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MacroAPE 1083:PAX4: Difference between revisions

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783!10809-111A8;0.665655!10597-108E3;0.387286!10717-109I6;0.193928!10455-106G5;0.00157229!10534-107G3;0.544593!10429-106D6;0.917062!10464-106H5;0.0934406!10827-111C8;0.045486!10789-110H6;0.492683!10828-111C9;0.519726!10788-110H5;0.551007!10792-110H9;0.178653!10765-110E9;0.96379!10829-111D1;0.822967!10830-111D2;0.0548088!10831-111D3;0.734222!10832-111D4;0.747368!10833-111D5;0.861174!10764-110E8;0.730176!10770-110F5;0.0682135!10399-106A3;0.721248!10400-106A4;0.945701!10405-106A9;0.937954!10834-111D6;0.893804!10835-111D7;0.544778!10836-111D8;0.0262841!10837-111D9;0.00175859!10699-109G6;0.131353!10802-111A1;0.126148!10796-110I4;0.640387!10010-101C1;0.0210679!10810-111A9;0.133682!10421-106C7;0.122446!10708-109H6;0.382452!12235-129G3;0.102437!12236-129G4;0.765803!12237-129G5;0.556762!10167-103B5;0.448442!10151-102I7;0.721105!10428-106D5;0.275094!10795-110I3;0.56442!10805-111A4;0.17875!10052-101G7;0.264565!10189-103D9;0.073338!10589-108D4;0.335023!10425-106D2;0.0514349!10427-106D4;0.366879!10702-109G9;8.94331e-05!10432-106D9;0.418758!10496-107C1;0.0478465!10718-109I7;0.00030675!10011-101C2;0.483665!10053-101G8;0.361756!10686-109F2;0.239487!10084-102B3;0.241519!10012-101C3;0.310122!10085-102B4;0.389206!10482-107A5;0.92871!10419-106C5;0.11285!10080-102A8;0.0358598!10760-110E4;0.140749!10709-109H7;0.0159689!10710-109H8;0.00242753!10703-109H1;0.00854915!10719-109I8;0.299085!10642-109A3;0.507279!10177-103C6;0.526288!10164-103B2;0.223345!10173-103C2;0.253751!10166-103B4;0.854692!10083-102B2;0.438406!10188-103D8;0.495682!10552-107I3;0.336924!10553-107I4;0.165976!10013-101C4;0.0323519!10536-107G5;0.0734214!10618-108G6;0.921415!10423-106C9;0.00797429!10785-110H2;0.000954861!12238-129G6;0.00240932!12239-129G7;0.361949!12240-129G8;0.989696!10416-106C2;0.77692!10801-110I9;0.478993!10766-110F1;0.127965!10824-111C5;0.12636!10825-111C6;0.0126717!10826-111C7;0.0266584!10454-106G4;0.0124763!10409-106B4;0.00670788!10638-108I8;0.419915!10636-108I6;0.0584393!10513-107D9;0.443472!10420-106C6;0.0297691!10082-102B1;0.517834!10014-101C5;0.382542!10070-101I7;0.709988!10452-106G2;0.0222795!10453-106G3;0.0344573!10449-106F8;0.00555074!10042-101F6;0.00190371!10069-101I6;0.312503!10193-103E4;0.030974!10631-108I1;0.0744651!10438-106E6;0.212789!10488-107B2;0.0104589!10196-103E7;0.00102022!10071-101I8;0.563928!10071-101I8;0.113232!10041-101F5;0.415267!10451-106G1;0.074287!10450-106F9;0.132691!10604-108F1;0.610279!10605-108F2;0.0214309!10606-108F3;0.00493158!10603-108E9;0.00039611!10497-107C2;0.0513525!10448-106F7;0.0966957!10643-109A4;0.0385293!10426-106D3;0.343198!10431-106D8;0.0620656!10197-103E8;0.00102659!10443-106F2;0.269582!10815-111B5;0.469905!10816-111B6;0.143827!10817-111B7;0.143098!10015-101C6;0.187403!10410-106B5;0.489555!10054-101G9;0.454353!10758-110E2;0.0315352!10711-109H9;0.472095!10040-101F4;0.361079!10470-106I2;0.465105!10415-106C1;0.0115659!10198-103E9;0.0511165!10614-108G2;0.125723!10612-108F9;0.465934!10549-107H9;0.000779239!10615-108G3;0.000395029!10487-107B1;0.36128!10433-106E1;4.16986e-05!10688-109F4;0.00450153!10444-106F3;0.0439371!10444-106F3;0.330447!10485-107A8;0.372071!10413-106B8;0.0760336!10175-103C4;0.0342643!10161-103A8;0.511321!12131-128D7;0.200051!10624-108H3;0.223226!10712-109I1;0.112199!10205-103F7;0.0596818!10206-103F8;0.150912!10207-103F9;0.390151!10050-101G5;0.854423!10051-101G6;0.64521!10016-101C7;0.529699!10046-101G1;0.681649!10778-110G4;0.0691775!10633-108I3;0.0290035!10818-111B8;0.134846!10819-111B9;0.253457!10820-111C1;0.192525!10484-107A7;0.272654!10808-111A7;0.0579256!10169-103B7;0.0228823!10153-102I9;0.3268!13425-144D5;0.181258!13433-144E4;0.396719!13437-144E8;0.616314!11904-125F5;0.801095!11905-125F6;0.0371289!10039-101F3;0.621219!10791-110H8;0.535975!10017-101C8;0.0213756!10045-101F9;0.853381!10509-107D5;0.0348869!10839-111E2;0.764325!10692-109F8;0.00917606!10079-102A7;0.00218006!10078-102A6;0.767954!10721-110A1;0.684696!10569-108B2;0.127091!10570-108B3;0.0758664!10571-108B4;0.73103!10647-109A8;0.174384!10752-110D5;0.123383!10782-110G8;0.102124!10726-110A6;0.882096!10018-101C9;0.865245!10086-102B5;0.0868628!10182-103D2;0.152276!10165-103B3;0.0928892!10499-107C4;0.263161!10408-106B3;0.12733!10019-101D1;0.0712524!10068-101I5;0.654689!10075-102A3;0.0500363!10077-102A5;0.206063!10727-110A7;0.527654!10775-110G1;0.0492986!10412-106B7;0.032174!12231-129F8;0.0421271!12232-129F9;0.0284427!12233-129G1;0.101934!12234-129G2;0.0847875!10414-106B9;0.173399!10170-103B8;0.219933!10183-103D3;0.506762!10150-102I6;0.575591!10174-103C3;0.281611!10155-103A2;0.0921319!10038-101F2;0.173641!10838-111E1;0.181953!10759-110E3;0.141895!10514-107E1;0.261937!10465-106H6;0.231357!10691-109F7;0.181524!10843-111E6;0.179901!10844-111E7;0.527522!11747-123G1;0.356381!11748-123G2;0.0203721!11749-123G3;0.0272669!11750-123G4;0.104098!11751-123G5;0.0295261!11840-124H4;0.0187029!11752-123G6;0.025021!11753-123G7;0.379331!11754-123G8;0.0510511!11755-123G9;0.110931!11756-123H1;0.589338!11833-124G6;0.347088!11760-123H5;0.190213!11836-124G9;0.00810116!11758-123H3;0.275829!11835-124G8;0.917488!11762-123H7;0.0572092!11838-124H2;0.0309707!11757-123H2;0.438365!11759-123H4;0.530061!11761-123H6;0.0845253!11842-124H6;0.017069!11837-124H1;0.319989!10568-108B1;0.0951395!13230-141I8;0.480429!13231-141I9;0.000511241!10696-109G3;0.000185658!10493-107B7;0.0805646!10494-107B8;0.328313!10850-111F4;0.373244!10851-111F5;0.0630924!10852-111F6;0.819177!10853-111F7;0.732791!10854-111F8;0.0711222!10855-111F9;0.843502!10856-111G1;0.76265!10847-111F1;0.315318!10846-111E9;0.215461!10848-111F2;0.845528!10845-111E8;0.728371!10857-111G2;0.0199364!10858-111G3;0.544972!10156-103A3;0.00150411!11901-125F2;0.261539!11902-125F3;0.0559764!11903-125F4;0.00713493!10689-109F5;0.0117071!10648-109A9;0.525138!10784-110H1;0.227707!10744-110C6;0.0434092!10772-110F7;0.426912!10474-106I6;0.702055!10600-108E6;0.65728!10684-109E9;0.746047!12226-129F3;0.00464826!12227-129F4;0.0040564!10508-107D4;0.390411!10539-107G8;0.563236!10607-108F4;0.71068!10555-107I6;0.274682!10774-110F9;0.899701!10637-108I7;0.571283!10663-109C6;0.254743!10728-110A8;0.520204!10729-110A9;0.888388!10430-106D7;0.0282371!10730-110B1;0.957961!10813-111B3;0.0618579!10812-111B2;0.0716222!10037-101F1;0.731703!10172-103C1;0.339435!10163-103B1;0.417725!10076-102A4;0.228528!10073-102A1;0.290885!10036-101E9;0.500938!10195-103E6;0.502786!10277-104E7;0.331513!10434-106E2;0.0633661!10550-107I1;0.0801291!10545-107H5;0.00086072!10544-107H4;0.128694!10704-109H2;0.0964599!10510-107D6;0.0132736!10558-107I9;0.604749!10020-101D2;0.0116459!10732-110B3;0.0587808!10049-101G4;0.340148!10698-109G5;0.0195338!10437-106E5;0.04299!10417-106C3;0.426921!10035-101E8;0.000105356!10171-103B9;0.396147!10157-103A4;0.358411!10034-101E7;0.316631!10072-101I9;0.470273!10199-103F1;0.455322!10200-103F2;0.43726!10697-109G4;0.414377!10723-110A3;0.205471!10179-103C8;0.0757938!10160-103A7;0.422793!10180-103C9;0.687169!10162-103A9;0.738005!10021-101D3;0.951568!10840-111E3;0.999315!10706-109H4;0.00639969!10033-101E6;0.578614!10032-101E5;0.12712!10490-107B4;0.489066!10439-106E7;0.00417957!10022-101D4;0.652236!10176-103C5;0.580305!10469-106I1;0.235209!10067-101I4;0.23526!10411-106B6;0.00841011!10471-106I3;0.315382!10030-101E3;0.77398!10475-106I7;0.249404!10787-110H4;0.591693!10477-106I9;0.773737!10695-109G2;0.236005!11771-123I7;0.00361821!11772-123I8;0.0244342!11773-123I9;0.206114!10093-102C3;0.209477!10442-106F1;0.46957!10442-106F1;0.208386!10201-103F3;0.292888!10639-108I9;0.890308!11843-124H7;0.943297!11841-124H5;0.29749!10693-109F9;0.513606!10436-106E4;0.0185986!10483-107A6;0.00235408!10282-104F3;0.0146762!10023-101D5;0.472015!10066-101I3;0.925659!10065-101I2;0.043607!10800-110I8;0.00588726!10610-108F7;0.193937!10841-111E4;0.327267!10541-107H1;0.0519059!10842-111E5;0.779177!10562-108A4;0.642008!10024-101D6;0.0293048!10064-101I1;0.628433!10609-108F6;0.147582!10048-101G3;0.500571!10781-110G7;0.248073!10181-103D1;0.0432086!10159-103A6;0.0789069!10056-101H2;0.396015!10737-110B8;0.000520404!10025-101D7;0.0235852!10044-101F8;0.273338!10424-106D1;0.025046!10463-106H4;0.0383737!10616-108G4;0.00813554!10486-107A9;0.118699!10062-101H8;0.0169496!10202-103F4;0.027801!10158-103A5;0.54913!10441-106E9;0.222739!10031-101E4;0.58765!10063-101H9;0.416523!10063-101H9;0.383282!11763-123H8;0.186611!11765-123I1;0.00231055!11768-123I4;0.0040577!10807-111A6;0.0278393!10790-110H7;0.797719!10798-110I6;0.789876!10786-110H3;0.359929!10591-108D6;0.170875!10593-108D8;0.0275837!10590-108D5;0.13821!10026-101D8;0.00353921!10096-102C6;0.960917!10168-103B6;0.410171!10154-103A1;0.440738!10209-103G2;0.211875!10061-101H7;0.586197!10027-101D9;0.0430653!10043-101F7;0.963838!10783-110G9;0.554277!10028-101E1;0.781907!10060-101H6;0.652257!10203-103F5;0.0220398!10059-101H5;0.555066!10047-101G2;0.349794!10029-101E2;0.560353!10058-101H4;0.610563!10418-106C4;0.0122919!10492-107B6;0.0685102!10694-109G1;0.16723!10797-110I5;0.0010599!10057-101H3;0.00352263!10100-102D1;0.0955959!10055-101H1;0.0555103!10204-103F6;0.000949791!10191-103E2;0.203284!10563-108A5;0.148725
|name=PAX4
|name=PAX4
|tomtom_result=Pax4#MA0068.1;0;0;0;0;30;AAAAAATATCAAATACTACACTCCCACCCC;GAAAAATTTCCCATACTCCACTCCCCCCCC;+!SUM1#MA0398.1;-1;2.17753e-05;0.010365;0.0092566;9;AAAAAATATCAAATACTACACTCCCACCCC;AAAAATTTT;-!HMG-I/Y#MA0045.1;0;2.95518e-05;0.0140667;0.0092566;16;AAAAAATATCAAATACTACACTCCCACCCC;CAACAAATGGAAAAAC;+!MGA1#MA0336.1;-1;0.000100708;0.0479369;0.0236587;21;AAAAAATATCAAATACTACACTCCCACCCC;AGGACTATAGAACACTCTAAA;+!SFP1#MA0378.1;5;0.000363626;0.173086;0.0599899;16;AAAAAATATCAAATACTACACTCCCACCCC;CCGTAGAAAATTTTTTTCAAT;-!NHP6A#MA0345.1;0;0.000386696;0.184067;0.0599899;21;AAAAAATATCAAATACTACACTCCCACCCC;TCATTTTTATATATAGGTCAT;-!NHP6B#MA0346.1;0;0.000446877;0.212713;0.0599899;20;AAAAAATATCAAATACTACACTCCCACCCC;TCATATTATATATAAATAAA;-!STB3#MA0390.1;7;0.000705994;0.336053;0.0829276;14;AAAAAATATCAAATACTACACTCCCACCCC;CCAGAGTGAAAAATTTTGGAC;-!EDS1#MA0294.1;2;0.00122849;0.584762;0.104392;7;AAAAAATATCAAATACTACACTCCCACCCC;CGGAAAAAT;+!ARO80#MA0273.1;0;0.0013331;0.634553;0.104392;21;AAAAAATATCAAATACTACACTCCCACCCC;ACATACTTGCCGAGAATTATC;-!SFL1#MA0377.1;1;0.00208182;0.990946;0.139734;20;AAAAAATATCAAATACTACACTCCCACCCC;TAGAGAATAGAAGAAATAAAA;+!RGT1#MA0367.1;3;0.00297253;1.41493;0.186219;8;AAAAAATATCAAATACTACACTCCCACCCC;CCGGAAAAACT;-!br_Z1#MA0010.1;-2;0.00401736;1.91226;0.235944;14;AAAAAATATCAAATACTACACTCCCACCCC;GTAATAAACAAATC;+!hb#MA0049.1;4;0.00465809;2.21725;0.257482;6;AAAAAATATCAAATACTACACTCCCACCCC;GCATAAAAAA;+!squamosa#MA0082.1;1;0.00695244;3.30936;0.343852;13;AAAAAATATCAAATACTACACTCCCACCCC;CCAAAAATGGAAAT;+!TBP#MA0386.1;0;0.00770996;3.66994;0.362252;21;AAAAAATATCAAATACTACACTCCCACCCC;GACTAGATATATATATTCGAT;+!br_Z4#MA0013.1;4;0.00893364;4.25241;0.399758;7;AAAAAATATCAAATACTACACTCCCACCCC;TAGTAAACAAA;+!HAT5#MA0008.1;-1;0.0113421;5.39882;0.467031;8;AAAAAATATCAAATACTACACTCCCACCCC;AATAATTG;-!SMP1#MA0383.1;-6;0.011431;5.44117;0.467031;21;AAAAAATATCAAATACTACACTCCCACCCC;TTACCTATAATTAAATTAGCA;+!br_Z3#MA0012.1;-1;0.0150861;7.18099;0.521685;11;AAAAAATATCAAATACTACACTCCCACCCC;TAAACTAAAAG;+!FKH1#MA0296.1;1;0.0157283;7.48667;0.521685;19;AAAAAATATCAAATACTACACTCCCACCCC;TGAATTGTAAACAAAGAGGA;+!TBP#MA0386.1;0;0.0166549;7.92772;0.521685;15;AAAAAATATCAAATACTACACTCCCACCCC;GTATAAAAGGCGGGG;+!TBP#MA0386.1;0;0.0166549;7.92772;0.521685;15;AAAAAATATCAAATACTACACTCCCACCCC;GTATAAAAGGCGGGG;+!FOXI1#MA0042.1;0;0.0176939;8.4223;0.536353;12;AAAAAATATCAAATACTACACTCCCACCCC;AAACAAACATCC;-
}}
}}

Latest revision as of 12:17, 7 September 2012

Full Name: PAX4

Motif matrix
null

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
Pax4#MA0068.1000030AAAAAATATCAAATACTACACTCCCACCCCGAAAAATTTCCCATACTCCACTCCCCCCCC+
SUM1#MA0398.1-12.17753e-050.0103650.00925669AAAAAATATCAAATACTACACTCCCACCCCAAAAATTTT-
HMG-I/Y#MA0045.102.95518e-050.01406670.009256616AAAAAATATCAAATACTACACTCCCACCCCCAACAAATGGAAAAAC+
MGA1#MA0336.1-10.0001007080.04793690.023658721AAAAAATATCAAATACTACACTCCCACCCCAGGACTATAGAACACTCTAAA+
SFP1#MA0378.150.0003636260.1730860.059989916AAAAAATATCAAATACTACACTCCCACCCCCCGTAGAAAATTTTTTTCAAT-
NHP6A#MA0345.100.0003866960.1840670.059989921AAAAAATATCAAATACTACACTCCCACCCCTCATTTTTATATATAGGTCAT-
NHP6B#MA0346.100.0004468770.2127130.059989920AAAAAATATCAAATACTACACTCCCACCCCTCATATTATATATAAATAAA-
STB3#MA0390.170.0007059940.3360530.082927614AAAAAATATCAAATACTACACTCCCACCCCCCAGAGTGAAAAATTTTGGAC-
EDS1#MA0294.120.001228490.5847620.1043927AAAAAATATCAAATACTACACTCCCACCCCCGGAAAAAT+
ARO80#MA0273.100.00133310.6345530.10439221AAAAAATATCAAATACTACACTCCCACCCCACATACTTGCCGAGAATTATC-
SFL1#MA0377.110.002081820.9909460.13973420AAAAAATATCAAATACTACACTCCCACCCCTAGAGAATAGAAGAAATAAAA+
RGT1#MA0367.130.002972531.414930.1862198AAAAAATATCAAATACTACACTCCCACCCCCCGGAAAAACT-
br_Z1#MA0010.1-20.004017361.912260.23594414AAAAAATATCAAATACTACACTCCCACCCCGTAATAAACAAATC+
hb#MA0049.140.004658092.217250.2574826AAAAAATATCAAATACTACACTCCCACCCCGCATAAAAAA+
squamosa#MA0082.110.006952443.309360.34385213AAAAAATATCAAATACTACACTCCCACCCCCCAAAAATGGAAAT+
TBP#MA0386.100.007709963.669940.36225221AAAAAATATCAAATACTACACTCCCACCCCGACTAGATATATATATTCGAT+
br_Z4#MA0013.140.008933644.252410.3997587AAAAAATATCAAATACTACACTCCCACCCCTAGTAAACAAA+
HAT5#MA0008.1-10.01134215.398820.4670318AAAAAATATCAAATACTACACTCCCACCCCAATAATTG-
SMP1#MA0383.1-60.0114315.441170.46703121AAAAAATATCAAATACTACACTCCCACCCCTTACCTATAATTAAATTAGCA+
br_Z3#MA0012.1-10.01508617.180990.52168511AAAAAATATCAAATACTACACTCCCACCCCTAAACTAAAAG+
FKH1#MA0296.110.01572837.486670.52168519AAAAAATATCAAATACTACACTCCCACCCCTGAATTGTAAACAAAGAGGA+
TBP#MA0386.100.01665497.927720.52168515AAAAAATATCAAATACTACACTCCCACCCCGTATAAAAGGCGGGG+
TBP#MA0386.100.01665497.927720.52168515AAAAAATATCAAATACTACACTCCCACCCCGTATAAAAGGCGGGG+
FOXI1#MA0042.100.01769398.42230.53635312AAAAAATATCAAATACTACACTCCCACCCCAAACAAACATCC-
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