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{{MCL_coexpression_mm9|gostat_on_MCL_coexpression=GO:0021545;cranial nerve development;0.0191702026015879;13867!GO:0016328;lateral plasma membrane;0.0191702026015879;13867!GO:0014037;Schwann cell differentiation;0.0191702026015879;13867!GO:0016494;C-X-C chemokine receptor activity;0.0191702026015879;18441!GO:0019958;C-X-C chemokine binding;0.0191702026015879;18441!GO:0021675;nerve development;0.0191702026015879;13867!GO:0043524;negative regulation of neuron apoptosis;0.0242636265920812;13867!GO:0007422;peripheral nervous system development;0.0242636265920812;13867!GO:0001637;G-protein chemoattractant receptor activity;0.0242636265920812;18441!GO:0004950;chemokine receptor activity;0.0242636265920812;18441!GO:0019956;chemokine binding;0.0242636265920812;18441!GO:0043523;regulation of neuron apoptosis;0.0242636265920812;13867!GO:0001608;nucleotide receptor activity, G-protein coupled;0.0242636265920812;18441!GO:0045028;purinergic nucleotide receptor activity, G-protein coupled;0.0242636265920812;18441!GO:0016502;nucleotide receptor activity;0.0242636265920812;18441!GO:0001614;purinergic nucleotide receptor activity;0.0242636265920812;18441!GO:0051402;neuron apoptosis;0.0242636265920812;13867!GO:0010001;glial cell differentiation;0.0242636265920812;13867!GO:0042063;gliogenesis;0.0247992843785981;13867!GO:0016324;apical plasma membrane;0.0281500833507036;13867!GO:0044459;plasma membrane part;0.0320131465064437;13867,18441!GO:0004714;transmembrane receptor protein tyrosine kinase activity;0.0323688831531588;13867!GO:0019955;cytokine binding;0.0334538483107821;18441!GO:0019199;transmembrane receptor protein kinase activity;0.0349252253364959;13867!GO:0045177;apical part of cell;0.0353614959694466;13867!GO:0005886;plasma membrane;0.0417949587817344;13867,18441!GO:0001653;peptide receptor activity;0.0417949587817344;18441!GO:0008528;peptide receptor activity, G-protein coupled;0.0417949587817344;18441!GO:0004888;transmembrane receptor activity;0.0442357757106788;13867,18441!GO:0042277;peptide binding;0.0496786384722613;18441!}}
{{MCL_coexpression_mm9
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|gostat_on_MCL_coexpression=GO:0021545;cranial nerve development;0.0191702026015879;13867!GO:0016328;lateral plasma membrane;0.0191702026015879;13867!GO:0014037;Schwann cell differentiation;0.0191702026015879;13867!GO:0016494;C-X-C chemokine receptor activity;0.0191702026015879;18441!GO:0019958;C-X-C chemokine binding;0.0191702026015879;18441!GO:0021675;nerve development;0.0191702026015879;13867!GO:0043524;negative regulation of neuron apoptosis;0.0242636265920812;13867!GO:0007422;peripheral nervous system development;0.0242636265920812;13867!GO:0001637;G-protein chemoattractant receptor activity;0.0242636265920812;18441!GO:0004950;chemokine receptor activity;0.0242636265920812;18441!GO:0019956;chemokine binding;0.0242636265920812;18441!GO:0043523;regulation of neuron apoptosis;0.0242636265920812;13867!GO:0001608;nucleotide receptor activity, G-protein coupled;0.0242636265920812;18441!GO:0045028;purinergic nucleotide receptor activity, G-protein coupled;0.0242636265920812;18441!GO:0016502;nucleotide receptor activity;0.0242636265920812;18441!GO:0001614;purinergic nucleotide receptor activity;0.0242636265920812;18441!GO:0051402;neuron apoptosis;0.0242636265920812;13867!GO:0010001;glial cell differentiation;0.0242636265920812;13867!GO:0042063;gliogenesis;0.0247992843785981;13867!GO:0016324;apical plasma membrane;0.0281500833507036;13867!GO:0044459;plasma membrane part;0.0320131465064437;13867,18441!GO:0004714;transmembrane receptor protein tyrosine kinase activity;0.0323688831531588;13867!GO:0019955;cytokine binding;0.0334538483107821;18441!GO:0019199;transmembrane receptor protein kinase activity;0.0349252253364959;13867!GO:0045177;apical part of cell;0.0353614959694466;13867!GO:0005886;plasma membrane;0.0417949587817344;13867,18441!GO:0001653;peptide receptor activity;0.0417949587817344;18441!GO:0008528;peptide receptor activity, G-protein coupled;0.0417949587817344;18441!GO:0004888;transmembrane receptor activity;0.0442357757106788;13867,18441!GO:0042277;peptide binding;0.0496786384722613;18441!
}}

Revision as of 11:24, 11 October 2012


Phase1 CAGE Peaks

 Short description
Mm9::chr10:128026678..128026698,-p1@Erbb3
Mm9::chr10:128026706..128026729,-p3@Erbb3
Mm9::chr10:128026735..128026750,-p2@Erbb3
Mm9::chr3:60806700..60806705,+p2@P2ry1
Mm9::chr3:60806708..60806733,+p1@P2ry1


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data


GO IDGO nameFDR corrected p-value
GO:0021545cranial nerve development0.0191702026015879
GO:0016328lateral plasma membrane0.0191702026015879
GO:0014037Schwann cell differentiation0.0191702026015879
GO:0016494C-X-C chemokine receptor activity0.0191702026015879
GO:0019958C-X-C chemokine binding0.0191702026015879
GO:0021675nerve development0.0191702026015879
GO:0043524negative regulation of neuron apoptosis0.0242636265920812
GO:0007422peripheral nervous system development0.0242636265920812
GO:0001637G-protein chemoattractant receptor activity0.0242636265920812
GO:0004950chemokine receptor activity0.0242636265920812
GO:0019956chemokine binding0.0242636265920812
GO:0043523regulation of neuron apoptosis0.0242636265920812
GO:0001608nucleotide receptor activity, G-protein coupled0.0242636265920812
GO:0045028purinergic nucleotide receptor activity, G-protein coupled0.0242636265920812
GO:0016502nucleotide receptor activity0.0242636265920812
GO:0001614purinergic nucleotide receptor activity0.0242636265920812
GO:0051402neuron apoptosis0.0242636265920812
GO:0010001glial cell differentiation0.0242636265920812
GO:0042063gliogenesis0.0247992843785981
GO:0016324apical plasma membrane0.0281500833507036
GO:0044459plasma membrane part0.0320131465064437
GO:0004714transmembrane receptor protein tyrosine kinase activity0.0323688831531588
GO:0019955cytokine binding0.0334538483107821
GO:0019199transmembrane receptor protein kinase activity0.0349252253364959
GO:0045177apical part of cell0.0353614959694466
GO:0005886plasma membrane0.0417949587817344
GO:0001653peptide receptor activity0.0417949587817344
GO:0008528peptide receptor activity, G-protein coupled0.0417949587817344
GO:0004888transmembrane receptor activity0.0442357757106788
GO:0042277peptide binding0.0496786384722613



Relative expression of the co-expression cluster over median <br>Analyst:



"{{{coexpression_dpi_cluster_scores_median}}}" is not a number.

Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br>disease_data<br>


Cell Type
Ontology termp-valuen

Uber Anatomy
Ontology termp-valuen

Disease
Ontology termp-valuen


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data


Novel motifs




JASPAR motifs


Motifs-log10(p-value)

{{{tfbs_overrepresentation_jaspar}}}