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MacroAPE 1083:HLTF f1: Difference between revisions

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9-111A8;0.182553!10597-108E3;0.420586!10717-109I6;0.10941!10455-106G5;0.337595!10534-107G3;0.231787!10429-106D6;0.250452!10464-106H5;0.337342!10827-111C8;0.493165!10789-110H6;0.516923!10828-111C9;0.216227!10788-110H5;0.788377!10792-110H9;0.0660935!10765-110E9;0.272934!10829-111D1;0.378049!10830-111D2;0.615572!10831-111D3;0.475921!10832-111D4;0.715808!10833-111D5;0.562599!10764-110E8;0.290765!10770-110F5;0.423211!10399-106A3;0.0647328!10400-106A4;0.404878!10405-106A9;0.360729!10834-111D6;0.43096!10835-111D7;0.428758!10836-111D8;0.0142413!10837-111D9;0.0508773!10699-109G6;0.25727!10802-111A1;0.46344!10796-110I4;0.000607371!10010-101C1;0.0159549!10810-111A9;0.450588!10421-106C7;0.0196532!10708-109H6;0.0144998!12235-129G3;0.0826238!12236-129G4;0.0554412!12237-129G5;0.806122!10167-103B5;0.0589633!10151-102I7;0.0976174!10428-106D5;0.0618129!10795-110I3;0.0113605!10805-111A4;0.0173172!10052-101G7;0.142742!10189-103D9;0.45974!10589-108D4;0.157022!10425-106D2;0.17468!10427-106D4;0.0207955!10702-109G9;0.252276!10432-106D9;0.346988!10496-107C1;0.245135!10718-109I7;0.827448!10011-101C2;0.189272!10053-101G8;0.163354!10686-109F2;0.0633666!10084-102B3;0.164274!10012-101C3;0.234478!10085-102B4;0.116519!10482-107A5;0.414195!10419-106C5;0.0634782!10080-102A8;0.00461512!10760-110E4;0.191822!10709-109H7;0.0757483!10710-109H8;0.0156858!10703-109H1;0.0745844!10719-109I8;0.294517!10642-109A3;0.633647!10177-103C6;0.73964!10164-103B2;0.0855008!10173-103C2;0.241108!10166-103B4;0.947101!10083-102B2;0.879301!10188-103D8;0.96813!10552-107I3;0.223107!10553-107I4;0.248429!10013-101C4;0.393465!10536-107G5;0.0278555!10618-108G6;0.377683!10423-106C9;0.0624051!10785-110H2;0.367618!12238-129G6;0.000246242!12239-129G7;0.982819!12240-129G8;0.0612803!10416-106C2;0.492079!10801-110I9;0.884158!10766-110F1;0.231953!10824-111C5;0.0469304!10825-111C6;0.1123!10826-111C7;0.111841!10454-106G4;0.0904557!10409-106B4;0.132447!10638-108I8;0.0500485!10636-108I6;0.0329494!10513-107D9;0.347297!10420-106C6;0.0101423!10082-102B1;0.926865!10014-101C5;0.766728!10070-101I7;0.463642!10452-106G2;0.0365196!10453-106G3;0.217191!10449-106F8;0.332242!10042-101F6;0.254833!10069-101I6;0.186777!10193-103E4;0.550257!10631-108I1;0.191909!10438-106E6;0.330006!10488-107B2;0.169307!10196-103E7;0.0013418!10071-101I8;0.878502!10071-101I8;0.0946951!10041-101F5;0.179814!10451-106G1;0.223866!10450-106F9;0.0833142!10604-108F1;0.329827!10605-108F2;0.360634!10606-108F3;0.972881!10603-108E9;0.670565!10497-107C2;0.680851!10448-106F7;0.0662588!10643-109A4;0.424287!10426-106D3;0.00221199!10431-106D8;0.245527!10197-103E8;0.0831913!10443-106F2;0.214079!10815-111B5;0.408052!10816-111B6;0.776719!10817-111B7;0.783993!10015-101C6;0.630146!10410-106B5;0.448435!10054-101G9;0.919462!10758-110E2;0.111082!10711-109H9;0.0472834!10040-101F4;0.859801!10470-106I2;0.142389!10415-106C1;0.959137!10198-103E9;0.148511!10614-108G2;0.62858!10612-108F9;0.221891!10549-107H9;0.00693455!10615-108G3;0.411097!10487-107B1;0.375413!10433-106E1;0.0030178!10688-109F4;0.664411!10444-106F3;0.25662!10444-106F3;0.381635!10485-107A8;0.429573!10413-106B8;0.101319!10175-103C4;0.858072!10161-103A8;0.25193!12131-128D7;0.128057!10624-108H3;0.00960152!10712-109I1;0.621608!10205-103F7;0.104715!10206-103F8;0.290037!10207-103F9;0.718252!10050-101G5;0.313554!10051-101G6;0.886496!10016-101C7;0.955849!10046-101G1;0.816417!10778-110G4;0.313539!10633-108I3;0.413231!10818-111B8;0.260806!10819-111B9;0.0649986!10820-111C1;0.0620084!10484-107A7;0.0832046!10808-111A7;0.119653!10169-103B7;0.571271!10153-102I9;0.0787014!13425-144D5;0.0652203!13433-144E4;0.290691!13437-144E8;0.311604!11904-125F5;0.263713!11905-125F6;0.0932738!10039-101F3;0.0631991!10791-110H8;0.121909!10017-101C8;0.134935!10045-101F9;0.611923!10509-107D5;0.088574!10839-111E2;0.198313!10692-109F8;0.060874!10079-102A7;0.653441!10078-102A6;0.396267!10721-110A1;0.753053!10569-108B2;0.151611!10570-108B3;0.0341599!10571-108B4;0.0154642!10647-109A8;0.0285205!10752-110D5;0.24619!10782-110G8;0.81725!10726-110A6;0.792915!10018-101C9;0.244571!10086-102B5;0.387922!10182-103D2;0.264469!10165-103B3;0.125161!10499-107C4;0.203011!10408-106B3;0.485221!10019-101D1;0.219619!10068-101I5;0.145416!10075-102A3;0.0793951!10077-102A5;0.060109!10727-110A7;0.0650132!10775-110G1;0.021259!10412-106B7;0.0633968!12231-129F8;0.965375!12232-129F9;0.239699!12233-129G1;0.73426!12234-129G2;0.378337!10414-106B9;0.218374!10170-103B8;0.260569!10183-103D3;0.248661!10150-102I6;0.0979662!10174-103C3;0.142758!10155-103A2;0.121833!10038-101F2;0.139681!10838-111E1;0.0943536!10759-110E3;0.779738!10514-107E1;0.388119!10465-106H6;0.151643!10691-109F7;0.0144257!10843-111E6;0.589467!10844-111E7;0.0529991!11747-123G1;0.61399!11748-123G2;0.219126!11749-123G3;0.161865!11750-123G4;0.0992381!11751-123G5;0.600699!11840-124H4;0.149871!11752-123G6;0.285446!11753-123G7;0.425574!11754-123G8;0.392643!11755-123G9;0.192319!11756-123H1;0.835935!11833-124G6;0.22789!11760-123H5;0.693107!11836-124G9;0.237268!11758-123H3;0.00335858!11835-124G8;0.175126!11762-123H7;0.0181908!11838-124H2;0.404887!11757-123H2;0.0814104!11759-123H4;0.0505096!11761-123H6;0.287675!11842-124H6;0.0451654!11837-124H1;0.0554333!10568-108B1;0.0161752!13230-141I8;0.637398!13231-141I9;0.0691569!10696-109G3;0.0719259!10493-107B7;0.909454!10494-107B8;0.0814561!10850-111F4;0.00777561!10851-111F5;0.389175!10852-111F6;0.657161!10853-111F7;0.574141!10854-111F8;0.813417!10855-111F9;0.433067!10856-111G1;0.916411!10847-111F1;0.99382!10846-111E9;0.141962!10848-111F2;0.460453!10845-111E8;0.923961!10857-111G2;0.406243!10858-111G3;0.313717!10156-103A3;0.189936!11901-125F2;0.136473!11902-125F3;0.0565962!11903-125F4;0.0124344!10689-109F5;0.00248962!10648-109A9;0.285528!10784-110H1;0.135988!10744-110C6;0.0377095!10772-110F7;0.0277506!10474-106I6;0.369448!10600-108E6;0.220124!10684-109E9;0.648703!12226-129F3;0.10094!12227-129F4;0.0229609!10508-107D4;0.17995!10539-107G8;0.881532!10607-108F4;0.652551!10555-107I6;0.359955!10774-110F9;0.811398!10637-108I7;0.151432!10663-109C6;0.767136!10728-110A8;0.607685!10729-110A9;0.167508!10430-106D7;0.051934!10730-110B1;0.0519586!10813-111B3;0.231115!10812-111B2;0.859726!10037-101F1;0.447675!10172-103C1;0.135589!10163-103B1;0.287431!10076-102A4;0.191111!10073-102A1;0.173066!10036-101E9;0.376061!10195-103E6;0.249668!10277-104E7;0.191419!10434-106E2;0.231538!10550-107I1;0.0932102!10545-107H5;0.237188!10544-107H4;0.458694!10704-109H2;0.078709!10510-107D6;0.539654!10558-107I9;0.86809!10020-101D2;0.61137!10732-110B3;0.156333!10049-101G4;0.917859!10698-109G5;0.56114!10437-106E5;0.283386!10417-106C3;0.000105432!10035-101E8;0.201525!10171-103B9;0.171291!10157-103A4;0.215163!10034-101E7;0.125989!10072-101I9;0.201606!10199-103F1;0.257885!10200-103F2;0.689448!10697-109G4;0.473863!10723-110A3;0.313735!10179-103C8;0.702233!10160-103A7;0.788729!10180-103C9;0.538241!10162-103A9;0.935939!10021-101D3;0.64418!10840-111E3;0.127313!10706-109H4;0.0190422!10033-101E6;0.76965!10032-101E5;0.128637!10490-107B4;0.200522!10439-106E7;0.0735958!10022-101D4;0.203706!10176-103C5;0.101938!10469-106I1;0.25661!10067-101I4;0.00083468!10411-106B6;0.0627775!10471-106I3;0.705864!10030-101E3;0.18657!10475-106I7;0.205895!10787-110H4;0.166373!10477-106I9;0.127947!10695-109G2;0.943269!11771-123I7;0.309889!11772-123I8;0.815682!11773-123I9;0.798353!10093-102C3;0.432525!10442-106F1;0.971917!10442-106F1;0.344401!10201-103F3;0.414618!10639-108I9;0.418877!11843-124H7;0.694647!11841-124H5;0.015449!10693-109F9;0.170981!10436-106E4;0.00317909!10483-107A6;0.056742!10282-104F3;0.0244578!10023-101D5;0.497641!10066-101I3;0.984248!10065-101I2;0.478965!10800-110I8;0.470977!10610-108F7;0.243565!10841-111E4;0.836236!10541-107H1;0.395331!10842-111E5;0.735956!10562-108A4;0.582089!10024-101D6;0.641618!10064-101I1;0.834289!10609-108F6;0.0493403!10048-101G3;0.323401!10781-110G7;0.499692!10181-103D1;0.147672!10159-103A6;0.046722!10056-101H2;0.104643!10737-110B8;0.0762469!10025-101D7;0.037916!10044-101F8;0.102711!10424-106D1;0.022871!10463-106H4;0.00610786!10616-108G4;0.100611!10486-107A9;0.217908!10062-101H8;0.00372946!10202-103F4;0.646598!10158-103A5;0.780774!10441-106E9;0.12708!10031-101E4;0.93786!10063-101H9;0.125448!10063-101H9;0.294094!11763-123H8;0.0433055!11765-123I1;0.207222!11768-123I4;0.261168!10807-111A6;0.497824!10790-110H7;0.269352!10798-110I6;0.45266!10786-110H3;0.105103!10591-108D6;0.219827!10593-108D8;0.199029!10590-108D5;0.241118!10026-101D8;0.0885664!10096-102C6;0.93038!10168-103B6;0.0184004!10154-103A1;0.240721!10209-103G2;0.0985935!10061-101H7;0.562071!10027-101D9;0.284498!10043-101F7;0.621938!10783-110G9;0.120857!10028-101E1;0.00160176!10060-101H6;0.447914!10203-103F5;0.614354!10059-101H5;0.441248!10047-101G2;0.547802!10029-101E2;0.600778!10058-101H4;0.218417!10418-106C4;0.348459!10492-107B6;0.758115!10694-109G1;0.16968!10797-110I5;0.655328!10057-101H3;0.0266097!10100-102D1;0.144972!10055-101H1;0.0468218!10204-103F6;0.0136023!10191-103E2;0.158087!10563-108A5;0.315926
|name=HLTF_f1
|name=HLTF_f1
|tomtom_result=Hand1::Tcfe2a#MA0092.1;-2;0.00211693;1.00766;1;10;TAGGGCTGCAAA;GGTCTGGCAT;+!NFIC#MA0161.1;-6;0.008528;4.05933;1;6;TAGGGCTGCAAA;TGCCAA;-!NFATC2#MA0152.1;-6;0.00957388;4.55717;1;6;TAGGGCTGCAAA;TGGAAAA;-!Cebpa#MA0102.1;-1;0.0124528;5.92753;1;11;TAGGGCTGCAAA;GAGATTGCGAAA;-!Pax4#MA0068.1;12;0.0128251;6.10477;1;12;TAGGGCTGCAAA;GGGGGGGGAGTGGAGTATTGGAAATTTTTC;-!ELK1#MA0028.1;-2;0.0130934;6.23247;1;10;TAGGGCTGCAAA;GAGCCGGAAG;+!PHD1#MA0355.1;-3;0.0170596;8.12038;1;9;TAGGGCTGCAAA;TGCTGCAGGT;-!GCR1#MA0304.1;-3;0.0171495;8.16316;1;8;TAGGGCTGCAAA;GGCTTCCA;-!SOK2#MA0385.1;-2;0.0207465;9.87535;1;10;TAGGGCTGCAAA;TGCCTGCAGGT;-
}}
}}

Latest revision as of 12:15, 7 September 2012

Full Name: HLTF_f1

Motif matrix
POACGT
11.51.53.388888888888893.61111111111111
26.777777777777780.03.222222222222220.0
33.01.77777777777778013.222222222222222.0
40.00.06.222222222222223.77777777777778
51.00.06.1111111111111112.8888888888888897
62.88888888888888977.1111111111111110.00.0
72.00.88888888888888910.07.111111111111111
80.00.88888888888888919.111111111111110.0
90.05.888888888888894.111111111111110.0
106.1111111111111113.888888888888890.00.0
119.00.00.01.0
125.3888888888888893.611111111111110.50.5

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation

Hand1::Tcfe2a#MA0092.1-20.002116931.00766110TAGGGCTGCAAAGGTCTGGCAT+
NFIC#MA0161.1-60.0085284.0593316TAGGGCTGCAAATGCCAA-
NFATC2#MA0152.1-60.009573884.5571716TAGGGCTGCAAATGGAAAA-
Cebpa#MA0102.1-10.01245285.92753111TAGGGCTGCAAAGAGATTGCGAAA-
Pax4#MA0068.1120.01282516.10477112TAGGGCTGCAAAGGGGGGGGAGTGGAGTATTGGAAATTTTTC-
ELK1#MA0028.1-20.01309346.23247110TAGGGCTGCAAAGAGCCGGAAG+
PHD1#MA0355.1-30.01705968.1203819TAGGGCTGCAAATGCTGCAGGT-
GCR1#MA0304.1-30.01714958.1631618TAGGGCTGCAAAGGCTTCCA-
SOK2#MA0385.1-20.02074659.87535110TAGGGCTGCAAATGCCTGCAGGT-