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MacroAPE 1083:ATGGAGGTCGTC,motif943: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!1;1190.932;148.006;192.752;189.31!2;215.125;79.166;194.473;1232.236!3;141.122;75.724;1338.938;165.216!4;228.893;203.078;1163.396;125.633!5;129...")
 
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!10828-111C9;0.637898!10788-110H5;0.640152!10792-110H9;0.219664!10765-110E9;0.632911!10829-111D1;0.593565!10830-111D2;0.505012!10831-111D3;0.817501!10832-111D4;0.36731!10833-111D5;0.744226!10764-110E8;0.838089!10770-110F5;0.717662!10399-106A3;0.460342!10400-106A4;0.882416!10405-106A9;0.797192!10834-111D6;0.916764!10835-111D7;0.571396!10836-111D8;0.594141!10837-111D9;0.364854!10699-109G6;0.449025!10802-111A1;0.313839!10796-110I4;0.404672!10010-101C1;0.916649!10810-111A9;0.738659!10421-106C7;0.908126!10708-109H6;0.800632!12235-129G3;0.851517!12236-129G4;0.886211!12237-129G5;0.873697!10167-103B5;0.634958!10151-102I7;0.130696!10428-106D5;0.0827787!10795-110I3;0.331237!10805-111A4;0.320738!10052-101G7;0.89317!10189-103D9;0.561834!10589-108D4;0.47199!10425-106D2;0.901488!10427-106D4;0.602993!10702-109G9;0.891863!10432-106D9;0.515378!10496-107C1;0.701495!10718-109I7;0.924079!10011-101C2;0.926831!10053-101G8;0.719819!10686-109F2;0.59437!10084-102B3;0.702723!10012-101C3;0.174455!10085-102B4;0.223878!10482-107A5;0.130002!10419-106C5;0.625781!10080-102A8;0.853761!10760-110E4;0.669491!10709-109H7;0.0608949!10710-109H8;0.560446!10703-109H1;0.922248!10719-109I8;0.940854!10642-109A3;0.174711!10177-103C6;0.217612!10164-103B2;0.0674027!10173-103C2;0.101526!10166-103B4;0.250609!10083-102B2;0.173199!10188-103D8;0.145873!10552-107I3;0.202226!10553-107I4;0.706828!10013-101C4;0.624388!10536-107G5;0.691046!10618-108G6;0.854128!10423-106C9;0.296243!10785-110H2;0.253355!12238-129G6;0.417383!12239-129G7;0.294636!12240-129G8;0.42896!10416-106C2;0.0657284!10801-110I9;0.169814!10766-110F1;0.2036!10824-111C5;0.308284!10825-111C6;0.663483!10826-111C7;0.654896!10454-106G4;0.707349!10409-106B4;0.414584!10638-108I8;0.374775!10636-108I6;0.887167!10513-107D9;0.940366!10420-106C6;0.50033!10082-102B1;0.497608!10014-101C5;0.42144!10070-101I7;0.742062!10452-106G2;0.40985!10453-106G3;0.92416!10449-106F8;0.53192!10042-101F6;0.593845!10069-101I6;0.294512!10193-103E4;0.901042!10631-108I1;0.243026!10438-106E6;0.296354!10488-107B2;0.526332!10196-103E7;0.104515!10071-101I8;0.739214!10071-101I8;0.609365!10041-101F5;0.1431!10451-106G1;0.246453!10450-106F9;0.679199!10604-108F1;0.955309!10605-108F2;0.627234!10606-108F3;0.895682!10603-108E9;0.611435!10497-107C2;0.852368!10448-106F7;0.790148!10643-109A4;0.733485!10426-106D3;0.891521!10431-106D8;0.740914!10197-103E8;0.544354!10443-106F2;0.758123!10815-111B5;0.806733!10816-111B6;0.87316!10817-111B7;0.899702!10015-101C6;0.869824!10410-106B5;0.770061!10054-101G9;0.709077!10758-110E2;0.456304!10711-109H9;0.559312!10040-101F4;0.961256!10470-106I2;0.229662!10415-106C1;0.961687!10198-103E9;0.677125!10614-108G2;0.408437!10612-108F9;0.465383!10549-107H9;0.314565!10615-108G3;0.841061!10487-107B1;0.524056!10433-106E1;0.477753!10688-109F4;0.709703!10444-106F3;0.707048!10444-106F3;0.979758!10485-107A8;0.897641!10413-106B8;0.222342!10175-103C4;0.273096!10161-103A8;0.195079!12131-128D7;0.0977605!10624-108H3;0.689235!10712-109I1;0.88939!10205-103F7;0.862665!10206-103F8;0.752334!10207-103F9;0.885232!10050-101G5;0.501038!10051-101G6;0.745614!10016-101C7;0.760418!10046-101G1;0.947432!10778-110G4;0.789183!10633-108I3;0.936322!10818-111B8;0.800175!10819-111B9;0.590654!10820-111C1;0.445388!10484-107A7;0.603708!10808-111A7;0.628564!10169-103B7;0.889578!10153-102I9;0.0528445!13425-144D5;0.103237!13433-144E4;0.812371!13437-144E8;0.570244!11904-125F5;0.363963!11905-125F6;0.481973!10039-101F3;0.170644!10791-110H8;0.167401!10017-101C8;0.143945!10045-101F9;0.132432!10509-107D5;0.184705!10839-111E2;0.231403!10692-109F8;0.998258!10079-102A7;0.694104!10078-102A6;0.888857!10721-110A1;0.731513!10569-108B2;0.493721!10570-108B3;0.55739!10571-108B4;0.222294!10647-109A8;0.351743!10752-110D5;0.474117!10782-110G8;0.844238!10726-110A6;0.53335!10018-101C9;0.123964!10086-102B5;0.661192!10182-103D2;0.141359!10165-103B3;0.107305!10499-107C4;0.18623!10408-106B3;0.367234!10019-101D1;0.597421!10068-101I5;0.0533724!10075-102A3;0.114328!10077-102A5;0.143057!10727-110A7;0.276336!10775-110G1;0.970705!10412-106B7;0.541659!12231-129F8;0.326083!12232-129F9;0.800491!12233-129G1;0.958569!12234-129G2;0.975686!10414-106B9;0.932375!10170-103B8;0.353582!10183-103D3;0.243065!10150-102I6;0.214476!10174-103C3;0.164369!10155-103A2;0.0666123!10038-101F2;0.150176!10838-111E1;0.219398!10759-110E3;0.540511!10514-107E1;0.109043!10465-106H6;0.63795!10691-109F7;0.288573!10843-111E6;0.435857!10844-111E7;0.632599!11747-123G1;0.349286!11748-123G2;0.0990006!11749-123G3;0.360042!11750-123G4;0.264125!11751-123G5;0.665621!11840-124H4;0.530372!11752-123G6;0.490269!11753-123G7;0.549053!11754-123G8;0.423881!11755-123G9;0.293107!11756-123H1;0.159537!11833-124G6;0.154912!11760-123H5;0.743032!11836-124G9;0.158676!11758-123H3;0.325917!11835-124G8;0.455779!11762-123H7;0.550553!11838-124H2;0.571911!11757-123H2;0.610116!11759-123H4;0.121961!11761-123H6;0.378475!11842-124H6;0.333402!11837-124H1;0.46378!10568-108B1;0.38771!13230-141I8;0.268001!13231-141I9;0.83512!10696-109G3;0.693354!10493-107B7;0.889758!10494-107B8;0.652517!10850-111F4;0.695062!10851-111F5;0.633471!10852-111F6;0.441248!10853-111F7;0.496624!10854-111F8;0.383885!10855-111F9;0.355972!10856-111G1;0.704798!10847-111F1;0.153306!10846-111E9;0.288566!10848-111F2;0.0947077!10845-111E8;0.0310509!10857-111G2;0.693381!10858-111G3;0.201771!10156-103A3;0.227582!11901-125F2;0.163168!11902-125F3;0.446479!11903-125F4;0.654114!10689-109F5;0.515911!10648-109A9;0.142285!10784-110H1;0.773686!10744-110C6;0.893042!10772-110F7;0.792372!10474-106I6;0.639243!10600-108E6;0.445334!10684-109E9;0.413269!12226-129F3;0.611977!12227-129F4;0.731403!10508-107D4;0.66333!10539-107G8;0.524366!10607-108F4;0.969321!10555-107I6;0.745885!10774-110F9;0.563958!10637-108I7;0.608152!10663-109C6;0.691315!10728-110A8;0.211722!10729-110A9;0.166062!10430-106D7;0.389014!10730-110B1;0.444142!10813-111B3;0.633566!10812-111B2;0.818686!10037-101F1;0.468589!10172-103C1;0.146322!10163-103B1;0.246501!10076-102A4;0.107084!10073-102A1;0.227583!10036-101E9;0.18395!10195-103E6;0.188734!10277-104E7;0.237406!10434-106E2;0.297565!10550-107I1;0.46411!10545-107H5;0.469376!10544-107H4;0.133012!10704-109H2;0.369635!10510-107D6;0.607454!10558-107I9;0.753411!10020-101D2;0.385321!10732-110B3;0.601973!10049-101G4;0.322595!10698-109G5;0.79562!10437-106E5;0.276164!10417-106C3;0.04224!10035-101E8;0.520384!10171-103B9;0.214772!10157-103A4;0.176149!10034-101E7;0.143005!10072-101I9;0.207305!10199-103F1;0.141715!10200-103F2;0.823118!10697-109G4;0.902564!10723-110A3;0.936003!10179-103C8;0.846503!10160-103A7;0.12589!10180-103C9;0.157614!10162-103A9;0.0725505!10021-101D3;0.0860702!10840-111E3;0.151211!10706-109H4;0.97094!10033-101E6;0.303971!10032-101E5;0.330906!10490-107B4;0.199724!10439-106E7;0.426149!10022-101D4;0.998207!10176-103C5;0.55198!10469-106I1;0.124756!10067-101I4;0.336499!10411-106B6;0.65549!10471-106I3;0.530378!10030-101E3;0.756804!10475-106I7;0.234191!10787-110H4;0.83385!10477-106I9;0.791122!10695-109G2;0.725295!11771-123I7;0.908389!11772-123I8;0.174288!11773-123I9;0.389612!10093-102C3;0.0767953!10442-106F1;0.607889!10442-106F1;0.738168!10201-103F3;0.990112!10639-108I9;0.528174!11843-124H7;0.329735!11841-124H5;0.733337!10693-109F9;0.874621!10436-106E4;0.778358!10483-107A6;0.991229!10282-104F3;0.851087!10023-101D5;0.276913!10066-101I3;0.744211!10065-101I2;0.810591!10800-110I8;0.849293!10610-108F7;0.56784!10841-111E4;0.858118!10541-107H1;0.965246!10842-111E5;0.472166!10562-108A4;0.623959!10024-101D6;0.445871!10064-101I1;0.851989!10609-108F6;0.862862!10048-101G3;0.693449!10781-110G7;0.985985!10181-103D1;0.217699!10159-103A6;0.18417!10056-101H2;0.168317!10737-110B8;0.207355!10025-101D7;0.389947!10044-101F8;0.0463748!10424-106D1;0.0342979!10463-106H4;0.967793!10616-108G4;0.368275!10486-107A9;0.740131!10062-101H8;0.224634!10202-103F4;0.811011!10158-103A5;0.845833!10441-106E9;0.210941!10031-101E4;0.649757!10063-101H9;0.149331!10063-101H9;0.224406!11763-123H8;0.610548!11765-123I1;0.701922!11768-123I4;0.925018!10807-111A6;0.351003!10790-110H7;0.739037!10798-110I6;0.977589!10786-110H3;0.84582!10591-108D6;0.650162!10593-108D8;0.747767!10590-108D5;0.997742!10026-101D8;0.367221!10096-102C6;0.229839!10168-103B6;0.0346768!10154-103A1;0.196193!10209-103G2;0.123424!10061-101H7;0.774626!10027-101D9;0.874736!10043-101F7;0.999138!10783-110G9;0.108028!10028-101E1;0.157696!10060-101H6;0.398462!10203-103F5;0.513093!10059-101H5;0.596262!10047-101G2;0.733906!10029-101E2;0.315179!10058-101H4;0.561382!10418-106C4;0.758634!10492-107B6;0.850363!10694-109G1;0.875998!10797-110I5;0.96689!10057-101H3;0.257607!10100-102D1;0.826498!10055-101H1;0.661273!10204-103F6;0.762129!10191-103E2;0.543688!10563-108A5;0.911382
|name=ATGGAGGTCGTC,motif943,CNhs12639,T:1721.0(50.48%),B:30752.6(41.23%),P:1e-27
|name=ATGGAGGTCGTC,motif943,CNhs12639,T:1721.0(50.48%),B:30752.6(41.23%),P:1e-27
|tomtom_result=RORA_1#MA0071.1;0;0.00696037;3.31313;1;10;ATGGAGGTCGTC;ATCAAGGTCA;+!Gamyb#MA0034.1;-2;0.0078274;3.72584;1;10;ATGGAGGTCGTC;GGCGGTTGTC;-!Macho-1#MA0118.1;-1;0.0110369;5.25356;1;9;ATGGAGGTCGTC;TGGGGGGTC;+!En1#MA0027.1;-1;0.0161339;7.67975;1;11;ATGGAGGTCGTC;AAGTAGTGCCC;+!GCR1#MA0304.1;-1;0.0185906;8.84912;1;8;ATGGAGGTCGTC;TGGAAGCC;+!ECM23#MA0293.1;-1;0.0204251;9.72236;1;11;ATGGAGGTCGTC;TTTAGATCTTT;-
}}
}}

Latest revision as of 14:55, 7 September 2012

Full Name: ATGGAGGTCGTC,motif943,CNhs12639,T:1721.0(50.48%),B:30752.6(41.23%),P:1e-27

Motif matrix
POACGT
11190.932148.006192.752189.31
2215.12579.166194.4731232.236
3141.12275.7241338.938165.216
4228.893203.0781163.396125.633
51295.91380.887165.216178.984
6209.96280.8871239.12191.031
7247.824173.8211113.487185.868
8240.94208.241187.5891084.23
9232.335937.945249.545301.175
10301.175261.592851.895306.338
11154.89153.169192.7521220.189
12191.0311101.44209.962218.567

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
RORA_1#MA0071.100.006960373.31313110ATGGAGGTCGTCATCAAGGTCA+
Gamyb#MA0034.1-20.00782743.72584110ATGGAGGTCGTCGGCGGTTGTC-
Macho-1#MA0118.1-10.01103695.2535619ATGGAGGTCGTCTGGGGGGTC+
En1#MA0027.1-10.01613397.67975111ATGGAGGTCGTCAAGTAGTGCCC+
GCR1#MA0304.1-10.01859068.8491218ATGGAGGTCGTCTGGAAGCC+
ECM23#MA0293.1-10.02042519.72236111ATGGAGGTCGTCTTTAGATCTTT-
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