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MacroAPE 1083:TCGCGCYG,motif706: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!1;96.066;0.593;169.598;326.743!2;0.593;511.166;80.648;0.593!3;0.593;0.593;591.221;0.593!4;24.313;488.039;58.114;22.534!5;110.891;0.593;370.625...")
 
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H6;0.352591!10828-111C9;0.967901!10788-110H5;0.652848!10792-110H9;0.314668!10765-110E9;0.414024!10829-111D1;0.852489!10830-111D2;0.316128!10831-111D3;0.541878!10832-111D4;0.184503!10833-111D5;0.249947!10764-110E8;0.254084!10770-110F5;0.246417!10399-106A3;0.880028!10400-106A4;0.315516!10405-106A9;0.385472!10834-111D6;0.333882!10835-111D7;0.275134!10836-111D8;0.412932!10837-111D9;0.125453!10699-109G6;0.359298!10802-111A1;0.284958!10796-110I4;0.628529!10010-101C1;0.259417!10810-111A9;0.487336!10421-106C7;0.253948!10708-109H6;0.600824!12235-129G3;0.566248!12236-129G4;0.991871!12237-129G5;0.909103!10167-103B5;0.835504!10151-102I7;0.532128!10428-106D5;0.80037!10795-110I3;0.743837!10805-111A4;0.33684!10052-101G7;0.139094!10189-103D9;0.630047!10589-108D4;0.595533!10425-106D2;0.366624!10427-106D4;0.794539!10702-109G9;0.256204!10432-106D9;0.418611!10496-107C1;0.536713!10718-109I7;0.294871!10011-101C2;0.826626!10053-101G8;0.660902!10686-109F2;0.724993!10084-102B3;0.821911!10012-101C3;0.708311!10085-102B4;0.686814!10482-107A5;0.514399!10419-106C5;0.446197!10080-102A8;0.719646!10760-110E4;0.736862!10709-109H7;0.349132!10710-109H8;0.401184!10703-109H1;0.0758958!10719-109I8;0.137086!10642-109A3;0.143905!10177-103C6;0.232512!10164-103B2;0.449166!10173-103C2;0.657805!10166-103B4;0.475734!10083-102B2;0.666404!10188-103D8;0.578317!10552-107I3;0.685264!10553-107I4;0.21777!10013-101C4;0.070795!10536-107G5;0.527728!10618-108G6;0.65409!10423-106C9;0.0808005!10785-110H2;0.0513359!12238-129G6;0.130824!12239-129G7;0.595491!12240-129G8;0.67713!10416-106C2;0.494112!10801-110I9;0.233678!10766-110F1;0.922005!10824-111C5;0.697318!10825-111C6;0.2578!10826-111C7;0.262914!10454-106G4;0.313161!10409-106B4;0.338755!10638-108I8;0.483086!10636-108I6;0.603356!10513-107D9;0.628897!10420-106C6;0.18105!10082-102B1;0.282137!10014-101C5;0.507657!10070-101I7;0.4746!10452-106G2;0.921476!10453-106G3;0.0954057!10449-106F8;0.0962275!10042-101F6;0.0962133!10069-101I6;0.771579!10193-103E4;0.603585!10631-108I1;0.468547!10438-106E6;0.269816!10488-107B2;0.225126!10196-103E7;0.389671!10071-101I8;0.244007!10071-101I8;0.870659!10041-101F5;0.385973!10451-106G1;0.996833!10450-106F9;0.273524!10604-108F1;0.245783!10605-108F2;0.264977!10606-108F3;0.439982!10603-108E9;0.336426!10497-107C2;0.382201!10448-106F7;0.818568!10643-109A4;0.792411!10426-106D3;0.790339!10431-106D8;0.253025!10197-103E8;0.370941!10443-106F2;0.299813!10815-111B5;0.709864!10816-111B6;0.357753!10817-111B7;0.259814!10015-101C6;0.371783!10410-106B5;0.384251!10054-101G9;0.726653!10758-110E2;0.907248!10711-109H9;0.699103!10040-101F4;0.757363!10470-106I2;0.706841!10415-106C1;0.0861832!10198-103E9;0.151139!10614-108G2;0.492873!10612-108F9;0.641557!10549-107H9;0.47771!10615-108G3;0.270616!10487-107B1;0.512702!10433-106E1;0.376757!10688-109F4;0.923695!10444-106F3;0.331682!10444-106F3;0.240665!10485-107A8;0.211892!10413-106B8;0.336402!10175-103C4;0.875408!10161-103A8;0.397397!12131-128D7;0.662189!10624-108H3;0.437665!10712-109I1;0.453724!10205-103F7;0.0905246!10206-103F8;0.463865!10207-103F9;0.302768!10050-101G5;0.785257!10051-101G6;0.570604!10016-101C7;0.350927!10046-101G1;0.337319!10778-110G4;0.760673!10633-108I3;0.288016!10818-111B8;0.139268!10819-111B9;0.415877!10820-111C1;0.423363!10484-107A7;0.39249!10808-111A7;0.907693!10169-103B7;0.456551!10153-102I9;0.514837!13425-144D5;0.786287!13433-144E4;0.0597237!13437-144E8;0.0297189!11904-125F5;0.0264073!11905-125F6;0.996961!10039-101F3;0.902097!10791-110H8;0.712486!10017-101C8;0.540742!10045-101F9;0.159742!10509-107D5;0.736419!10839-111E2;0.575995!10692-109F8;0.763814!10079-102A7;0.208899!10078-102A6;0.413209!10721-110A1;0.425601!10569-108B2;0.865486!10570-108B3;0.202692!10571-108B4;0.135809!10647-109A8;0.226356!10752-110D5;0.649786!10782-110G8;0.804705!10726-110A6;0.775141!10018-101C9;0.212785!10086-102B5;0.137093!10182-103D2;0.968262!10165-103B3;0.399504!10499-107C4;0.81798!10408-106B3;0.741621!10019-101D1;0.937491!10068-101I5;0.471543!10075-102A3;0.801727!10077-102A5;0.32299!10727-110A7;0.480917!10775-110G1;0.796074!10412-106B7;0.697604!12231-129F8;0.338092!12232-129F9;0.935506!12233-129G1;0.86541!12234-129G2;0.924487!10414-106B9;0.912409!10170-103B8;0.27387!10183-103D3;0.600013!10150-102I6;0.571624!10174-103C3;0.699292!10155-103A2;0.659227!10038-101F2;0.828624!10838-111E1;0.76654!10759-110E3;0.0721975!10514-107E1;0.472628!10465-106H6;0.82051!10691-109F7;0.608592!10843-111E6;0.057269!10844-111E7;0.101111!11747-123G1;0.122646!11748-123G2;0.316596!11749-123G3;0.204739!11750-123G4;0.269046!11751-123G5;0.195277!11840-124H4;0.276117!11752-123G6;0.312195!11753-123G7;0.0947822!11754-123G8;0.105499!11755-123G9;0.23529!11756-123H1;0.193713!11833-124G6;0.283066!11760-123H5;0.274017!11836-124G9;0.142812!11758-123H3;0.27711!11835-124G8;0.164834!11762-123H7;0.382226!11838-124H2;0.302766!11757-123H2;0.455974!11759-123H4;0.581484!11761-123H6;0.086124!11842-124H6;0.0941554!11837-124H1;0.0688516!10568-108B1;0.518143!13230-141I8;0.708107!13231-141I9;0.385227!10696-109G3;0.319173!10493-107B7;0.506672!10494-107B8;0.200742!10850-111F4;0.412935!10851-111F5;0.540632!10852-111F6;0.177245!10853-111F7;0.332178!10854-111F8;0.632395!10855-111F9;0.278768!10856-111G1;0.428289!10847-111F1;0.604673!10846-111E9;0.22346!10848-111F2;0.493764!10845-111E8;0.973117!10857-111G2;0.432231!10858-111G3;0.626544!10156-103A3;0.203298!11901-125F2;0.712884!11902-125F3;0.332763!11903-125F4;0.617301!10689-109F5;0.760271!10648-109A9;0.48334!10784-110H1;0.501438!10744-110C6;0.817924!10772-110F7;0.687274!10474-106I6;0.341042!10600-108E6;0.238162!10684-109E9;0.136975!12226-129F3;0.751782!12227-129F4;0.705254!10508-107D4;0.589664!10539-107G8;0.286017!10607-108F4;0.249451!10555-107I6;0.415469!10774-110F9;0.175431!10637-108I7;0.300352!10663-109C6;0.295402!10728-110A8;0.252772!10729-110A9;0.269557!10430-106D7;0.621928!10730-110B1;0.245047!10813-111B3;0.600736!10812-111B2;0.813537!10037-101F1;0.679595!10172-103C1;0.622452!10163-103B1;0.327928!10076-102A4;0.662006!10073-102A1;0.596187!10036-101E9;0.403952!10195-103E6;0.627243!10277-104E7;0.630601!10434-106E2;0.226846!10550-107I1;0.698396!10545-107H5;0.170861!10544-107H4;0.508775!10704-109H2;0.347982!10510-107D6;0.647855!10558-107I9;0.52067!10020-101D2;0.0421587!10732-110B3;0.623371!10049-101G4;0.419874!10698-109G5;0.207337!10437-106E5;0.197108!10417-106C3;0.2899!10035-101E8;0.387624!10171-103B9;0.647453!10157-103A4;0.602587!10034-101E7;0.658339!10072-101I9;0.665372!10199-103F1;0.377437!10200-103F2;0.163417!10697-109G4;0.487515!10723-110A3;0.368612!10179-103C8;0.504947!10160-103A7;0.719474!10180-103C9;0.925902!10162-103A9;0.76196!10021-101D3;0.792825!10840-111E3;0.605598!10706-109H4;0.0818468!10033-101E6;0.932699!10032-101E5;0.679992!10490-107B4;0.655709!10439-106E7;0.426389!10022-101D4;0.490036!10176-103C5;0.704589!10469-106I1;0.578206!10067-101I4;0.400171!10411-106B6;0.655984!10471-106I3;0.227526!10030-101E3;0.773651!10475-106I7;0.698808!10787-110H4;0.199234!10477-106I9;0.631217!10695-109G2;0.0367781!11771-123I7;0.85095!11772-123I8;0.796738!11773-123I9;0.838313!10093-102C3;0.991051!10442-106F1;0.286073!10442-106F1;0.960932!10201-103F3;0.924129!10639-108I9;0.552621!11843-124H7;0.0693092!11841-124H5;0.665664!10693-109F9;0.795678!10436-106E4;0.87875!10483-107A6;0.544633!10282-104F3;0.454271!10023-101D5;0.908071!10066-101I3;0.604255!10065-101I2;0.86402!10800-110I8;0.792088!10610-108F7;0.147842!10841-111E4;0.380079!10541-107H1;0.209317!10842-111E5;0.302302!10562-108A4;0.140051!10024-101D6;0.284701!10064-101I1;0.395405!10609-108F6;0.961941!10048-101G3;0.428515!10781-110G7;0.650696!10181-103D1;0.431514!10159-103A6;0.603701!10056-101H2;0.800201!10737-110B8;0.728054!10025-101D7;0.679605!10044-101F8;0.44551!10424-106D1;0.793774!10463-106H4;0.322078!10616-108G4;0.331367!10486-107A9;0.560397!10062-101H8;0.670762!10202-103F4;0.923796!10158-103A5;0.258348!10441-106E9;0.859667!10031-101E4;0.0658627!10063-101H9;0.71504!10063-101H9;0.392033!11763-123H8;0.94801!11765-123I1;0.470552!11768-123I4;0.503172!10807-111A6;0.526616!10790-110H7;0.180921!10798-110I6;0.063341!10786-110H3;0.120763!10591-108D6;0.0634852!10593-108D8;0.0588943!10590-108D5;0.181561!10026-101D8;0.105138!10096-102C6;0.567174!10168-103B6;0.354328!10154-103A1;0.276894!10209-103G2;0.697848!10061-101H7;0.483235!10027-101D9;0.873071!10043-101F7;0.298569!10783-110G9;0.324081!10028-101E1;0.711712!10060-101H6;0.42363!10203-103F5;0.658466!10059-101H5;0.484117!10047-101G2;0.617934!10029-101E2;0.398752!10058-101H4;0.36867!10418-106C4;0.755049!10492-107B6;0.193342!10694-109G1;0.214733!10797-110I5;0.16923!10057-101H3;0.444818!10100-102D1;0.891419!10055-101H1;0.522146!10204-103F6;0.936444!10191-103E2;0.836872!10563-108A5;0.454909
|name=TCGCGCYG,motif706,CNhs10643,T:593.0(19.32%),B:7483.8(12.18%),P:1e-29
|name=TCGCGCYG,motif706,CNhs10643,T:593.0(19.32%),B:7483.8(12.18%),P:1e-29
|tomtom_result=RSC3#MA0374.1;-1;0.000196538;0.0935522;0.187104;7;TCGCGCTG;CGCGCGG;+!abi4#MA0123.1;2;0.00552373;2.62929;1;8;TCGCGCTG;GGGGGCACCG;-!UGA3#MA0410.1;0;0.00558812;2.65995;1;8;TCGCGCTG;TCCCGCCG;-!E2F1#MA0024.1;2;0.006251;2.97548;1;6;TCGCGCTG;TTTGGCGC;+!TOD6#MA0350.1;12;0.00801758;3.81637;1;8;TCGCGCTG;AGGCACAGCTCATCGCGTTTT;+!RSC30#MA0375.1;-1;0.00866357;4.12386;1;7;TCGCGCTG;CGCGCGCG;-!SUT1#MA0399.1;-1;0.00867906;4.13123;1;7;TCGCGCTG;CGCGGGG;+!MBP1#MA0329.1;1;0.010214;4.86188;1;6;TCGCGCTG;TACGCGT;-!CRZ1#MA0285.1;1;0.0128908;6.13604;1;8;TCGCGCTG;GTGGCTTAG;-!SNT2#MA0384.1;3;0.0134583;6.40613;1;8;TCGCGCTG;TGGTAGCGCCG;+!MBP1::SWI6#MA0330.1;0;0.0140435;6.68471;1;7;TCGCGCTG;ACGCGTT;+!brk#MA0213.1;1;0.0185802;8.84419;1;7;TCGCGCTG;CTGGCGCC;+!CTCF#MA0139.1;11;0.019677;9.36623;1;8;TCGCGCTG;TGGCCACCAGGGGGCGCTA;+!SWI4#MA0401.1;2;0.020486;9.75135;1;6;TCGCGCTG;TTTCGCGT;-!TEA1#MA0405.1;0;0.020486;9.75135;1;8;TCGCGCTG;GCGGACAT;+
}}
}}

Latest revision as of 12:01, 7 September 2012

Full Name: TCGCGCYG,motif706,CNhs10643,T:593.0(19.32%),B:7483.8(12.18%),P:1e-29

Motif matrix
POACGT
196.0660.593169.598326.743
20.593511.16680.6480.593
30.5930.593591.2210.593
424.313488.03958.11422.534
5110.8910.593370.625110.891
60.593486.2662.26543.882
7115.042199.24811.86266.257
826.6850.593565.1290.593

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
RSC3#MA0374.1-10.0001965380.09355220.1871047TCGCGCTGCGCGCGG+
abi4#MA0123.120.005523732.6292918TCGCGCTGGGGGGCACCG-
UGA3#MA0410.100.005588122.6599518TCGCGCTGTCCCGCCG-
E2F1#MA0024.120.0062512.9754816TCGCGCTGTTTGGCGC+
TOD6#MA0350.1120.008017583.8163718TCGCGCTGAGGCACAGCTCATCGCGTTTT+
RSC30#MA0375.1-10.008663574.1238617TCGCGCTGCGCGCGCG-
SUT1#MA0399.1-10.008679064.1312317TCGCGCTGCGCGGGG+
MBP1#MA0329.110.0102144.8618816TCGCGCTGTACGCGT-
CRZ1#MA0285.110.01289086.1360418TCGCGCTGGTGGCTTAG-
SNT2#MA0384.130.01345836.4061318TCGCGCTGTGGTAGCGCCG+
MBP1::SWI6#MA0330.100.01404356.6847117TCGCGCTGACGCGTT+
brk#MA0213.110.01858028.8441917TCGCGCTGCTGGCGCC+
CTCF#MA0139.1110.0196779.3662318TCGCGCTGTGGCCACCAGGGGGCGCTA+
SWI4#MA0401.120.0204869.7513516TCGCGCTGTTTCGCGT-
TEA1#MA0405.100.0204869.7513518TCGCGCTGGCGGACAT+
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