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MacroAPE 1083:12-SSARTSACMRCA: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!1;371.636;1090.366;1370.846;676.658!2;315.54;1451.484;1090.366;648.61!3;2159.696;1107.896;84.144;154.264!4;1865.192;73.626;1546.146;21.036!5;3...")
 
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12181-129A3;0.20805!12176-128I7;0.0997741!12177-128I8;0.258881!12182-129A4;0.230282!12183-129A5;0.0474465!12184-129A6;0.0326502!10809-111A8;0.233793!10597-108E3;0.220238!10717-109I6;0.338029!10455-106G5;0.854584!10534-107G3;0.590885!10429-106D6;0.742886!10464-106H5;0.261167!10827-111C8;0.315016!10789-110H6;0.061425!10828-111C9;0.193027!10788-110H5;0.37019!10792-110H9;0.152427!10765-110E9;0.242831!10829-111D1;0.524362!10830-111D2;0.395549!10831-111D3;0.141793!10832-111D4;0.0497628!10833-111D5;0.923126!10764-110E8;0.551823!10770-110F5;0.742945!10399-106A3;0.712782!10400-106A4;0.886753!10405-106A9;0.74489!10834-111D6;0.588648!10835-111D7;0.176593!10836-111D8;0.774255!10837-111D9;0.635836!10699-109G6;0.238786!10802-111A1;0.396654!10796-110I4;0.608288!10010-101C1;0.544235!10810-111A9;0.901028!10421-106C7;0.0593488!10708-109H6;0.609224!12235-129G3;0.769926!12236-129G4;0.225735!12237-129G5;0.0460989!10167-103B5;0.362939!10151-102I7;0.783371!10428-106D5;0.747392!10795-110I3;0.151178!10805-111A4;0.584964!10052-101G7;0.738245!10189-103D9;0.226264!10589-108D4;0.398383!10425-106D2;0.355471!10427-106D4;0.346238!10702-109G9;0.847073!10432-106D9;0.901737!10496-107C1;0.879446!10718-109I7;0.469655!10011-101C2;0.693602!10053-101G8;0.590399!10686-109F2;0.271908!10084-102B3;0.282084!10012-101C3;0.466397!10085-102B4;0.809419!10482-107A5;0.625252!10419-106C5;0.346496!10080-102A8;0.878747!10760-110E4;0.652696!10709-109H7;0.221251!10710-109H8;0.464153!10703-109H1;0.772539!10719-109I8;0.405824!10642-109A3;0.33568!10177-103C6;0.304921!10164-103B2;0.87922!10173-103C2;0.741171!10166-103B4;0.690879!10083-102B2;0.860099!10188-103D8;0.954848!10552-107I3;0.875757!10553-107I4;0.172275!10013-101C4;0.0247879!10536-107G5;0.0244948!10618-108G6;0.00132641!10423-106C9;0.292814!10785-110H2;0.959917!12238-129G6;0.557093!12239-129G7;0.709724!12240-129G8;5.15871e-05!10416-106C2;0.736987!10801-110I9;0.298718!10766-110F1;0.0788081!10824-111C5;0.650387!10825-111C6;0.300889!10826-111C7;0.356097!10454-106G4;0.296531!10409-106B4;0.334821!10638-108I8;0.590935!10636-108I6;0.891312!10513-107D9;0.0517367!10420-106C6;0.657358!10082-102B1;0.106952!10014-101C5;0.03865!10070-101I7;0.188515!10452-106G2;0.276449!10453-106G3;0.00491391!10449-106F8;0.917989!10042-101F6;0.550529!10069-101I6;0.841265!10193-103E4;0.360311!10631-108I1;0.904966!10438-106E6;0.92519!10488-107B2;0.134446!10196-103E7;0.526336!10071-101I8;0.15718!10071-101I8;0.0124157!10041-101F5;0.944035!10451-106G1;0.272127!10450-106F9;0.00525375!10604-108F1;0.478097!10605-108F2;0.850737!10606-108F3;0.693448!10603-108E9;0.475634!10497-107C2;0.6917!10448-106F7;0.834408!10643-109A4;0.848453!10426-106D3;0.925231!10431-106D8;0.90068!10197-103E8;0.186257!10443-106F2;0.178277!10815-111B5;0.442234!10816-111B6;0.350132!10817-111B7;0.0561094!10015-101C6;0.369484!10410-106B5;0.257048!10054-101G9;0.0265922!10758-110E2;0.31647!10711-109H9;0.511847!10040-101F4;0.85609!10470-106I2;0.814348!10415-106C1;0.910073!10198-103E9;0.322724!10614-108G2;0.226332!10612-108F9;0.591905!10549-107H9;0.846222!10615-108G3;0.48848!10487-107B1;0.301151!10433-106E1;0.1675!10688-109F4;0.284927!10444-106F3;0.594691!10444-106F3;0.82325!10485-107A8;0.967607!10413-106B8;0.29545!10175-103C4;0.433374!10161-103A8;0.604058!12131-128D7;0.935578!10624-108H3;0.00891079!10712-109I1;0.288905!10205-103F7;0.275213!10206-103F8;0.730605!10207-103F9;0.39466!10050-101G5;0.76154!10051-101G6;0.208537!10016-101C7;0.2621!10046-101G1;0.766313!10778-110G4;0.56386!10633-108I3;0.805901!10818-111B8;0.569986!10819-111B9;0.778547!10820-111C1;0.648436!10484-107A7;0.827886!10808-111A7;0.00345695!10169-103B7;0.815661!10153-102I9;0.901181!13425-144D5;0.805835!13433-144E4;0.0588921!13437-144E8;0.217375!11904-125F5;0.148473!11905-125F6;0.00944881!10039-101F3;0.00322646!10791-110H8;0.769273!10017-101C8;0.72283!10045-101F9;0.38519!10509-107D5;0.119117!10839-111E2;0.0809904!10692-109F8;0.538029!10079-102A7;0.414502!10078-102A6;0.144405!10721-110A1;0.45992!10569-108B2;0.663361!10570-108B3;0.335526!10571-108B4;0.14892!10647-109A8;0.0608553!10752-110D5;0.800898!10782-110G8;0.621526!10726-110A6;0.739733!10018-101C9;0.106297!10086-102B5;0.763667!10182-103D2;0.633531!10165-103B3;0.777275!10499-107C4;0.935305!10408-106B3;0.48057!10019-101D1;0.137371!10068-101I5;0.460917!10075-102A3;0.812382!10077-102A5;0.186483!10727-110A7;0.0688151!10775-110G1;0.484829!10412-106B7;0.128954!12231-129F8;0.598469!12232-129F9;0.00312942!12233-129G1;0.0354023!12234-129G2;0.0114651!10414-106B9;0.000473577!10170-103B8;0.734824!10183-103D3;0.928575!10150-102I6;0.948062!10174-103C3;0.909647!10155-103A2;0.987284!10038-101F2;0.960463!10838-111E1;0.838681!10759-110E3;0.260008!10514-107E1;0.825539!10465-106H6;0.13653!10691-109F7;0.903322!10843-111E6;0.849392!10844-111E7;0.631693!11747-123G1;0.987872!11748-123G2;0.376043!11749-123G3;0.836101!11750-123G4;0.880738!11751-123G5;0.928644!11840-124H4;0.680262!11752-123G6;0.820694!11753-123G7;0.116606!11754-123G8;0.671224!11755-123G9;0.244031!11756-123H1;0.201635!11833-124G6;0.349108!11760-123H5;0.64846!11836-124G9;0.31437!11758-123H3;0.184455!11835-124G8;0.233471!11762-123H7;0.229142!11838-124H2;0.492214!11757-123H2;0.332554!11759-123H4;0.377711!11761-123H6;0.506712!11842-124H6;0.603099!11837-124H1;0.959085!10568-108B1;0.181727!13230-141I8;0.501479!13231-141I9;0.857801!10696-109G3;0.859917!10493-107B7;0.975804!10494-107B8;0.673597!10850-111F4;0.961943!10851-111F5;0.551742!10852-111F6;0.360889!10853-111F7;0.421158!10854-111F8;0.761613!10855-111F9;0.388565!10856-111G1;0.0880166!10847-111F1;0.878849!10846-111E9;0.887202!10848-111F2;0.914726!10845-111E8;0.970146!10857-111G2;0.545354!10858-111G3;0.602942!10156-103A3;0.73622!11901-125F2;0.870661!11902-125F3;0.140523!11903-125F4;0.234937!10689-109F5;0.359538!10648-109A9;0.179133!10784-110H1;0.470401!10744-110C6;0.855226!10772-110F7;0.784194!10474-106I6;0.873593!10600-108E6;0.827554!10684-109E9;0.352203!12226-129F3;0.996998!12227-129F4;0.407068!10508-107D4;0.802101!10539-107G8;0.246249!10607-108F4;0.815692!10555-107I6;0.253459!10774-110F9;0.61699!10637-108I7;0.840468!10663-109C6;0.854135!10728-110A8;0.748678!10729-110A9;0.133858!10430-106D7;0.715092!10730-110B1;0.0504351!10813-111B3;0.290998!10812-111B2;0.739963!10037-101F1;0.86575!10172-103C1;0.763592!10163-103B1;0.831912!10076-102A4;0.981996!10073-102A1;0.903442!10036-101E9;0.967739!10195-103E6;0.61069!10277-104E7;0.806626!10434-106E2;0.822713!10550-107I1;0.621078!10545-107H5;0.962543!10544-107H4;0.847624!10704-109H2;0.644574!10510-107D6;0.535085!10558-107I9;0.937327!10020-101D2;0.840225!10732-110B3;0.285711!10049-101G4;0.714809!10698-109G5;0.0513392!10437-106E5;0.783252!10417-106C3;0.187743!10035-101E8;0.418372!10171-103B9;0.863977!10157-103A4;0.970059!10034-101E7;0.885527!10072-101I9;0.772801!10199-103F1;0.818135!10200-103F2;0.127068!10697-109G4;0.154656!10723-110A3;0.25758!10179-103C8;0.937538!10160-103A7;0.871493!10180-103C9;0.72441!10162-103A9;0.902455!10021-101D3;0.907245!10840-111E3;0.132857!10706-109H4;0.543641!10033-101E6;0.219398!10032-101E5;0.943313!10490-107B4;0.702917!10439-106E7;0.618921!10022-101D4;0.19798!10176-103C5;0.102621!10469-106I1;0.871567!10067-101I4;0.0385854!10411-106B6;0.0860637!10471-106I3;0.544839!10030-101E3;0.790811!10475-106I7;0.451141!10787-110H4;0.37606!10477-106I9;0.890707!10695-109G2;0.605899!11771-123I7;0.379072!11772-123I8;0.0500416!11773-123I9;0.00551019!10093-102C3;0.0347635!10442-106F1;0.0867248!10442-106F1;0.205019!10201-103F3;0.0856206!10639-108I9;0.289239!11843-124H7;0.177893!11841-124H5;0.691623!10693-109F9;0.722934!10436-106E4;0.163218!10483-107A6;0.329092!10282-104F3;0.390336!10023-101D5;0.914717!10066-101I3;0.956338!10065-101I2;0.0237141!10800-110I8;0.297267!10610-108F7;0.218599!10841-111E4;0.491464!10541-107H1;0.653966!10842-111E5;0.344152!10562-108A4;0.805726!10024-101D6;0.789855!10064-101I1;0.137988!10609-108F6;0.0396881!10048-101G3;0.473746!10781-110G7;0.555128!10181-103D1;0.64434!10159-103A6;0.858989!10056-101H2;0.688411!10737-110B8;0.642807!10025-101D7;0.359814!10044-101F8;0.183457!10424-106D1;0.197969!10463-106H4;0.779667!10616-108G4;0.466983!10486-107A9;0.621765!10062-101H8;0.032357!10202-103F4;0.472852!10158-103A5;0.0226251!10441-106E9;0.746418!10031-101E4;0.996154!10063-101H9;0.633443!10063-101H9;0.914287!11763-123H8;0.180622!11765-123I1;0.0638404!11768-123I4;0.322189!10807-111A6;0.696647!10790-110H7;0.495295!10798-110I6;0.252272!10786-110H3;0.158977!10591-108D6;0.274308!10593-108D8;0.18725!10590-108D5;0.418482!10026-101D8;0.402563!10096-102C6;0.348192!10168-103B6;0.0135352!10154-103A1;0.607914!10209-103G2;0.782227!10061-101H7;0.108039!10027-101D9;0.00921864!10043-101F7;0.492229!10783-110G9;0.937468!10028-101E1;0.261648!10060-101H6;0.0264613!10203-103F5;0.148746!10059-101H5;0.296855!10047-101G2;0.197909!10029-101E2;0.0231579!10058-101H4;0.234814!10418-106C4;0.079943!10492-107B6;0.824728!10694-109G1;0.684618!10797-110I5;0.812443!10057-101H3;0.905343!10100-102D1;0.00272784!10055-101H1;0.0926004!10204-103F6;0.0249579!10191-103E2;0.841868!10563-108A5;0.0783988
|name=12-SSARTSACMRCA,CNhs13545,BestGuess:PAX2_si_HM09(0.7022499609152),T:3506.0(43.86%),B:13765.9(33.72%),P:1e-78
|name=12-SSARTSACMRCA,CNhs13545,BestGuess:PAX2_si_HM09(0.7022499609152),T:3506.0(43.86%),B:13765.9(33.72%),P:1e-78
|tomtom_result=Pax2#MA0067.1;-1;0.00164237;0.78177;0.893278;8;GCAATCACAACA;GCGTGACT;-!ABF1#MA0265.1;-1;0.00187663;0.893278;0.893278;11;GCAATCACAACA;ATATCACTTTATACGA;-!HAP5#MA0316.1;1;0.00321853;1.53202;1;12;GCAATCACAACA;ACCAATCAGATCCCA;-!NFYA#MA0060.1;5;0.00563739;2.6834;1;11;GCAATCACAACA;CTCAGCCAATCAGCGC;+!Gfi#MA0038.1;0;0.00612443;2.91523;1;10;GCAATCACAACA;CAAATCACTG;+!Pax4#MA0068.1;8;0.00837663;3.98727;1;12;GCAATCACAACA;GAAAAATTTCCCATACTCCACTCCCCCCCC;+!Cebpa#MA0102.1;0;0.0107626;5.12298;1;12;GCAATCACAACA;GAGATTGCGAAA;-!HAP4#MA0315.1;1;0.0109644;5.21904;1;12;GCAATCACAACA;ACCAATCAGAGGCGA;+!BAS1#MA0278.1;8;0.0141131;6.71784;1;12;GCAATCACAACA;GCACAGCCAGAGTCAAGTCAA;+!CREB1#MA0018.2;-4;0.0176246;8.38932;1;8;GCAATCACAACA;TGACGTCA;-!CEBPA#MA0102.2;-3;0.0203346;9.67929;1;9;GCAATCACAACA;ATTGCGAAA;-
}}
}}

Latest revision as of 14:49, 7 September 2012

Full Name: 12-SSARTSACMRCA,CNhs13545,BestGuess:PAX2_si_HM09(0.7022499609152),T:3506.0(43.86%),B:13765.9(33.72%),P:1e-78

Motif matrix
POACGT
1371.6361090.3661370.846676.658
2315.541451.4841090.366648.61
32159.6961107.89684.144154.264
41865.19273.6261546.14621.036
53.50652.593.5063446.398
6589.0081307.738901.042708.212
72089.57656.0961160.486199.842
8129.7223179.94259.602136.734
91479.5321048.294722.236255.938
101290.208725.742799.368690.682
11564.4661935.312704.706301.516
121977.384210.36592.514725.742

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
Pax2#MA0067.1-10.001642370.781770.8932788GCAATCACAACAGCGTGACT-
ABF1#MA0265.1-10.001876630.8932780.89327811GCAATCACAACAATATCACTTTATACGA-
HAP5#MA0316.110.003218531.53202112GCAATCACAACAACCAATCAGATCCCA-
NFYA#MA0060.150.005637392.6834111GCAATCACAACACTCAGCCAATCAGCGC+
Gfi#MA0038.100.006124432.91523110GCAATCACAACACAAATCACTG+
Pax4#MA0068.180.008376633.98727112GCAATCACAACAGAAAAATTTCCCATACTCCACTCCCCCCCC+
Cebpa#MA0102.100.01076265.12298112GCAATCACAACAGAGATTGCGAAA-
HAP4#MA0315.110.01096445.21904112GCAATCACAACAACCAATCAGAGGCGA+
BAS1#MA0278.180.01411316.71784112GCAATCACAACAGCACAGCCAGAGTCAAGTCAA+
CREB1#MA0018.2-40.01762468.3893218GCAATCACAACATGACGTCA-
CEBPA#MA0102.2-30.02033469.6792919GCAATCACAACAATTGCGAAA-
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