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MacroAPE 1083:9-HGASWSVGYG: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!1;358.54;238.42;0.91;312.13!2;0.91;180.18;490.49;238.42!3;532.35;0.91;0.91;375.83!4;62.79;397.67;321.23;127.4!5;406.77;0.91;0.91;501.41!6;97.3...")
 
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-129A4;0.944053!12183-129A5;0.990072!12184-129A6;0.916819!10809-111A8;0.832924!10597-108E3;0.668409!10717-109I6;0.14584!10455-106G5;0.871345!10534-107G3;0.917422!10429-106D6;0.737333!10464-106H5;0.237312!10827-111C8;0.885917!10789-110H6;0.738792!10828-111C9;0.317901!10788-110H5;0.517926!10792-110H9;0.674025!10765-110E9;0.702925!10829-111D1;0.81661!10830-111D2;0.751581!10831-111D3;0.809169!10832-111D4;0.691369!10833-111D5;0.7018!10764-110E8;0.819555!10770-110F5;0.656068!10399-106A3;0.835811!10400-106A4;0.896319!10405-106A9;0.761902!10834-111D6;0.984964!10835-111D7;0.657491!10836-111D8;0.357257!10837-111D9;0.390486!10699-109G6;0.968105!10802-111A1;0.368222!10796-110I4;0.601239!10010-101C1;0.286349!10810-111A9;0.799362!10421-106C7;0.772285!10708-109H6;0.972761!12235-129G3;0.633209!12236-129G4;0.478753!12237-129G5;0.841616!10167-103B5;0.475281!10151-102I7;0.149635!10428-106D5;0.187602!10795-110I3;0.923793!10805-111A4;0.243554!10052-101G7;0.0401025!10189-103D9;0.679787!10589-108D4;0.874518!10425-106D2;0.421094!10427-106D4;0.639538!10702-109G9;0.525095!10432-106D9;0.202571!10496-107C1;0.726188!10718-109I7;0.96778!10011-101C2;0.771359!10053-101G8;0.807323!10686-109F2;0.336467!10084-102B3;0.495183!10012-101C3;0.322903!10085-102B4;0.325229!10482-107A5;0.0695846!10419-106C5;0.21519!10080-102A8;0.287422!10760-110E4;0.684645!10709-109H7;0.49817!10710-109H8;0.143264!10703-109H1;0.716715!10719-109I8;0.101707!10642-109A3;0.0402054!10177-103C6;0.0779822!10164-103B2;0.192089!10173-103C2;0.192947!10166-103B4;0.105235!10083-102B2;0.0711178!10188-103D8;0.142533!10552-107I3;0.273698!10553-107I4;0.874586!10013-101C4;0.13199!10536-107G5;0.723035!10618-108G6;0.212816!10423-106C9;0.833665!10785-110H2;0.456919!12238-129G6;0.323966!12239-129G7;0.84686!12240-129G8;0.0213572!10416-106C2;0.561296!10801-110I9;0.578291!10766-110F1;0.926482!10824-111C5;0.683139!10825-111C6;0.828089!10826-111C7;0.769001!10454-106G4;0.841323!10409-106B4;0.771722!10638-108I8;0.871975!10636-108I6;0.893592!10513-107D9;0.968435!10420-106C6;0.166495!10082-102B1;0.103314!10014-101C5;0.175721!10070-101I7;0.441811!10452-106G2;0.72316!10453-106G3;0.111533!10449-106F8;0.453561!10042-101F6;0.576963!10069-101I6;0.413778!10193-103E4;0.531366!10631-108I1;0.328317!10438-106E6;0.686713!10488-107B2;0.126404!10196-103E7;0.233053!10071-101I8;0.349489!10071-101I8;0.995968!10041-101F5;0.0299004!10451-106G1;0.814872!10450-106F9;0.655476!10604-108F1;0.339247!10605-108F2;0.301398!10606-108F3;0.719057!10603-108E9;0.1885!10497-107C2;0.245612!10448-106F7;0.85177!10643-109A4;0.792111!10426-106D3;0.793126!10431-106D8;0.642484!10197-103E8;0.706355!10443-106F2;0.311689!10815-111B5;0.787123!10816-111B6;0.812641!10817-111B7;0.598053!10015-101C6;0.826424!10410-106B5;0.491452!10054-101G9;0.433492!10758-110E2;0.810044!10711-109H9;0.615205!10040-101F4;0.253519!10470-106I2;0.219499!10415-106C1;0.586669!10198-103E9;0.590582!10614-108G2;0.64994!10612-108F9;0.590374!10549-107H9;0.35844!10615-108G3;0.479026!10487-107B1;0.0740511!10433-106E1;0.718955!10688-109F4;0.0529202!10444-106F3;0.107539!10444-106F3;0.215614!10485-107A8;0.21241!10413-106B8;0.531221!10175-103C4;0.841428!10161-103A8;0.305677!12131-128D7;0.309206!10624-108H3;0.0352034!10712-109I1;0.63065!10205-103F7;0.461358!10206-103F8;0.840575!10207-103F9;0.78889!10050-101G5;0.392934!10051-101G6;0.9761!10016-101C7;0.976354!10046-101G1;0.945219!10778-110G4;0.335004!10633-108I3;0.249995!10818-111B8;0.137697!10819-111B9;0.554638!10820-111C1;0.444492!10484-107A7;0.592905!10808-111A7;0.0263372!10169-103B7;0.856349!10153-102I9;0.260184!13425-144D5;0.237762!13433-144E4;0.681022!13437-144E8;0.530105!11904-125F5;0.508698!11905-125F6;0.0589177!10039-101F3;0.0111794!10791-110H8;0.19237!10017-101C8;0.756924!10045-101F9;0.338821!10509-107D5;0.465567!10839-111E2;0.0936628!10692-109F8;0.783779!10079-102A7;0.421783!10078-102A6;0.658184!10721-110A1;0.427942!10569-108B2;0.780411!10570-108B3;0.00231007!10571-108B4;1.61083e-05!10647-109A8;0.00246549!10752-110D5;0.406025!10782-110G8;0.956981!10726-110A6;0.023458!10018-101C9;0.548312!10086-102B5;0.222474!10182-103D2;0.481663!10165-103B3;0.448818!10499-107C4;0.406681!10408-106B3;0.605935!10019-101D1;0.970881!10068-101I5;0.920651!10075-102A3;0.288069!10077-102A5;0.982747!10727-110A7;0.746018!10775-110G1;0.901735!10412-106B7;0.775952!12231-129F8;0.0515818!12232-129F9;0.263806!12233-129G1;0.544551!12234-129G2;0.962478!10414-106B9;0.435839!10170-103B8;0.125017!10183-103D3;0.201611!10150-102I6;0.24172!10174-103C3;0.221008!10155-103A2;0.552309!10038-101F2;0.412937!10838-111E1;0.482685!10759-110E3;0.00187982!10514-107E1;0.889185!10465-106H6;0.470962!10691-109F7;0.310156!10843-111E6;0.272015!10844-111E7;0.0809215!11747-123G1;0.0427442!11748-123G2;0.00313548!11749-123G3;0.124332!11750-123G4;0.00979994!11751-123G5;0.0781943!11840-124H4;0.055095!11752-123G6;0.077696!11753-123G7;0.01358!11754-123G8;0.435123!11755-123G9;0.022202!11756-123H1;0.000976503!11833-124G6;0.00387229!11760-123H5;0.0663624!11836-124G9;0.00710054!11758-123H3;0.0110534!11835-124G8;0.00362463!11762-123H7;0.0483189!11838-124H2;0.00946358!11757-123H2;0.00891629!11759-123H4;0.00236405!11761-123H6;0.066806!11842-124H6;0.0143916!11837-124H1;0.262941!10568-108B1;0.0488084!13230-141I8;0.332873!13231-141I9;0.260729!10696-109G3;0.276076!10493-107B7;0.3945!10494-107B8;0.418724!10850-111F4;0.671477!10851-111F5;0.275413!10852-111F6;0.192844!10853-111F7;0.029511!10854-111F8;0.165954!10855-111F9;0.461633!10856-111G1;0.018884!10847-111F1;0.0144234!10846-111E9;0.328829!10848-111F2;0.0994854!10845-111E8;0.0621109!10857-111G2;0.796593!10858-111G3;0.457963!10156-103A3;0.140664!11901-125F2;0.192043!11902-125F3;0.241016!11903-125F4;0.185158!10689-109F5;0.400338!10648-109A9;0.6711!10784-110H1;0.178308!10744-110C6;0.999662!10772-110F7;0.607011!10474-106I6;0.566392!10600-108E6;0.336396!10684-109E9;0.642639!12226-129F3;0.682653!12227-129F4;0.519695!10508-107D4;0.274181!10539-107G8;0.0147885!10607-108F4;0.154334!10555-107I6;0.261987!10774-110F9;0.0351558!10637-108I7;0.675062!10663-109C6;0.000147629!10728-110A8;0.0159441!10729-110A9;0.00920854!10430-106D7;0.350007!10730-110B1;0.259995!10813-111B3;0.653811!10812-111B2;0.380719!10037-101F1;0.00529442!10172-103C1;0.19847!10163-103B1;0.2292!10076-102A4;0.241091!10073-102A1;0.237781!10036-101E9;0.0219758!10195-103E6;0.228611!10277-104E7;0.239183!10434-106E2;0.430123!10550-107I1;0.965782!10545-107H5;0.550206!10544-107H4;0.957948!10704-109H2;0.876301!10510-107D6;0.990196!10558-107I9;0.0303464!10020-101D2;0.00798611!10732-110B3;0.622296!10049-101G4;0.674736!10698-109G5;0.174858!10437-106E5;0.872537!10417-106C3;0.406335!10035-101E8;0.102978!10171-103B9;0.250689!10157-103A4;0.285798!10034-101E7;0.215609!10072-101I9;0.221439!10199-103F1;0.0142913!10200-103F2;0.249148!10697-109G4;0.897146!10723-110A3;0.0008062!10179-103C8;0.624848!10160-103A7;0.161061!10180-103C9;0.19483!10162-103A9;0.493947!10021-101D3;0.202163!10840-111E3;0.87736!10706-109H4;0.455816!10033-101E6;0.107135!10032-101E5;0.500831!10490-107B4;0.236562!10439-106E7;0.786384!10022-101D4;0.716801!10176-103C5;0.768679!10469-106I1;0.148113!10067-101I4;0.0323295!10411-106B6;0.856629!10471-106I3;0.834868!10030-101E3;0.402722!10475-106I7;0.61234!10787-110H4;0.21199!10477-106I9;0.949276!10695-109G2;0.0432585!11771-123I7;0.951027!11772-123I8;0.557817!11773-123I9;0.686024!10093-102C3;0.189416!10442-106F1;0.398803!10442-106F1;0.173717!10201-103F3;0.169534!10639-108I9;0.855067!11843-124H7;0.0168264!11841-124H5;0.620835!10693-109F9;0.283573!10436-106E4;0.579779!10483-107A6;0.94963!10282-104F3;0.727868!10023-101D5;0.339271!10066-101I3;0.473941!10065-101I2;0.947074!10800-110I8;0.914472!10610-108F7;0.219084!10841-111E4;0.0316839!10541-107H1;0.643562!10842-111E5;0.149742!10562-108A4;0.0126898!10024-101D6;0.846812!10064-101I1;0.560554!10609-108F6;0.480201!10048-101G3;0.501007!10781-110G7;0.975863!10181-103D1;0.189667!10159-103A6;0.496591!10056-101H2;0.4608!10737-110B8;0.373052!10025-101D7;0.891962!10044-101F8;0.699418!10424-106D1;0.661708!10463-106H4;0.895365!10616-108G4;0.204872!10486-107A9;0.576385!10062-101H8;0.450599!10202-103F4;0.898719!10158-103A5;0.546956!10441-106E9;0.469101!10031-101E4;0.00292573!10063-101H9;0.211945!10063-101H9;0.0148278!11763-123H8;0.870492!11765-123I1;0.0271559!11768-123I4;0.0843362!10807-111A6;0.00954134!10790-110H7;0.661521!10798-110I6;0.579796!10786-110H3;0.810772!10591-108D6;0.834917!10593-108D8;0.739053!10590-108D5;0.157708!10026-101D8;0.876968!10096-102C6;0.163745!10168-103B6;0.856289!10154-103A1;0.482646!10209-103G2;0.269758!10061-101H7;0.695198!10027-101D9;0.909157!10043-101F7;0.113037!10783-110G9;0.0943206!10028-101E1;0.936525!10060-101H6;0.826182!10203-103F5;0.889445!10059-101H5;0.717677!10047-101G2;0.958857!10029-101E2;0.569216!10058-101H4;0.35466!10418-106C4;0.710982!10492-107B6;0.230263!10694-109G1;0.49741!10797-110I5;0.188852!10057-101H3;0.466749!10100-102D1;0.614412!10055-101H1;0.971903!10204-103F6;0.851109!10191-103E2;0.905788!10563-108A5;0.778842
|name=9-HGASWSVGYG,CNhs11049,BestGuess:EGR3_f1_HM09(0.70241249964471),T:910.0(37.05%),B:11649.9(25.90%),P:1e-33
|name=9-HGASWSVGYG,CNhs11049,BestGuess:EGR3_f1_HM09(0.70241249964471),T:910.0(37.05%),B:11649.9(25.90%),P:1e-33
|tomtom_result=YGR067C#MA0425.1;0;6.17935e-05;0.0294137;0.0588274;10;AGACTCGGCG;TGAAAAAGTGGGGT;-!STP2#MA0395.1;-1;0.00175791;0.836764;0.836764;9;AGACTCGGCG;TGATCGGCGCCGCACGACGA;+!RSC3#MA0374.1;-5;0.0038312;1.82365;0.99637;5;AGACTCGGCG;CCGCGCG;-!IME1#MA0320.1;-3;0.00574291;2.73363;0.99637;7;AGACTCGGCG;CTCGGCGG;-!UGA3#MA0410.1;-5;0.00574291;2.73363;0.99637;5;AGACTCGGCG;CGGCGGGA;+!MGA1#MA0336.1;-1;0.00627964;2.98911;0.99637;9;AGACTCGGCG;TTTAGAGTGTTCTATAGTCCT;-!Trl#MA0205.1;-1;0.00983156;4.67982;1;9;AGACTCGGCG;GAGAGAGCAA;-!Klf4#MA0039.2;-4;0.0122085;5.81124;1;6;AGACTCGGCG;TGGGTGGGGC;+!DAL82#MA0291.1;-2;0.0142026;6.76043;1;8;AGACTCGGCG;AATGTGCGC;+!Egr1#MA0162.1;0;0.0151108;7.19273;1;10;AGACTCGGCG;TGCGTGGGCGT;+!RTG3#MA0376.1;-1;0.0173804;8.27308;1;9;AGACTCGGCG;GACTAAGCACGTGCTAATAT;-!UME6#MA0412.1;-4;0.0198246;9.43652;1;6;AGACTCGGCG;TCGGCGGCTAATT;+
}}
}}

Latest revision as of 11:59, 7 September 2012

Full Name: 9-HGASWSVGYG,CNhs11049,BestGuess:EGR3_f1_HM09(0.70241249964471),T:910.0(37.05%),B:11649.9(25.90%),P:1e-33

Motif matrix
POACGT
1358.54238.420.91312.13
20.91180.18490.49238.42
3532.350.910.91375.83
462.79397.67321.23127.4
5406.770.910.91501.41
697.37384.93374.0153.69
7259.35203.84294.84151.97
80.910.91907.270.91
90.91504.140.91404.04
100.910.91907.270.91

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
YGR067C#MA0425.106.17935e-050.02941370.058827410AGACTCGGCGTGAAAAAGTGGGGT-
STP2#MA0395.1-10.001757910.8367640.8367649AGACTCGGCGTGATCGGCGCCGCACGACGA+
RSC3#MA0374.1-50.00383121.823650.996375AGACTCGGCGCCGCGCG-
IME1#MA0320.1-30.005742912.733630.996377AGACTCGGCGCTCGGCGG-
UGA3#MA0410.1-50.005742912.733630.996375AGACTCGGCGCGGCGGGA+
MGA1#MA0336.1-10.006279642.989110.996379AGACTCGGCGTTTAGAGTGTTCTATAGTCCT-
Trl#MA0205.1-10.009831564.6798219AGACTCGGCGGAGAGAGCAA-
Klf4#MA0039.2-40.01220855.8112416AGACTCGGCGTGGGTGGGGC+
DAL82#MA0291.1-20.01420266.7604318AGACTCGGCGAATGTGCGC+
Egr1#MA0162.100.01511087.19273110AGACTCGGCGTGCGTGGGCGT+
RTG3#MA0376.1-10.01738048.2730819AGACTCGGCGGACTAAGCACGTGCTAATAT-
UME6#MA0412.1-40.01982469.4365216AGACTCGGCGTCGGCGGCTAATT+
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