0.146978!10419-106C5;0.0337769!10080-102A8;0.185852!10760-110E4;0.531403!10709-109H7;0.521648!10710-109H8;0.887612!10703-109H1;0.473208!10719-109I8;0.585945!10642-109A3;0.678087!10177-103C6;0.533996!10164-103B2;0.679342!10173-103C2;0.406411!10166-103B4;0.658005!10083-102B2;0.580399!10188-103D8;0.37758!10552-107I3;0.492873!10553-107I4;0.00146313!10013-101C4;0.0100199!10536-107G5;0.208427!10618-108G6;0.00512199!10423-106C9;0.00472228!10785-110H2;0.0519434!12238-129G6;0.289706!12239-129G7;0.100598!12240-129G8;0.963369!10416-106C2;0.360632!10801-110I9;0.175381!10766-110F1;0.0542888!10824-111C5;0.0636715!10825-111C6;0.851221!10826-111C7;0.515191!10454-106G4;0.754087!10409-106B4;0.964395!10638-108I8;0.211429!10636-108I6;0.570134!10513-107D9;0.888878!10420-106C6;0.513629!10082-102B1;0.820093!10014-101C5;0.00254973!10070-101I7;0.0318022!10452-106G2;0.00454975!10453-106G3;0.00453436!10449-106F8;0.0739469!10042-101F6;0.191749!10069-101I6;0.38498!10193-103E4;0.122206!10631-108I1;0.39094!10438-106E6;0.713427!10488-107B2;0.0707847!10196-103E7;0.208085!10071-101I8;0.31425!10071-101I8;3.97863e-05!10041-101F5;0.323014!10451-106G1;0.525902!10450-106F9;0.000797031!10604-108F1;0.350972!10605-108F2;0.129176!10606-108F3;0.185798!10603-108E9;0.0231008!10497-107C2;0.160159!10448-106F7;0.347804!10643-109A4;0.257461!10426-106D3;0.0140327!10431-106D8;0.302089!10197-103E8;0.621035!10443-106F2;0.188869!10815-111B5;0.604245!10816-111B6;0.90347!10817-111B7;0.15689!10015-101C6;0.985019!10410-106B5;0.506256!10054-101G9;0.0165034!10758-110E2;0.104834!10711-109H9;0.758798!10040-101F4;0.489963!10470-106I2;0.385737!10415-106C1;0.569602!10198-103E9;0.591644!10614-108G2;0.14312!10612-108F9;0.145569!10549-107H9;0.230926!10615-108G3;0.322761!10487-107B1;0.57199!10433-106E1;0.053283!10688-109F4;0.152858!10444-106F3;0.0509495!10444-106F3;0.183032!10485-107A8;0.181986!10413-106B8;0.154504!10175-103C4;0.0502081!10161-103A8;0.498506!12131-128D7;0.454516!10624-108H3;0.668795!10712-109I1;0.749798!10205-103F7;0.699648!10206-103F8;0.801904!10207-103F9;0.372977!10050-101G5;0.618483!10051-101G6;0.766453!10016-101C7;0.492481!10046-101G1;0.597322!10778-110G4;0.338476!10633-108I3;0.45085!10818-111B8;0.508381!10819-111B9;0.902377!10820-111C1;0.989969!10484-107A7;0.798939!10808-111A7;0.0165155!10169-103B7;0.0392739!10153-102I9;0.402936!13425-144D5;0.456849!13433-144E4;0.150222!13437-144E8;0.233677!11904-125F5;0.102074!11905-125F6;0.391979!10039-101F3;0.323921!10791-110H8;0.427414!10017-101C8;0.502583!10045-101F9;0.0318577!10509-107D5;0.00688243!10839-111E2;0.192227!10692-109F8;0.0542194!10079-102A7;0.187616!10078-102A6;0.126201!10721-110A1;0.441182!10569-108B2;0.0361145!10570-108B3;0.606444!10571-108B4;0.425202!10647-109A8;0.159967!10752-110D5;0.774861!10782-110G8;0.16238!10726-110A6;0.0727832!10018-101C9;0.253742!10086-102B5;0.132751!10182-103D2;0.402435!10165-103B3;0.570019!10499-107C4;0.65036!10408-106B3;0.0255073!10019-101D1;0.0157663!10068-101I5;0.70022!10075-102A3;0.403282!10077-102A5;0.557982!10727-110A7;0.836452!10775-110G1;0.562294!10412-106B7;0.382012!12231-129F8;0.0226202!12232-129F9;0.167074!12233-129G1;0.22962!12234-129G2;0.133753!10414-106B9;0.249729!10170-103B8;0.175692!10183-103D3;0.385376!10150-102I6;0.434249!10174-103C3;0.480404!10155-103A2;0.635737!10038-101F2;0.701731!10838-111E1;0.581284!10759-110E3;0.109297!10514-107E1;0.0487084!10465-106H6;0.0245982!10691-109F7;0.234483!10843-111E6;0.124812!10844-111E7;0.17161!11747-123G1;0.0884359!11748-123G2;0.816038!11749-123G3;0.097765!11750-123G4;0.440674!11751-123G5;0.726059!11840-124H4;0.762896!11752-123G6;0.28397!11753-123G7;0.0029705!11754-123G8;0.0361268!11755-123G9;0.906708!11756-123H1;0.531893!11833-124G6;0.679927!11760-123H5;0.00206965!11836-124G9;0.951269!11758-123H3;0.730067!11835-124G8;0.725013!11762-123H7;0.431723!11838-124H2;0.468928!11757-123H2;0.70276!11759-123H4;0.684212!11761-123H6;0.499023!11842-124H6;0.143757!11837-124H1;0.171941!10568-108B1;0.686147!13230-141I8;0.0167214!13231-141I9;0.365286!10696-109G3;0.290777!10493-107B7;0.777224!10494-107B8;0.165191!10850-111F4;0.965185!10851-111F5;0.000419386!10852-111F6;0.926038!10853-111F7;0.0642036!10854-111F8;0.00799056!10855-111F9;0.150528!10856-111G1;0.00399291!10847-111F1;0.482733!10846-111E9;0.57842!10848-111F2;0.821577!10845-111E8;0.801066!10857-111G2;0.875322!10858-111G3;0.531239!10156-103A3;0.249684!11901-125F2;0.383963!11902-125F3;0.224949!11903-125F4;0.474604!10689-109F5;0.255624!10648-109A9;0.0194622!10784-110H1;0.992621!10744-110C6;0.128536!10772-110F7;0.481247!10474-106I6;0.400086!10600-108E6;8.70747e-05!10684-109E9;0.330409!12226-129F3;0.279561!12227-129F4;0.000258045!10508-107D4;3.92836e-09!10539-107G8;0.385869!10607-108F4;0.533261!10555-107I6;0.207555!10774-110F9;0.87597!10637-108I7;0.326201!10663-109C6;0.239776!10728-110A8;0.262169!10729-110A9;0.113023!10430-106D7;0.579004!10730-110B1;0.646706!10813-111B3;0.781091!10812-111B2;0.199849!10037-101F1;0.578059!10172-103C1;0.431881!10163-103B1;0.469312!10076-102A4;0.435324!10073-102A1;0.347819!10036-101E9;0.296564!10195-103E6;0.346396!10277-104E7;0.314645!10434-106E2;0.586186!10550-107I1;0.391069!10545-107H5;0.286782!10544-107H4;0.508209!10704-109H2;0.223498!10510-107D6;0.0759809!10558-107I9;0.455265!10020-101D2;0.172315!10732-110B3;0.89456!10049-101G4;0.635184!10698-109G5;0.969494!10437-106E5;0.527731!10417-106C3;0.0460068!10035-101E8;0.539947!10171-103B9;0.401233!10157-103A4;0.283434!10034-101E7;0.484004!10072-101I9;0.363125!10199-103F1;0.257896!10200-103F2;0.0530283!10697-109G4;0.148341!10723-110A3;0.750398!10179-103C8;0.15902!10160-103A7;0.509397!10180-103C9;0.430581!10162-103A9;0.980769!10021-101D3;0.894342!10840-111E3;0.489354!10706-109H4;0.17298!10033-101E6;0.675905!10032-101E5;0.629086!10490-107B4;0.313224!10439-106E7;0.991682!10022-101D4;0.139785!10176-103C5;0.20076!10469-106I1;0.436585!10067-101I4;0.388508!10411-106B6;0.00250653!10471-106I3;0.701884!10030-101E3;0.766644!10475-106I7;0.278987!10787-110H4;0.447082!10477-106I9;0.444982!10695-109G2;0.0580948!11771-123I7;0.159417!11772-123I8;0.00264127!11773-123I9;0.30854!10093-102C3;0.2091!10442-106F1;0.158231!10442-106F1;0.271882!10201-103F3;0.218209!10639-108I9;0.307813!11843-124H7;0.587297!11841-124H5;0.837068!10693-109F9;0.0381729!10436-106E4;0.293804!10483-107A6;0.049886!10282-104F3;0.456973!10023-101D5;0.761404!10066-101I3;0.531597!10065-101I2;0.0197083!10800-110I8;0.200795!10610-108F7;0.134985!10841-111E4;0.256552!10541-107H1;0.890297!10842-111E5;0.0958414!10562-108A4;0.87839!10024-101D6;0.162683!10064-101I1;0.000738594!10609-108F6;1.34362e-08!10048-101G3;0.583743!10781-110G7;0.251204!10181-103D1;0.102098!10159-103A6;0.574421!10056-101H2;0.917528!10737-110B8;0.0736944!10025-101D7;0.254429!10044-101F8;0.645001!10424-106D1;0.833817!10463-106H4;0.48885!10616-108G4;0.0355237!10486-107A9;0.0516754!10062-101H8;0.38246!10202-103F4;0.0244843!10158-103A5;0.450021!10441-106E9;0.623989!10031-101E4;0.169224!10063-101H9;0.40356!10063-101H9;0.273614!11763-123H8;0.000570203!11765-123I1;0.172342!11768-123I4;0.603264!10807-111A6;0.219509!10790-110H7;0.324803!10798-110I6;0.15607!10786-110H3;0.0391025!10591-108D6;0.499545!10593-108D8;0.114138!10590-108D5;0.971691!10026-101D8;0.886992!10096-102C6;0.14128!10168-103B6;0.0188102!10154-103A1;0.40497!10209-103G2;0.49216!10061-101H7;0.607059!10027-101D9;0.0169336!10043-101F7;0.110578!10783-110G9;0.536362!10028-101E1;0.620253!10060-101H6;0.260715!10203-103F5;0.037336!10059-101H5;0.88583!10047-101G2;0.191471!10029-101E2;0.523496!10058-101H4;0.883082!10418-106C4;0.128304!10492-107B6;0.446881!10694-109G1;0.286988!10797-110I5;0.514697!10057-101H3;0.440837!10100-102D1;0.302556!10055-101H1;0.256674!10204-103F6;0.0118302!10191-103E2;0.737269!10563-108A5;0.132583
|name=CEBPB_ThioMac-CEBPb-ChIP-Seq/Homer
|name=CEBPB_ThioMac-CEBPb-ChIP-Seq/Homer
|tomtom_result=mab-3#MA0262.1;0;0.000761446;0.362448;0.724896;10;GATGTTGCAA;AATGTTGCGAATT;+!CEBPA#MA0102.2;-2;0.00221978;1.05661;0.861074;8;GATGTTGCAA;TTTCGCAAT;+!Cebpa#MA0102.1;0;0.00501882;2.38896;0.861074;10;GATGTTGCAA;GAGATTGCGAAA;-!Pou5f1#MA0142.1;3;0.00542216;2.58095;0.861074;10;GATGTTGCAA;CTTTGTTATGCAAAT;+!RFX1#MA0365.1;-2;0.00613427;2.91991;0.861074;8;GATGTTGCAA;GGTTGCTA;+!STE12#MA0393.1;-2;0.00666041;3.17036;0.861074;7;GATGTTGCAA;TGTTTCA;-!Ddit3::Cebpa#MA0019.1;-2;0.00745716;3.54961;0.861074;8;GATGTTGCAA;AGATGCAATCCC;+!Sox2#MA0143.1;4;0.0081404;3.87483;0.861074;10;GATGTTGCAA;CCTTTGTTATGCAAA;+!BRCA1#MA0133.1;-1;0.0163287;7.77245;1;7;GATGTTGCAA;GTGTTGT;-!slbo#MA0244.1;-3;0.0202222;9.62575;1;7;GATGTTGCAA;TTTGCAAT;-!HLF#MA0043.1;0;0.0204685;9.74299;1;10;GATGTTGCAA;GGTTACGCAATT;+
}}
}}

Latest revision as of 14:49, 7 September 2012

Full Name: CEBPB_ThioMac-CEBPb-ChIP-Seq/Homer

Motif matrix
POACGT
1284491232962756
2455115693492196
315710599582
4441109033324
5370729106062
679448111487385
73910974910
8618850310677
99778101010
109681881029

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
mab-3#MA0262.100.0007614460.3624480.72489610GATGTTGCAAAATGTTGCGAATT+
CEBPA#MA0102.2-20.002219781.056610.8610748GATGTTGCAATTTCGCAAT+
Cebpa#MA0102.100.005018822.388960.86107410GATGTTGCAAGAGATTGCGAAA-
Pou5f1#MA0142.130.005422162.580950.86107410GATGTTGCAACTTTGTTATGCAAAT+
RFX1#MA0365.1-20.006134272.919910.8610748GATGTTGCAAGGTTGCTA+
STE12#MA0393.1-20.006660413.170360.8610747GATGTTGCAATGTTTCA-
Ddit3::Cebpa#MA0019.1-20.007457163.549610.8610748GATGTTGCAAAGATGCAATCCC+
Sox2#MA0143.140.00814043.874830.86107410GATGTTGCAACCTTTGTTATGCAAA+
BRCA1#MA0133.1-10.01632877.7724517GATGTTGCAAGTGTTGT-
slbo#MA0244.1-30.02022229.6257517GATGTTGCAATTTGCAAT-
HLF#MA0043.100.02046859.74299110GATGTTGCAAGGTTACGCAATT+
Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=MacroAPE_1083:CEBPB_ThioMac-CEBPb-ChIP-Seq/Homer&oldid=2134498"