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== ENCODE TF ChIP-seq peak enrichment analysis ==
== test ==
{{#info: Method: For each TF and each co-expression cluster, the number of promoters with ENCODE TF ChIP signal was compared with the rest of promoters from the robust set using Fisher's exact test. Clusters with significant ChIP enrichment (q <nowiki><=</nowiki>  0.05)  after Benjamini-Hochberg correction were retained.  <br>Analyst: Erick Arner}}  (#promoters = Number of promoters in cluster that have ChIP signal of the TF)
 
<html>
<html>
<script type="text/javascript">
<br>
$(document).ready(function() {
<!-- tf enrich table: start-->
    $('#tf_chipseq_enrich').dataTable({
<script type="text/javascript" charset="utf-8">
var ffcp_tf_enrichscore_d=
[chr12:107078493..107078533,+!p3@RFX4!2.02!102.95!RFX4;;chr7:100065686..100065701,-!p2@TSC22D4!2.00!98.04!TSC22D4;;chr4:57547454..57547469,-!p1@HOPX!1.94!86.97!HOPX;;chr7:5111723..5111807,+!p2@RBAK!1.90!78.52!RBAK;;chr2:114036488..114036504,-!p1@PAX8!1.78!58.94!PAX8];
 
$(document).ready(function() {
$('#ffcp_tf_enrichscore').html( '<table cellpadding="0" cellspacing="0" border="0" class="display" id="ffcp_tf_enrichscore_cont"></table>' );
$('#ffcp_tf_enrichscore_cont').dataTable( {
"sDom": '<"toolbar">frtip',
"sScrollY": "300px",
"sScrollY": "300px",
"bPaginate": false,
"bPaginate": false,
"bScrollCollapse": true,
"bScrollCollapse": true,
"iDisplayLength": -1,
"iDisplayLength": -1,
"aaSorting": [[2,'desc']],
"aaData": ffcp_tf_enrichscore_d,
"aoColumnDefs": [{"fnRender": function ( o, val ) {var elem = o.aData[0].split("#"); return "<a href=\"/resource_browser/EntrezGene:"+elem[1]+"\">"+elem[0]+"</a>";}, "aTargets": [ 0 ]}, { "sWidth": "150px", "sType": "numeric", "aTargets": [3] },{ "sWidth": "150px", "sType": "numeric", "aTargets": [4] }]
"aoColumns": [
});
{ "sTitle": "FFCP Phase1","sWidth": "30px",
});
"fnRender": function(obj) {
</script>
var id = obj.aData[ obj.iDataColumn ].split("!");
return sReturn = "<a href=\"/resource_browser/"+encodeURI(id[0])+"\">"+id[1]+"</a>";
}
},
{ "sTitle": "Enrichment Score","sWidth": "30px"},
{ "sTitle": "TPM","sWidth": "30px"},
{ "sTitle": "TF","sWidth": "30px"}
 
],
"aaSorting": [[ 1, "desc" ]]
} );
$("div.toolbar").html('<b>TF expression and enrichment</b>');
$("div.toolbar").css('border-width', '0 0 2px 0');
$("div.toolbar").css('border-color', '#6495ED');
$("div.toolbar").css('border-style', 'solid');
} );
</script>
<!-- tf enrich table: end-->
</html>
</html>
<table id="tf_chipseq_enrich"><html><thead></html><tr><th>TF</th><th>#promoters</th><th>Enrichment</th><th>p-value</th><th>q-value</th></tr><html></thead><tbody></html>
{{#arraymap:IRF4#3662;4:10.95725634:0.000261492:0.002802174!MXI1#4601;4:4.980785814:0.005094415:0.023698528!NFKB1#4790;8:5.488063424:1.21E-06:4.91E-05|!|$
|<tr><td>{{#replace:{{#replace:$|;|</td><td>}}|:|</td><td>}}</td></tr>
|}}
<html></tbody></html></table>

Revision as of 09:57, 6 September 2012



test


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