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MacroAPE 1083:TCATCAGTTCC,motif933: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!1;325.377;2.781;80.649;2372.193!2;175.203;2336.04;266.976;2.781!3;1838.241;2.781;528.39;411.588!4;19.467;97.335;2.781;2661.417!5;2.781;2483.43...")
 
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I8;0.00147947!12182-129A4;0.00049631!12183-129A5;0.000760696!12184-129A6;0.00943058!10809-111A8;0.000423163!10597-108E3;0.127755!10717-109I6;0.661763!10455-106G5;0.826361!10534-107G3;0.0626885!10429-106D6;0.532744!10464-106H5;0.147208!10827-111C8;0.350861!10789-110H6;0.406567!10828-111C9;0.307007!10788-110H5;0.0430186!10792-110H9;0.24417!10765-110E9;0.0491576!10829-111D1;0.0881162!10830-111D2;0.424039!10831-111D3;0.0112901!10832-111D4;0.257369!10833-111D5;0.0860296!10764-110E8;0.0660278!10770-110F5;0.329317!10399-106A3;0.321334!10400-106A4;0.497971!10405-106A9;0.510514!10834-111D6;0.532852!10835-111D7;0.364438!10836-111D8;0.612598!10837-111D9;0.657703!10699-109G6;0.508329!10802-111A1;0.455683!10796-110I4;0.136202!10010-101C1;0.433827!10810-111A9;0.986535!10421-106C7;0.989567!10708-109H6;0.0937937!12235-129G3;0.0884745!12236-129G4;0.545473!12237-129G5;0.193494!10167-103B5;0.929743!10151-102I7;0.556363!10428-106D5;0.732918!10795-110I3;0.932875!10805-111A4;0.356611!10052-101G7;0.576864!10189-103D9;0.150346!10589-108D4;0.224501!10425-106D2;0.51258!10427-106D4;0.062701!10702-109G9;0.181408!10432-106D9;0.593717!10496-107C1;0.788644!10718-109I7;0.103238!10011-101C2;0.301504!10053-101G8;0.510858!10686-109F2;0.00407379!10084-102B3;0.123249!10012-101C3;0.159141!10085-102B4;0.447983!10482-107A5;0.984494!10419-106C5;0.960838!10080-102A8;0.721599!10760-110E4;0.251096!10709-109H7;0.596571!10710-109H8;0.853666!10703-109H1;0.875369!10719-109I8;0.813664!10642-109A3;0.311403!10177-103C6;0.272915!10164-103B2;0.56127!10173-103C2;0.683906!10166-103B4;0.678711!10083-102B2;0.490714!10188-103D8;0.908536!10552-107I3;0.753765!10553-107I4;0.855818!10013-101C4;0.673905!10536-107G5;0.332725!10618-108G6;0.419251!10423-106C9;0.252535!10785-110H2;0.622219!12238-129G6;0.559167!12239-129G7;0.598469!12240-129G8;0.285829!10416-106C2;0.921244!10801-110I9;0.782842!10766-110F1;0.488736!10824-111C5;0.475304!10825-111C6;0.618693!10826-111C7;0.510028!10454-106G4;0.423665!10409-106B4;0.911463!10638-108I8;0.0796046!10636-108I6;0.8799!10513-107D9;0.526247!10420-106C6;0.981916!10082-102B1;0.768751!10014-101C5;0.176697!10070-101I7;0.350303!10452-106G2;0.825364!10453-106G3;0.364243!10449-106F8;0.573846!10042-101F6;0.615018!10069-101I6;0.111896!10193-103E4;0.424356!10631-108I1;0.230305!10438-106E6;0.231025!10488-107B2;0.960814!10196-103E7;0.933386!10071-101I8;0.0751738!10071-101I8;0.311955!10041-101F5;0.897365!10451-106G1;0.570352!10450-106F9;0.773922!10604-108F1;0.615168!10605-108F2;0.899469!10606-108F3;0.844572!10603-108E9;0.739257!10497-107C2;0.899989!10448-106F7;0.989226!10643-109A4;0.464648!10426-106D3;0.243789!10431-106D8;0.955668!10197-103E8;0.487292!10443-106F2;0.235698!10815-111B5;0.0414561!10816-111B6;0.58077!10817-111B7;0.311762!10015-101C6;0.719693!10410-106B5;0.588214!10054-101G9;0.337897!10758-110E2;0.813084!10711-109H9;0.892678!10040-101F4;0.849064!10470-106I2;0.569634!10415-106C1;0.972326!10198-103E9;0.945319!10614-108G2;0.059769!10612-108F9;0.0872536!10549-107H9;0.154256!10615-108G3;0.663681!10487-107B1;0.671297!10433-106E1;0.149959!10688-109F4;0.46311!10444-106F3;0.471194!10444-106F3;0.567798!10485-107A8;0.70542!10413-106B8;0.00715706!10175-103C4;0.180591!10161-103A8;0.344264!12131-128D7;0.505598!10624-108H3;0.181478!10712-109I1;0.578313!10205-103F7;0.252623!10206-103F8;0.168522!10207-103F9;0.101484!10050-101G5;0.558992!10051-101G6;0.0919!10016-101C7;0.10712!10046-101G1;0.128346!10778-110G4;0.142244!10633-108I3;0.118785!10818-111B8;0.497472!10819-111B9;0.862535!10820-111C1;0.827137!10484-107A7;0.87714!10808-111A7;0.977201!10169-103B7;0.7178!10153-102I9;0.734655!13425-144D5;0.722701!13433-144E4;0.669864!13437-144E8;0.630782!11904-125F5;0.472163!11905-125F6;0.00346527!10039-101F3;0.129356!10791-110H8;0.445198!10017-101C8;0.746878!10045-101F9;0.256239!10509-107D5;0.261904!10839-111E2;0.0451492!10692-109F8;0.900695!10079-102A7;0.31428!10078-102A6;0.108704!10721-110A1;0.107628!10569-108B2;0.51043!10570-108B3;0.175095!10571-108B4;0.0495337!10647-109A8;0.0947405!10752-110D5;0.0625588!10782-110G8;0.544171!10726-110A6;0.35293!10018-101C9;0.000697863!10086-102B5;0.611103!10182-103D2;0.209839!10165-103B3;0.365743!10499-107C4;0.393969!10408-106B3;0.443769!10019-101D1;0.32672!10068-101I5;0.362642!10075-102A3;0.195816!10077-102A5;0.726894!10727-110A7;3.01052e-06!10775-110G1;0.990192!10412-106B7;0.0571229!12231-129F8;0.426152!12232-129F9;0.279864!12233-129G1;0.276034!12234-129G2;0.419245!10414-106B9;0.257713!10170-103B8;0.78416!10183-103D3;0.541775!10150-102I6;0.529877!10174-103C3;0.539942!10155-103A2;0.401623!10038-101F2;0.424135!10838-111E1;0.207208!10759-110E3;0.387891!10514-107E1;0.0296957!10465-106H6;0.226615!10691-109F7;0.759025!10843-111E6;0.263031!10844-111E7;0.902312!11747-123G1;0.349565!11748-123G2;0.206244!11749-123G3;0.154937!11750-123G4;0.119577!11751-123G5;0.483606!11840-124H4;0.579203!11752-123G6;0.595873!11753-123G7;0.114866!11754-123G8;0.906424!11755-123G9;0.0146375!11756-123H1;0.0495826!11833-124G6;0.137102!11760-123H5;0.313934!11836-124G9;0.275107!11758-123H3;0.00933314!11835-124G8;0.117873!11762-123H7;0.162137!11838-124H2;0.383686!11757-123H2;0.352742!11759-123H4;0.366126!11761-123H6;0.258952!11842-124H6;0.304314!11837-124H1;0.149482!10568-108B1;0.09412!13230-141I8;0.0599277!13231-141I9;0.302164!10696-109G3;0.107057!10493-107B7;0.112172!10494-107B8;0.54785!10850-111F4;0.984855!10851-111F5;0.929146!10852-111F6;0.0270124!10853-111F7;0.00662191!10854-111F8;0.383766!10855-111F9;0.0192909!10856-111G1;0.0827715!10847-111F1;0.112276!10846-111E9;0.109516!10848-111F2;0.491003!10845-111E8;0.0822457!10857-111G2;0.998084!10858-111G3;0.145686!10156-103A3;0.0684965!11901-125F2;0.600981!11902-125F3;0.00488372!11903-125F4;0.000692976!10689-109F5;0.00611185!10648-109A9;0.569114!10784-110H1;0.281402!10744-110C6;0.246627!10772-110F7;0.450651!10474-106I6;0.331126!10600-108E6;0.0803404!10684-109E9;0.26169!12226-129F3;0.335778!12227-129F4;0.228952!10508-107D4;0.49757!10539-107G8;0.644748!10607-108F4;0.180124!10555-107I6;0.587624!10774-110F9;0.866265!10637-108I7;0.923321!10663-109C6;0.653737!10728-110A8;0.234039!10729-110A9;0.803699!10430-106D7;0.366444!10730-110B1;0.202691!10813-111B3;0.525951!10812-111B2;0.0809559!10037-101F1;0.00178687!10172-103C1;0.366412!10163-103B1;0.319944!10076-102A4;0.629128!10073-102A1;0.284307!10036-101E9;0.749468!10195-103E6;0.256977!10277-104E7;0.332681!10434-106E2;0.0247876!10550-107I1;0.0815919!10545-107H5;0.534652!10544-107H4;0.977444!10704-109H2;0.728596!10510-107D6;0.70724!10558-107I9;0.287154!10020-101D2;0.108234!10732-110B3;0.171702!10049-101G4;0.286254!10698-109G5;0.119682!10437-106E5;0.164633!10417-106C3;0.15609!10035-101E8;0.833173!10171-103B9;0.380107!10157-103A4;0.359624!10034-101E7;0.717224!10072-101I9;0.351084!10199-103F1;0.912857!10200-103F2;0.785893!10697-109G4;0.344307!10723-110A3;0.592922!10179-103C8;0.0648884!10160-103A7;0.207625!10180-103C9;0.0615099!10162-103A9;0.434587!10021-101D3;0.524952!10840-111E3;0.643182!10706-109H4;0.0602158!10033-101E6;0.291573!10032-101E5;0.349228!10490-107B4;0.342776!10439-106E7;0.59592!10022-101D4;0.426109!10176-103C5;0.358944!10469-106I1;0.736836!10067-101I4;0.595313!10411-106B6;0.623839!10471-106I3;0.319223!10030-101E3;0.601863!10475-106I7;0.872888!10787-110H4;0.480375!10477-106I9;0.235673!10695-109G2;0.94287!11771-123I7;0.15778!11772-123I8;0.809723!11773-123I9;0.774639!10093-102C3;0.713811!10442-106F1;0.00647142!10442-106F1;0.903692!10201-103F3;0.896435!10639-108I9;0.155614!11843-124H7;0.2794!11841-124H5;0.356403!10693-109F9;0.218045!10436-106E4;0.898124!10483-107A6;0.771538!10282-104F3;0.421906!10023-101D5;0.269859!10066-101I3;0.414368!10065-101I2;0.197834!10800-110I8;0.541651!10610-108F7;0.591331!10841-111E4;0.992313!10541-107H1;0.696329!10842-111E5;0.492297!10562-108A4;0.337949!10024-101D6;0.824456!10064-101I1;0.52042!10609-108F6;0.499307!10048-101G3;0.611925!10781-110G7;0.269695!10181-103D1;0.958302!10159-103A6;0.545539!10056-101H2;0.681875!10737-110B8;0.168765!10025-101D7;0.104648!10044-101F8;0.0386375!10424-106D1;0.784503!10463-106H4;0.00661242!10616-108G4;0.322894!10486-107A9;0.52678!10062-101H8;0.222293!10202-103F4;0.305504!10158-103A5;0.684745!10441-106E9;0.35202!10031-101E4;0.559233!10063-101H9;0.239641!10063-101H9;0.680123!11763-123H8;0.330822!11765-123I1;0.0961012!11768-123I4;0.0538563!10807-111A6;0.283142!10790-110H7;0.918771!10798-110I6;0.551385!10786-110H3;0.264111!10591-108D6;0.947726!10593-108D8;0.463689!10590-108D5;0.9419!10026-101D8;0.696777!10096-102C6;0.0448715!10168-103B6;0.342953!10154-103A1;0.442156!10209-103G2;0.498003!10061-101H7;0.493169!10027-101D9;0.191093!10043-101F7;0.0577077!10783-110G9;0.248533!10028-101E1;0.0139754!10060-101H6;0.517299!10203-103F5;0.279342!10059-101H5;0.501146!10047-101G2;0.303413!10029-101E2;0.207034!10058-101H4;0.295677!10418-106C4;0.260072!10492-107B6;0.823566!10694-109G1;0.329239!10797-110I5;0.647318!10057-101H3;0.420013!10100-102D1;0.106532!10055-101H1;0.208328!10204-103F6;0.484866!10191-103E2;0.813243!10563-108A5;0.570627
|name=TCATCAGTTCC,motif933,CNhs13490,T:2781.0(58.61%),B:40061.5(50.72%),P:1e-27
|name=TCATCAGTTCC,motif933,CNhs13490,T:2781.0(58.61%),B:40061.5(50.72%),P:1e-27
|tomtom_result=zen#MA0256.1;0;0.0104417;4.97024;1;7;TCATCAGTTCC;TCATTAG;-!ovo#MA0126.1;-3;0.0106909;5.08886;1;8;TCATCAGTTCC;ACTGTTACT;-!prd#MA0239.1;-3;0.0106909;5.08886;1;8;TCATCAGTTCC;ACTGTTACT;-!Myf#MA0055.1;-1;0.0130741;6.22329;1;10;TCATCAGTTCC;CAGCAGCTGCTG;-!Pax5#MA0014.1;7;0.0171517;8.16422;1;11;TCATCAGTTCC;CCGCTACGCTTCAGTGCTCT;-!DOT6#MA0351.1;9;0.019388;9.22871;1;11;TCATCAGTTCC;TTCTGCACCTCATCGCATCCT;+
}}
}}

Latest revision as of 14:57, 7 September 2012

Full Name: TCATCAGTTCC,motif933,CNhs13490,T:2781.0(58.61%),B:40061.5(50.72%),P:1e-27

Motif matrix
POACGT
1325.3772.78180.6492372.193
2175.2032336.04266.9762.781
31838.2412.781528.39411.588
419.46797.3352.7812661.417
52.7812483.433175.203119.583
62669.7638.93469.5252.781
72.7812.7812772.6572.781
819.467108.4592.7812650.293
92.78197.3352.7812678.103
10734.1841930.014114.0212.781
112.7812433.375342.0632.781

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
zen#MA0256.100.01044174.9702417TCATCAGTTCCTCATTAG-
ovo#MA0126.1-30.01069095.0888618TCATCAGTTCCACTGTTACT-
prd#MA0239.1-30.01069095.0888618TCATCAGTTCCACTGTTACT-
Myf#MA0055.1-10.01307416.22329110TCATCAGTTCCCAGCAGCTGCTG-
Pax5#MA0014.170.01715178.16422111TCATCAGTTCCCCGCTACGCTTCAGTGCTCT-
DOT6#MA0351.190.0193889.22871111TCATCAGTTCCTTCTGCACCTCATCGCATCCT+
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