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MCL coexpression mm9:85: Difference between revisions

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{{MCL_coexpression_mm9
{{MCL_coexpression_mm9
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|coexpression_dpi_cluster_scores_mean=0.0179910490159665,0.0274859078247461,0.0267153759921767,0.0145616067944574,0.0173464409738954,0.0873956097197487,0.0866141908506775,-0.0161089686542092,-0.0263224412948015,-0.0189565859368746,-0.0288160458960424,-0.0268481760139594,-0.0276727303198212,-0.0224573102627316,-0.0162638510072239,-0.00497707896570674,-0.0068186748790709,-0.0111895651843818,-0.0116223741073107,-0.00748450270476474,0.0392215567994273,-0.0143613729600046,-0.0108136261866723,0.0572925704291978,0.0594432263838936,0.0323683056414117,0.0497873571634917,0.0519022601952145,0.0596122653510885,0.0437824555316031,0.0593272749205533,-0.00159421311395931,-0.00455018101519532,-0.0249733397761085,0.0378226670606772,0.0462694117491807,0.0444505931417183,-0.021676712844991,-0.0214457891168555,-0.0183461524560828,-0.0189371624308546,-0.0214052258828243,-0.0169790891771991,0.000681991560297864,0.000966160605741998,0.0128439365466438,-0.00788976360753919,0.00545471495383877,0.00346542954078978,0.00845419124616537,0.0116430075401631,0.00513255527317344,-0.0148378551888842,-0.0247508768985499,-0.0272901802534042,-0.0029845097242543,-0.00237757171607193,-0.00828341940366112,0.00679130896598876,0.0111613807487653,0.0032273939651379,0.00235067988716656,0.00147333670736481,-0.01027370237286,-0.00920924192980408,-0.0116308427112081,0.00136732624407498,0.0178711154465276,-0.0051353803760141,-0.00679201522061489,-0.0063769812187847,0.0156025077457558,0.0120825349586716,-0.00692051948170935,-0.00474456333201097,-0.00420252322839793,0.00166902314729797,0.0185309767634569,0.0172711953637302,0.00573430279336869,0.00576883923066282,0.00679160274055256,0.0143907499497059,0.0246486118533338,0.0127333774493208,0.0113971828249569,0.0141645888854379,0.00574394758469245,-0.00331004933573504,-0.000918419035648933,0.0329785699478728,0.0969285472995674,0.01864162691449,0.0409378091203607,0.0327681226040961,0.028598863524723,0.177299142640473,0.00641909076967038,0.00828697414473657,0.0104448287146339,0.0168422466824942,-0.00595058139058772,-0.0152733171772889,-0.00127250893373515,0.00914142205943261,0.00369249125502321,0.00853038686896376,0.0975379347036313,-0.00340664464393615,0.0175212538290376,0.0118817047157141,0.0723152938726032,0.0367050251942795,0.0704265559199666,0.0158973720310667,0.0135723178690139,0.0397377796960916,0.00289042999556299,-0.0156984992002645,0.000348318321813755,0.00180898547406711,-0.0065962528325077,0.117509567549847,-0.00354268179249737,0.00571650578648728,0.398489851855786,-0.0157811337087549,-0.0149460996183531,-0.0125729697935679,0.0133092681797943,0.0155958172991445,0.002341963836712,0.00548219413404416,0.00790405479401406,0.013266625429132,0.0167484308310887,0.00305383562747289,0.0118087403112189,0.0247751602320576,0.0218863265847188,0.0142071738698518,0.0295972050973076,0.0405590487637348,0.0407332646677275,0.0301270830861392,0.0386389505434717,0.0283996606426697,0.0332929118231134,-0.00203925120759519,0.0041273714173169,0.0042151755174148,0.00718636964853619,0.0148849905733005,0.01820957369165,0.0225040668322642,0.0373230476525794,-0.0124743065225642,-0.00454024492982919,-0.00773014242819437,-0.00114332018959968,0.0024361414966177,-0.000185643727612775,-0.00505962087830552,-0.00492172670465925,-0.00531901325653502,-0.00221698764303885,-0.00078717107514484,0.00133007492693522,0.00595788229171155,0.0120107412191043,0.00961353214574866,0.0115992120626457,0.00935171059897927,0.00979293385488947,0.0102142764624057,0.00536624978602614,0.346237323930506,0.0837331224186475,0.030433834274196,0.0373802205728659,0.169697754911313,0.334057423682918,0.279947563179557,0.334031586832508,0.312521244003232,0.208587906561233,0.45390894005849,0.375354960725505,0.420278341190393,0.278607469769203,0.0891303985541409,0.227440458601038,0.00760524909343138,0.0606319595238091,0.018296485014954,0.024570996254448,0.0277752498687223,0.0624137825127531,0.049107698176949,0.0461407594862774,0.0306349312651335,0.031877148151332,0.0945208734691436,0.0220424156048657,0.0311220808523186,0.0331180190663526,0.0437519681202264,0.0633110696697454,0.0860261914351132,0.0482737946502135,0.0552508808582404,0.0865698342374751,0.0655404112859056,0.0783314008940501,0.111565419332878,0.0744199401871612,0.0807292532229284,0.0567896725947605,0.0392509141454966,0.00916751688056556,0.0170805699821098,0.0232531011662755,0.0172323065236993,0.0171027127735025,0.0349058540373991,0.113254066455653,0.0314788810554915,0.0238269387634529,0.0219000983076245,0.039017467736701,0.0400235493943257,0.0351771096801918,-0.0101824007786371,-0.0201601492387758,0.0669706615361043,0.0336273333271434,0.0225608038336654,0.0196286424175763,-0.00227290962711436,-0.00772616689555116,-0.00806201950621235,-1.03926705062741e-05,-0.0101742923369269,-0.0113144088821506,-0.00993118971240261,-0.0155223530127518,-0.00813134744277463,-0.00739394723494011,-0.010118034178642,0.00369861903574672,0.0218408318615575,0.0151574280867944,0.00482563290427229,0.0201752560315933,1.26990162981728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|coexpression_dpi_cluster_scores_median=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0570741246689917,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.247081966651559,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.220327159451074,0,0,0,0.0526429550379996,0.169025029352631,0.159794533105191,0.196086850610712,0.168653336497203,0.0662136857075299,0.249348336416257,0.203269403191864,0.250384951982191,0,0,0.0788703512227347,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.11250690858843,0.171890569083022,0.572860497687324,1.07865667247798,1.05444321951919,1.11907928703353,0.764533659321136,1.00420339938993,1.08247083821106,1.11425716037199,1.12141612089171,1.16385307678532,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.195175899192123,0,0,0.150072612586664,0.0737896374598673,0,0,0,0,0,0,0.291073584836546,0,0.148182634048186,0.129974354469319,0.0824580172145032,0.218821008874332,0.187367671491058,0.0962007932069227,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0348871470294297,0,0,0,0,0,0
|gostat_on_MCL_coexpression=GO:0004571;mannosyl-oligosaccharide 1,2-alpha-mannosidase activity;0.00952426148919091;192193,108687!GO:0005179;hormone activity;0.00952426148919091;15874,16333,14526,16334!GO:0015924;mannosyl-oligosaccharide mannosidase activity;0.00952426148919091;192193,108687!GO:0008643;carbohydrate transport;0.0192014725404575;16333,13476,16334!GO:0015923;mannosidase activity;0.0245801750004437;192193,108687!
|gostat_on_MCL_coexpression=GO:0004571;mannosyl-oligosaccharide 1,2-alpha-mannosidase activity;0.00952426148919091;192193,108687!GO:0005179;hormone activity;0.00952426148919091;15874,16333,14526,16334!GO:0015924;mannosyl-oligosaccharide mannosidase activity;0.00952426148919091;192193,108687!GO:0008643;carbohydrate transport;0.0192014725404575;16333,13476,16334!GO:0015923;mannosidase activity;0.0245801750004437;192193,108687!
}}
}}

Revision as of 12:36, 11 October 2012


Phase1 CAGE Peaks

 Short description
Mm9::chr10:118513215..118513229,-p@chr10:118513215..118513229
-
Mm9::chr10:42660260..42660290,+p@chr10:42660260..42660290
+
Mm9::chr10:77004684..77004711,+p4@Itgb2
Mm9::chr10:93145221..93145232,+p@chr10:93145221..93145232
+
Mm9::chr11:104162667..104162680,-p@chr11:104162667..104162680
-
Mm9::chr11:116355895..116355908,-p4@Prpsap1
Mm9::chr11:116355917..116355946,-p2@Prpsap1
Mm9::chr11:120504603..120504616,-p2@Pycr1
Mm9::chr11:36645195..36645214,-p@chr11:36645195..36645214
-
Mm9::chr11:69806012..69806043,+p@chr11:69806012..69806043
+
Mm9::chr11:72823251..72823300,+p1@P2rx1
Mm9::chr11:74336076..74336095,-p@chr11:74336076..74336095
-
Mm9::chr11:74336100..74336132,-p@chr11:74336100..74336132
-
Mm9::chr11:75739403..75739448,-p1@Rph3al
Mm9::chr12:106999656..106999668,+p@chr12:106999656..106999668
+
Mm9::chr12:110120982..110120989,-p@chr12:110120982..110120989
-
Mm9::chr13:12612644..12612684,-p2@Edaradd
Mm9::chr13:56849328..56849340,+p@chr13:56849328..56849340
+
Mm9::chr13:59680417..59680420,+p@chr13:59680417..59680420
+
Mm9::chr15:100246221..100246232,-p@chr15:100246221..100246232
-
Mm9::chr15:34383040..34383058,+p1@BC030476
Mm9::chr15:34608631..34608647,-p3@Nipal2
Mm9::chr15:52127064..52127100,+p2@Slc30a8
Mm9::chr15:52127197..52127209,+p1@Slc30a8
Mm9::chr15:72760619..72760646,-p@chr15:72760619..72760646
-
Mm9::chr15:72869220..72869245,-p@chr15:72869220..72869245
-
Mm9::chr15:78861279..78861289,+p2@Galr3
p2@Gcat
Mm9::chr15:78861315..78861363,+p1@Galr3
p1@Gcat
Mm9::chr15:78861375..78861382,+p@chr15:78861375..78861382
+
Mm9::chr15:98557961..98557982,-p@chr15:98557961..98557982
-
Mm9::chr15:98557986..98558040,-p@chr15:98557986..98558040
-
Mm9::chr16:11008557..11008586,+p1@Gm4262
Mm9::chr16:93368498..93368512,+p@chr16:93368498..93368512
+
Mm9::chr17:26338250..26338257,-p5@Arhgdig
Mm9::chr17:26338308..26338332,-p3@Arhgdig
Mm9::chr17:26338393..26338437,-p4@Arhgdig
Mm9::chr17:28695756..28695770,+p@chr17:28695756..28695770
+
Mm9::chr17:46727435..46727459,-p@chr17:46727435..46727459
-
Mm9::chr18:17942879..17942880,-p@chr18:17942879..17942880
-
Mm9::chr18:34531496..34531499,-p@chr18:34531496..34531499
-
Mm9::chr18:34532145..34532154,-p@chr18:34532145..34532154
-
Mm9::chr18:34532155..34532177,-p@chr18:34532155..34532177
-
Mm9::chr18:34532967..34533097,-p1@Reep5
Mm9::chr18:39522574..39522590,+p@chr18:39522574..39522590
+
Mm9::chr19:29658540..29658567,+p@chr19:29658540..29658567
+
Mm9::chr19:52338934..52338945,+p1@Ins1
Mm9::chr19:52339440..52339446,-p@chr19:52339440..52339446
-
Mm9::chr19:5394335..5394383,-p1@uc008gcw.1
Mm9::chr19:58803454..58803471,+p1@Pnliprp1
Mm9::chr19:58804381..58804392,+p@chr19:58804381..58804392
+
Mm9::chr19:58804461..58804581,+p@chr19:58804461..58804581
+
Mm9::chr19:58804490..58804507,-p@chr19:58804490..58804507
-
Mm9::chr19:58804543..58804555,-p@chr19:58804543..58804555
-
Mm9::chr19:58804572..58804577,-p@chr19:58804572..58804577
-
Mm9::chr19:58804595..58804623,-p@chr19:58804595..58804623
-
Mm9::chr19:58804956..58805053,+p@chr19:58804956..58805053
+
Mm9::chr19:58804986..58805014,-p@chr19:58804986..58805014
-
Mm9::chr19:58805054..58805072,-p@chr19:58805054..58805072
-
Mm9::chr19:58806508..58806517,+p@chr19:58806508..58806517
+
Mm9::chr19:58806521..58806542,+p@chr19:58806521..58806542
+
Mm9::chr19:58806552..58806584,+p@chr19:58806552..58806584
+
Mm9::chr19:58806590..58806611,+p@chr19:58806590..58806611
+
Mm9::chr19:58807834..58807898,+p@chr19:58807834..58807898
+
Mm9::chr19:58807909..58807926,+p@chr19:58807909..58807926
+
Mm9::chr19:58809149..58809223,+p@chr19:58809149..58809223
+
Mm9::chr19:58809166..58809190,-p@chr19:58809166..58809190
-
Mm9::chr19:58809382..58809441,+p@chr19:58809382..58809441
+
Mm9::chr19:58809429..58809444,-p@chr19:58809429..58809444
-
Mm9::chr19:58811484..58811517,+p@chr19:58811484..58811517
+
Mm9::chr19:58811518..58811535,+p@chr19:58811518..58811535
+
Mm9::chr19:58811529..58811552,-p@chr19:58811529..58811552
-
Mm9::chr19:58811549..58811570,+p@chr19:58811549..58811570
+
Mm9::chr19:58812625..58812746,+p@chr19:58812625..58812746
+
Mm9::chr19:58812793..58812802,+p@chr19:58812793..58812802
+
Mm9::chr19:58812844..58812855,+p@chr19:58812844..58812855
+
Mm9::chr19:58813935..58813941,+p@chr19:58813935..58813941
+
Mm9::chr19:58814931..58814975,+p@chr19:58814931..58814975
+
Mm9::chr19:58814977..58814995,+p@chr19:58814977..58814995
+
Mm9::chr19:58815004..58815018,+p@chr19:58815004..58815018
+
Mm9::chr19:58815567..58815615,+p@chr19:58815567..58815615
+
Mm9::chr19:58815700..58815714,+p@chr19:58815700..58815714
+
Mm9::chr19:58818526..58818556,+p@chr19:58818526..58818556
+
Mm9::chr19:58818562..58818584,+p@chr19:58818562..58818584
+
Mm9::chr19:58818563..58818576,-p@chr19:58818563..58818576
-
Mm9::chr19:58818648..58818660,-p@chr19:58818648..58818660
-
Mm9::chr1:133735373..133735386,+p@chr1:133735373..133735386
+
Mm9::chr1:40294060..40294070,+p@chr1:40294060..40294070
+
Mm9::chr2:115888250..115888298,-p10@Meis2
Mm9::chr2:143941914..143941925,+p@chr2:143941914..143941925
+
Mm9::chr2:155555095..155555179,-p1@Edem2
Mm9::chr2:19367259..19367278,+p1@Ptf1a
Mm9::chr2:19374076..19374083,+p2@ENSMUST00000149577
Mm9::chr2:19410182..19410200,+p@chr2:19410182..19410200
+
Mm9::chr2:28335694..28335705,+p@chr2:28335694..28335705
+
Mm9::chr2:28417953..28417972,-p@chr2:28417953..28417972
-
Mm9::chr2:62321694..62321710,-p1@Gcg
Mm9::chr2:69058046..69058062,+p1@G6pc2
Mm9::chr2:90306884..90306908,-p@chr2:90306884..90306908
-
Mm9::chr3:120773902..120773903,+p@chr3:120773902..120773903
+
Mm9::chr3:20149411..20149432,-p@chr3:20149411..20149432
-
Mm9::chr3:20158426..20158429,-p@chr3:20158426..20158429
-
Mm9::chr3:20173776..20173782,-p@chr3:20173776..20173782
-
Mm9::chr3:67277368..67277377,+p@chr3:67277368..67277377
+
Mm9::chr3:67277578..67277581,+p@chr3:67277578..67277581
+
Mm9::chr3:89035405..89035418,+p3@Muc1
Mm9::chr4:109066767..109066782,+p@chr4:109066767..109066782
+
Mm9::chr4:109066810..109066851,+p@chr4:109066810..109066851
+
Mm9::chr4:137262518..137262542,-p1@ENSMUST00000135358
p1@uc008vjp.1
Mm9::chr4:137263373..137263442,+p2@Rap1gap
Mm9::chr5:144951277..144951290,+p@chr5:144951277..144951290
+
Mm9::chr5:23293509..23293569,+p1@Rint1
Mm9::chr5:23293575..23293592,+p2@Rint1
Mm9::chr5:43495214..43495226,+p@chr5:43495214..43495226
+
Mm9::chr5:54068360..54068364,+p@chr5:54068360..54068364
+
Mm9::chr5:54097752..54097764,-p@chr5:54097752..54097764
-
Mm9::chr5:54098747..54098758,-p2@Cckar
Mm9::chr6:108778728..108778738,+p2@Edem1
Mm9::chr6:142246939..142246955,+p1@Iapp
Mm9::chr6:30510507..30510512,+p@chr6:30510507..30510512
+
Mm9::chr6:40381577..40381580,-p@chr6:40381577..40381580
-
Mm9::chr6:41304169..41304184,+p1@Gm5409
p1@Try10
Mm9::chr6:51270886..51270895,-p@chr6:51270886..51270895
-
Mm9::chr6:51270916..51270924,-p@chr6:51270916..51270924
-
Mm9::chr7:149864591..149864616,+p@chr7:149864591..149864616
+
Mm9::chr7:149865606..149865619,-p1@Ins2
Mm9::chr7:16789503..16789562,-p2@Dhx34
Mm9::chr7:29325737..29325747,+p3@Sycn
Mm9::chr7:31243262..31243273,+p6@Nphs1
Mm9::chr7:31243299..31243312,+p3@Nphs1
Mm9::chr8:114210413..114210426,+p@chr8:114210413..114210426
+
Mm9::chr8:114210516..114210521,-p@chr8:114210516..114210521
-
Mm9::chr8:114210599..114210611,+p@chr8:114210599..114210611
+
Mm9::chr8:114211101..114211115,+p@chr8:114211101..114211115
+
Mm9::chr8:114212487..114212533,+p@chr8:114212487..114212533
+
Mm9::chr8:114214263..114214282,-p@chr8:114214263..114214282
-
Mm9::chr8:114214598..114214609,-p@chr8:114214598..114214609
-
Mm9::chr8:114214659..114214665,-p@chr8:114214659..114214665
-
Mm9::chr9:22018294..22018310,-p1@1810064F22Rik
Mm9::chr9:60297477..60297496,-p@chr9:60297477..60297496
-
Mm9::chr9:60297503..60297512,-p@chr9:60297503..60297512
-
Mm9::chr9:65909167..65909187,+p@chr9:65909167..65909187
+
Mm9::chr9:74711202..74711243,-p@chr9:74711202..74711243
-
Mm9::chr9:95301467..95301472,-p@chr9:95301467..95301472
-
Mm9::chr9:95302657..95302661,-p@chr9:95302657..95302661
-
Mm9::chr9:96620459..96620478,-p9@Zbtb38
Mm9::chrX:137133125..137133129,-p@chrX:137133125..137133129
-


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

GO IDGO nameFDR corrected p-value
GO:0004571mannosyl-oligosaccharide 1,2-alpha-mannosidase activity0.00952426148919091
GO:0005179hormone activity0.00952426148919091
GO:0015924mannosyl-oligosaccharide mannosidase activity0.00952426148919091
GO:0008643carbohydrate transport0.0192014725404575
GO:0015923mannosidase activity0.0245801750004437



Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br>disease_data<br>

Cell Type
Ontology termp-valuen

Uber Anatomy
Ontology termp-valuen

Disease
Ontology termp-valuen


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)

{{{tfbs_overrepresentation_jaspar}}}

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